Rorug07G0221900

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000160
Physical Location & Seq
Reverse (-)
19971323 .. 19975115
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0221900.1

Sequence Viewer

Length: 2703 bp
ATGTTTTTCAGTATAATGAATGGTGGGTCTATGCATTCTGGTTTGGTTGGGCTTGTGTGCCTGGCCATTGCCTCTGCTATTTGTTGTTCAAGTGTTGGAAGCTCCAACAACATCATGTGCTTGGAGAGTGAAAGGCATGCTCTTCTCCAGTTCAAACAAGGCCTTGTGGATGAGTCCAATGCTCTTGCTTCTTGGGAAAACAAGAAAGATTGCTGCAAGTGGAGAGGAATAGCGTGCAACAACCAAACAGGTCATGTCACCAGACTTGATTTCTCCTTTAGATATTTCAATTATACAGAAGTTCCTTTAAGAGGTGAAATTAGTCCTTCACTACTTGAATTGCGATATCTAAATTACTTGGACCTCAGTTATAATGATTTTAGAGGAATGATCATTCCAAAGTTCATTGGCTCTTTGAGTCAATTGAAAGAACTCAAACTTGTATATGCTAATTTCAGTGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCACACTCTTGATCTTTCCTACAACTATGATGTAGAAAATCTTGAGTGGTTATCTCATCTTTCTTCCTTGAGATACCTGAACATGTCAAACATAGATTTGTCTATGGTTGATAATTGGCCACTATCTTTAAGCAAGCTCACTTTACTGACAGAGCTTCAATTATCCAACTGTGACCTTTTTTATGGCAATCTAAGATCAGTTTCCTTTATTAATTCTTCCACCTCTCTTAAAGTCCTTGACCTCTCTAATAACATTCTTGATTCTTTAATATTTTATTGGATAGCCAATGTCAGCAGCAACGTTGTCCATATTGATCTCCGTGAAAACGTTCTTGAAGGTCCCATCCCAGATGTCTTCACAAGCATGCTTTCTCTAGTAACACTAGATCTCTCTGACAATCTACTTGAAGGTGGGATACCAAAAGGCTTTCAAAACTTATGCAGCTTAGAGTCGTTGACCTTATGGTCAAACCAATTGTCTGAAAACATTGAGGACTCTGTTAAAACCTTGTCTTGTGCTGAGAACACACTTGAGACCTTGGACTTGGGTTTTAACCAATTTTGGGGGTCTGGACCAGATTTGAAACGTTTTTCACAGTTAAGAGTGTTATATCTTGACTGGAATCAACTAAATGGGTCTGTACCCGAGAGTGTCGGGCAACTCTCTAGCCTTGAAACATTATCTCTCTCCGAGAATTCTTTGAGTGGTGTCATAACAGAAGCCTACTTTTTGAACCTCTCTCGTTTACAGTTTTTGGATCTTTCTGGTAATCGTTTCTCTATCAACCTGAGCTCTGATTGGAATCCACCCTTTCAACTTGGTTGGTTACGCATGTCCTCTTGCAAGGTGGGCCCAGCTTTTCCCAAGTGGATTCTAACGCAGACAAATCTTACTGAGCTTGATCTCTCTAATGCTGGTTTATCAGGATCATTACCTAATAAGTTTTGGGATCTATTTTCTGGCTCATCTGATTTAGATCTCTCTATGAACCAAATCCATGGGAAACTACCGAATCTGTCATCGACAAGCTTGAGTTCTGTTTACTTGTCTTCTAATCTATTTTCTGGCGCATTGCCATCATTTTCTCCTATGCTACAAAGCCTGTATCTCTCGAATAATAGGTTTTCAGGACATTTGTCTTCCTTCTGTGCAACGCAGGCTCCACATTTAAGTTATCTTGACATTTCTAAGAACCTATTGTCTGGGGAGCTTCCTAATTGTTGGATGCAATTTCAAATTTTGGAACTATTCAATTTGGGAAAGAATAAATTATCTGGAAAAATACCAAGCTGGTTAGGCAATCTACAGAAAATTGCGATATTGCGTTTACATGATAACAACTTTTCAGGAGAATTGCCTTCTTTAGAGAACTGTACCGGTTTAGTGATGGTTGACCTTGGCAACAATAACCTGTCGGGAAAGATACCAACATGGATTGGCCAAAGCCTACCAAACTTGGTGATTCTACGCTTACGGTCAAATGAGTTTAATGGAATCATACCCTTCTCCCTGTGCAATCTAGCTGCCATTCATGTTTTGGACCTCTCTCACAACAATATTTCAGGAGGCTTGCCACATTGCTTCAATAACATAACCGCTTTGGCCGATGGTACTGGAGTTGAAGAAATTGTGGAACTTGTGTGGAAAGGAATAGAAATTGAGTTTGGGGAAAATCTTTACCTTATGAGAAGCATTGACATTTCAAGCAACTATTTGATTGGGGAAATTCCGCCTAGTATAGCAAGTATGACAGAGTTGAAATCTCTGAACCTGTCTAGAAACAAATTGACGGGAAAGCTTCCTGAAGACTTTGGTAACATGAAGATGTTGGAATCTCTTGATTTGTCAAGAAACCGGATATCTGGAAGAATTCCATCAGGCACCCAACTTCAGGGTTTTAATGCTTCTCAATATATGGGAAATCATGGACTTTGTGGACCACCGCTGACACCAAATTGCTCACGAGATGGAGCAACTCAAGCTGATGATAACAAAGAACATGATAATGATGGTCTCATAAGCCTGGGATTTTTTATCAGTGCTGTGCTGGGATTCGTCACTGGATTTTGGATGGTCTGCGGCAGTTTACTGCTTAAGACTTCTTGGAGATATGCTTATTTCAGATTCCTGGACAATGCAAAAGATTGGATTTATGTCAAAAGCGCTGTGTACAAGGCAAAAGTGCAAAGGAGACTTCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

