MD10G1312700.v1.1

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000253
Physical Location & Seq
Forward (+)
39737904 .. 39741316
3413 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1312700.v1.1.491

Sequence Viewer

Length: 969 bp
ATGGCTCCAAAGGGAATGAATGTAGATGGCCAAATTTGTACCCAGCGAGCTGTTGACAAGGCCGGGAAAGAGTTTGCCACGGGTCTAGGATACAGGCGTTCTTCTCCGTTGGCTTCACTTAACTACAACTTTTCTTTCAGTGATCCTCCCACTTGGTTTCTTCCTTCCAAAGTGAGCTCTGGTCATCTTGATTTTATTCCGGAAGATGGTGCTATCAAGGTTGGCCCGCATCAAGGCGATTTATTTCAGGCTTATACTCTGATGAAAGTGAACAATGAGGCTGATGGAGACACCAAGTTTAAAGTTGATACTAATTTTTTTCCGCTCTTACACAAAATGATCCGAGAGAAGACAGATTGGGGTTTGAGTGTCAAGGTCACAGGTTGTGCTACTTTTCAGGTTGGTGTGCTGGAGTGGACAGAGACTACTTTACGAACTTATGAGAATGTGCTGCGTCAAGCAGATATTTATGGTGCTGTGGCAATGTCCCGTTATCCTTACAAATACTCATCTAATGTATGGAAAGCTTTTTGTGAGCTATGGGGGCCTTTAACCAACACCTTCCACCAGGGAAATGGGGAAATGAGTATTTCATTATATGACTTGAAGGTGATAGGTGGTTTACCAATTCTCGGTGCTCCTTATGAAGAGTTTATTCCTCCAAATGATGACCTGTGCAAGAAAGAAGCTTACCCGTCTACTCTTCCTGAACTTTTGAGAATTCATTCCCATTTGTGCAAATTTTATGCGCAGAAACATATATTTTGGAATCAATGGTTGGACCATTTTTATCGAGGAAAAATAGTTTATGCGGGCTATGGTGAAAAAAATCAGCGGATGTCCCCGAATGAGCAAAAGATCTTTAAAGCCCGAGGAATTTTGCTGGAAGTCACAAAAGAAGGGGCCTTGGCTGCATTTTTGGTATTCTGGCTTTGTAGATTTGTTTTGCCATTAAAGGGCGGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

323

Amino Acids

36.49

Weight (kDa)

8.57

Isoelectric Point (pI)

27.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 155 - 318 1.2e-12 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000253)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28912 FvH4_3g31370 FvH4_3g31371 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_4g10340 FvH4_6g28991 FvH4_7g16740 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610 FvH4_7g18610
malus_domestica MD10G1126100.v1.1 MD10G1312700.v1.1
rosa_chinensis RchiOBHm_Chr6g0276621
rosa_laevigata RLG00000023327 RLG00000023328
rosa_multiflora Rmu_co8195922.1_g000001 Rmu_co8303105.1_g000001 Rmu_co8385689.1_g000001 Rmu_sc0000385.1_g000010 Rmu_sc0000594.1_g000002 Rmu_sc0000857.1_g000010 Rmu_sc0001016.1_g000053 Rmu_sc0001468.1_g000028 Rmu_sc0001548.1_g000047 Rmu_sc0001548.1_g000048 Rmu_sc0002281.1_g000026 Rmu_sc0002281.1_g000027 Rmu_sc0002281.1_g000028 Rmu_sc0002478.1_g000001 Rmu_sc0002513.1_g000014 Rmu_sc0002662.1_g000017 Rmu_sc0003936.1_g000040 Rmu_sc0004084.1_g000047 Rmu_sc0005529.1_g000005 Rmu_sc0005529.1_g000006 Rmu_sc0005728.1_g000010 Rmu_sc0005747.1_g000017 Rmu_sc0005747.1_g000018 Rmu_sc0006385.1_g000001 Rmu_sc0006550.1_g000019 Rmu_sc0006803.1_g000033 Rmu_sc0007102.1_g000011 Rmu_sc0011018.1_g000001 Rmu_sc0011452.1_g000014 Rmu_sc0011805.1_g000001 Rmu_sc0011805.1_g000002 Rmu_sc0012566.1_g000001 Rmu_sc0013807.1_g000007 Rmu_sc0015817.1_g000001 Rmu_sc0015930.1_g000011 Rmu_sc0018873.1_g000003 Rmu_sc0020929.1_g000001
rosa_roxburghii Rroxscaffold_2G00081310 Rroxscaffold_2G00111790 Rroxscaffold_5G00349530 Rroxscaffold_5G00356270 Rroxscaffold_5G00356280 Rroxscaffold_5G00356290
rosa_rugosa Rorug01G0056400 Rorug01G0056500 Rorug02G0247000 Rorug03G0271700 Rorug04G0157900 Rorug05G0221700 Rorug05G0251400 Rorug05G0251400 Rorug06G0087300 Rorug07G0221900 Rorug07G0221900
rosa_samantha Rh1AG073200 Rh1AG073300 Rh1AG124600 Rh1AG124700 Rh1BG091900 Rh1CG031600 Rh1CG072100 Rh1CG072200 Rh1CG118800 Rh1CG276600 Rh1CG276700 Rh1DG077300 Rh2BG192000 Rh2BG330900 Rh2BG331000 Rh2BG517700 Rh2BG517800 Rh2CG188300 Rh2DG120800 Rh2DG323900 Rh2DG420700 Rh2DG433000 Rh2DG529400 Rh2DG529500 Rh3DG358100 Rh3DG358200 Rh4BG129700 Rh4BG129800 Rh4BG129900 Rh4BG166400 Rh4CG032000 Rh4DG024800 Rh4DG039500 Rh5AG223400 Rh5BG244500 Rh5BG244600 Rh5BG244700 Rh5CG363000 Rh5CG366900 Rh6AG117500 Rh6AG188600 Rh6AG188700 Rh6AG188800 Rh6BG111400 Rh6BG140800 Rh6BG178800 Rh6DG124100 Rh6DG210000 Rh7AG441200 Rh7BG296800 Rh7BG413900 Rh7BG414000 Rh7BG452400 Rh7DG234000 Rh7DG234100
rosa_wichuraiana Rw2G019410 Rw5G042140 Rw7G019590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 750
AccBSI CCGCTC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 698
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 5 cut(s) 227, 323, 812, 835, 960
AclWI GGATC 2 cut(s) 137, 334
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 4 cut(s) 33, 720, 740, 876
AfaI GTAC 1 cut(s) 40
AfiI CCNNNNNNNGG 4 cut(s) 206, 233, 632, 956
AgsI TTSAA 1 cut(s) 607
AjnI CCWGG 1 cut(s) 567
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AluBI AGCT 5 cut(s) 50, 177, 527, 538, 689
AluI AGCT 5 cut(s) 50, 177, 527, 538, 689
Alw21I GWGCWC 2 cut(s) 179, 640
Alw26I GTCTC 2 cut(s) 282, 416
AlwI GGATC 2 cut(s) 137, 334
Ama87I CYCGRG 1 cut(s) 870
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 5 cut(s) 28, 60, 223, 545, 903
ApeKI GCWGC 2 cut(s) 451, 911
ApoI RAATTY 4 cut(s) 33, 720, 740, 876
Asp700I GAANNNNTTC 1 cut(s) 724
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 4 cut(s) 224, 545, 781, 903