900

Amino Acids

100.02

Weight (kDa)

5.38

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 42 - 80 1.3e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 79 - 297 6.3e-10 Leucine-rich repeat region
LRR_8 PF13855 266 - 325 5.4e-07 Leucine rich repeat
LRR_8 PF13855 365 - 425 7e-09 Leucine rich repeat
LRR_8 PF13855 626 - 686 3.8e-06 Leucine rich repeat
LRR_8 PF13855 729 - 786 8.8e-11 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AasI GACNNNNNNGTC 1 cut(s) 961
AccB1I GGYRCC 1 cut(s) 2378
AciI CCGC 4 cut(s) 2094, 2228, 2441, 2577
AclI AACGTT 3 cut(s) 798, 825, 1084
AclWI GGATC 3 cut(s) 1263, 1432, 1455
AcoI YGGCCR 4 cut(s) 63, 614, 1936, 2100
AcsI RAATTY 4 cut(s) 1192, 1734, 2223, 2367
AcuI CTGAAG 2 cut(s) 2322, 2372
AfaI GTAC 4 cut(s) 1140, 1873, 2110, 2669
AfeI AGCGCT 1 cut(s) 2662
AfiI CCNNNNNNNGG 4 cut(s) 311, 479, 1060, 2389
AflII CTTAAG 1 cut(s) 2591
AflIII ACRYGT 1 cut(s) 579
AgeI ACCGGT 1 cut(s) 1874
AjnI CCWGG 3 cut(s) 60, 2520, 2625
AjuI GAANNNNNNNTTGG 2 cut(s) 2145, 2177
Alw21I GWGCWC 1 cut(s) 1292
Alw26I GTCTC 3 cut(s) 1025, 2516, 2683
AlwI GGATC 3 cut(s) 1263, 1432, 1455
Ama87I CYCGRG 1 cut(s) 1142
Aor51HI AGCGCT 1 cut(s) 2662
AoxI GGCC 6 cut(s) 63, 160, 614, 1348, 1936, 2100
ApaI GGGCCC 1 cut(s) 1352
ApeKI GCWGC 4 cut(s) 213, 792, 939, 2021
ApoI RAATTY 4 cut(s) 1192, 1734, 2223, 2367
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AseI ATTAAT 1 cut(s) 708
AsiGI ACCGGT 1 cut(s) 1874
Asp700I GAANNNNTTC 1 cut(s) 825
AspLEI GCGC 2 cut(s) 1568, 2663
AspS9I GGNCC 8 cut(s) 361, 461, 836, 1070, 1348, 1349, 2038, 2435
AsuHPI GGTGA 3 cut(s) 250, 326, 1969
AvaI CYCGRG 1 cut(s) 1142
AvaII GGWCC 6 cut(s) 361, 461, 836, 1070, 2038, 2435
BaeGI GKGCMC 1 cut(s) 1352
BaeI ACNNNNGTAYC 2 cut(s) 2100, 2133
BalI TGGCCA 3 cut(s) 65, 616, 1938
BanI GGYRCC 1 cut(s) 2378
BanII GRGCYC 2 cut(s) 1292, 1352
BarI GAAGNNNNNNTAC 2 cut(s) 897, 929
BauI CACGAG 1 cut(s) 2460
BbsI GAAGAC 4 cut(s) 844, 1539, 1629, 2310
Bbv12I GWGCWC 1 cut(s) 1292
BbvI GCAGC 4 cut(s) 200, 804, 951, 2008
BccI CCATC 8 cut(s) 848, 1582, 1879, 2099, 2380, 2459, 2501, 2563
BciT130I CCWGG 3 cut(s) 62, 2522, 2627
BciVI GTATCC 1 cut(s) 906
BclI TGATCA 1 cut(s) 390