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 2 cut(s) 622, 833
AvaI CYCGRG 1 cut(s) 870
AvaII GGWCC 1 cut(s) 781
BaeI ACNNNNGTAYC 2 cut(s) 82, 115
BalI TGGCCA 1 cut(s) 30
BanII GRGCYC 2 cut(s) 179, 966
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 2 cut(s) 179, 640
BbvI GCAGC 2 cut(s) 438, 898
BccI CCATC 3 cut(s) 20, 200, 278
BciT130I CCWGG 1 cut(s) 569
BciVI GTATCC 1 cut(s) 83
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 282, 416
BfaI CTAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 83
BglII AGATCT 1 cut(s) 858
BisI GCNGC 2 cut(s) 452, 912
BlsI GCNGC 2 cut(s) 453, 913
Bme1390I CCNGG 2 cut(s) 64, 569
Bme18I GGWCC 1 cut(s) 781
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 4 cut(s) 224, 545, 781, 903
BmiI GGNNCC 3 cut(s) 6, 546, 904
BmrFI CCNGG 2 cut(s) 64, 569
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 64
BsaJI CCNNGG 4 cut(s) 78, 568, 871, 906
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 233, 632, 956
Bse3DI GCAATG 1 cut(s) 489
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 4 cut(s) 78, 568, 871, 906
BseGI GGATG 1 cut(s) 843
BseLI CCNNNNNNNGG 4 cut(s) 206, 233, 632, 956
BseMI GCAATG 1 cut(s) 489
BseXI GCAGC 2 cut(s) 438, 898
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 5 cut(s) 30, 62, 225, 547, 905
BsiHKAI GWGCWC 2 cut(s) 179, 640
BsiHKCI CYCGRG 1 cut(s) 870
BsiSI CCGG 2 cut(s) 63, 200
BslFI GGGAC 2 cut(s) 472, 826
BslI CCNNNNNNNGG 4 cut(s) 206, 233, 632, 956
BsmAI GTCTC 2 cut(s) 282, 416
BsmFI GGGAC 2 cut(s) 472, 826
BsnI GGCC 5 cut(s) 30, 62, 225, 547, 905
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 3 cut(s) 179, 640, 966
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 3 cut(s) 142, 339, 858
BspACI CCGC 5 cut(s) 227, 323, 812, 835, 960
BspANI GGCC 5 cut(s) 30, 62, 225, 547, 905
BspEI TCCGGA 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 6, 546, 904
BspPI GGATC 2 cut(s) 137, 334
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 489
BssECI CCNNGG 4 cut(s) 78, 568, 871, 906
BssMI GATC 3 cut(s) 142, 339, 858
BssT1I CCWWGG 1 cut(s) 906
Bst2UI CCWGG 1 cut(s) 569
Bst6I CTCTTC 2 cut(s) 642, 708
BstC8I GCNNGC 4 cut(s) 48, 227, 814, 962
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 843
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 3 cut(s) 145, 342, 861
BstMAI GTCTC 2 cut(s) 282, 416
BstMBI GATC 3 cut(s) 142, 339, 858
BstMWI GCNNNNNNNGC 2 cut(s) 544, 911
BstNI CCWGG 1 cut(s) 569
BstSCI CCNGG 2 cut(s) 62, 567
BstV1I GCAGC 2 cut(s) 438, 898
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 858
BstXI CCANNNNNNTGG 1 cut(s) 575
BstYI RGATCY 1 cut(s) 858
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 5 cut(s) 30, 62, 225, 547, 905
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 843
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 4 cut(s) 48, 227, 814, 962
CfoI GCGC 1 cut(s) 751
Cfr13I GGNCC 4 cut(s) 224, 545, 781, 903
CseI GACGC 1 cut(s) 443
Csp6I GTAC 1 cut(s) 39
CviQI GTAC 1 cut(s) 39
DpnI GATC 3 cut(s) 144, 341, 860
DpnII GATC 3 cut(s) 142, 339, 858
DraI TTTAAA 2 cut(s) 301, 865
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 642, 708
EarI CTCTTC 2 cut(s) 642, 708
Ecl136II GAGCTC 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 906
Eco24I GRGCYC 2 cut(s) 179, 966
Eco47I GGWCC 1 cut(s) 781
Eco53kI GAGCTC 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 870
EcoICRI GAGCTC 1 cut(s) 177
EcoO109I RGGNCCY 2 cut(s) 545, 903
EcoRI GAATTC 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 906
EcoT38I GRGCYC 2 cut(s) 179, 966
ErhI CCWWGG 1 cut(s) 906
FaqI GGGAC 2 cut(s) 472, 826
FauI CCCGC 3 cut(s) 234, 805, 953
FblI GTMKAC 1 cut(s) 698
Fnu4HI GCNGC 2 cut(s) 452, 912
FokI GGATG 1 cut(s) 850
FriOI GRGCYC 2 cut(s) 179, 966
Fsp4HI GCNGC 2 cut(s) 452, 912
FspBI CTAG 1 cut(s) 86
FspI TGCGCA 1 cut(s) 750
GlaI GCGC 1 cut(s) 750
GluI GCNGC 2 cut(s) 452, 912
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 5 cut(s) 30, 62, 225, 547, 905
HapII CCGG 2 cut(s) 63, 200
HgaI GACGC 1 cut(s) 443
HhaI GCGC 1 cut(s) 751
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 2 cut(s) 525, 687
HinfI GANTC 1 cut(s) 769
HpaII CCGG 2 cut(s) 63, 200
HphI GGTGA 2 cut(s) 622, 833
Hpy166II GTNNAC 5 cut(s) 55, 271, 417, 623, 699
Hpy188I TCNGA 2 cut(s) 261, 344
Hpy188III TCNNGA 3 cut(s) 188, 200, 707
Hpy8I GTNNAC 5 cut(s) 55, 271, 417, 623, 699
HpyAV CCTTC 4 cut(s) 174, 571, 601, 893
HpyCH4V TGCA 3 cut(s) 678, 738, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 544, 911
HspAI GCGC 1 cut(s) 749
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 142, 339, 858
LmnI GCTCC 2 cut(s) 10, 643
Lsp1109I GCAGC 2 cut(s) 438, 898
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 376, 889
MalI GATC 3 cut(s) 144, 341, 860
MbiI CCGCTC 1 cut(s) 325
MboI GATC 3 cut(s) 142, 339, 858
MboII GAAGA 6 cut(s) 93, 152, 215, 361, 659, 695
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 3 cut(s) 179, 640, 966
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 6 cut(s) 33, 313, 627, 720, 740, 876
MluNI TGGCCA 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 759
MnlI CCTC 5 cut(s) 156, 271, 669, 788, 866
Mox20I TGGCCA 1 cut(s) 30
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 724
MscI TGGCCA 1 cut(s) 30
MseI TTAA 5 cut(s) 120, 300, 551, 864, 953
Msp20I TGGCCA 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 835
MspI CCGG 2 cut(s) 63, 200
MspR9I CCNGG 2 cut(s) 64, 569
MvaI CCWGG 1 cut(s) 569
MwoI GCNNNNNNNGC 2 cut(s) 544, 911
NciI CCSGG 1 cut(s) 64
NdeII GATC 3 cut(s) 142, 339, 858
NlaIV GGNNCC 3 cut(s) 6, 546, 904
NmuCI GTSAC 2 cut(s) 376, 889
NsbI TGCGCA 1 cut(s) 750
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 1 cut(s) 769
PkrI GCNGC 2 cut(s) 453, 913
Psp124BI GAGCTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 3 cut(s) 6, 546, 904
PspPI GGNCC 4 cut(s) 224, 545, 781, 903
PsuI RGATCY 1 cut(s) 858
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SacI GAGCTC 1 cut(s) 179
SaqAI TTAA 5 cut(s) 120, 300, 551, 864, 953
SatI GCNGC 2 cut(s) 452, 912
Sau3AI GATC 3 cut(s) 142, 339, 858
Sau96I GGNCC 4 cut(s) 224, 545, 781, 903
ScrFI CCNGG 2 cut(s) 64, 569
SduI GDGCHC 3 cut(s) 179, 640, 966
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 1 cut(s) 781
Sse9I AATT 6 cut(s) 33, 313, 627, 720, 740, 876
SsiI CCGC 5 cut(s) 227, 323, 812, 835, 960
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 62, 567
StyI CCWWGG 1 cut(s) 906
TaqI TCGA 1 cut(s) 793
TasI AATT 6 cut(s) 33, 313, 627, 720, 740, 876
TfiI GAWTC 1 cut(s) 769
Tru1I TTAA 5 cut(s) 120, 300, 551, 864, 953
Tru9I TTAA 5 cut(s) 120, 300, 551, 864, 953
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 2 cut(s) 376, 889
TseI GCWGC 2 cut(s) 451, 911
Tsp45I GTSAC 2 cut(s) 376, 889
TspDTI ATGAA 5 cut(s) 32, 278, 582, 660, 713
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 781
XapI RAATTY 4 cut(s) 33, 720, 740, 876
XcmI CCANNNNNNNNNTGG 1 cut(s) 572
XmiI GTMKAC 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.