BcoDI GTCTC 3 cut(s) 1025, 2516, 2683
BfaI CTAG 6 cut(s) 872, 881, 1164, 2018, 2232, 2274
BfmI CTRYAG 1 cut(s) 1802
BfoI RGCGCY 1 cut(s) 2664
BfrI CTTAAG 1 cut(s) 2591
BfuI GTATCC 1 cut(s) 906
BglII AGATCT 2 cut(s) 883, 1474
BisI GCNGC 5 cut(s) 214, 793, 940, 2022, 2578
BlsI GCNGC 5 cut(s) 215, 794, 941, 2023, 2579
Bme1390I CCNGG 3 cut(s) 62, 2522, 2627
Bme18I GGWCC 6 cut(s) 361, 461, 836, 1070, 2038, 2435
BmeT110I CYCGRG 1 cut(s) 1142
BmgT120I GGNCC 8 cut(s) 361, 461, 836, 1070, 1348, 1349, 2038, 2435
BmiI GGNNCC 4 cut(s) 838, 1350, 1659, 2380
BmrFI CCNGG 3 cut(s) 62, 2522, 2627
BmsI GCATC 1 cut(s) 1713
BoxI GACNNNNGTC 1 cut(s) 1633
BpiI GAAGAC 4 cut(s) 844, 1539, 1629, 2310
BpmI CTGGAG 2 cut(s) 131, 2133
Bpu10I CCTNAGC 1 cut(s) 1286
BpuEI CTTGAG 5 cut(s) 560, 586, 1049, 1549, 2460
BsaBI GATNNNNATC 2 cut(s) 1299, 1473
BsaI GGTCTC 2 cut(s) 1025, 2516
BsaJI CCNNGG 4 cut(s) 1035, 1495, 1894, 2521
BsaWI WCCGGW 2 cut(s) 1874, 2352
BsaXI ACNNNNNCTCC 2 cut(s) 1642, 1672
Bsc4I CCNNNNNNNGG 4 cut(s) 311, 479, 1060, 2389
Bse118I RCCGGY 1 cut(s) 1874
Bse1I ACTGG 4 cut(s) 148, 1121, 2116, 2563
Bse3DI GCAATG 3 cut(s) 66, 1568, 2074
Bse8I GATNNNNATC 2 cut(s) 1299, 1473
BseBI CCWGG 3 cut(s) 62, 2522, 2627
BseDI CCNNGG 4 cut(s) 1035, 1495, 1894, 2521
BseGI GGATG 4 cut(s) 175, 840, 1728, 2574
BseJI GATNNNNATC 2 cut(s) 1299, 1473
BseLI CCNNNNNNNGG 4 cut(s) 311, 479, 1060, 2389
BseMI GCAATG 3 cut(s) 66, 1568, 2074
BseMII CTCAG 4 cut(s) 379, 1008, 1277, 1383
BseNI ACTGG 4 cut(s) 148, 1121, 2116, 2563
BseSI GKGCMC 1 cut(s) 1352
BseXI GCAGC 4 cut(s) 200, 804, 951, 2008
BseYI CCCAGC 2 cut(s) 1351, 2545
BshFI GGCC 6 cut(s) 65, 162, 616, 1350, 1938, 2102
BshNI GGYRCC 1 cut(s) 2378
BshTI ACCGGT 1 cut(s) 1874
BsiHKAI GWGCWC 1 cut(s) 1292
BsiHKCI CYCGRG 1 cut(s) 1142
BsiSI CCGG 2 cut(s) 1875, 2353
BslFI GGGAC 1 cut(s) 822
BslI CCNNNNNNNGG 4 cut(s) 311, 479, 1060, 2389
BsmAI GTCTC 3 cut(s) 1025, 2516, 2683
BsmFI GGGAC 1 cut(s) 822
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 6 cut(s) 65, 162, 616, 1350, 1938, 2102
Bso31I GGTCTC 2 cut(s) 1025, 2516
BsoBI CYCGRG 1 cut(s) 1142
Bsp120I GGGCCC 1 cut(s) 1348
Bsp1286I GDGCHC 2 cut(s) 1292, 1352
Bsp1407I TGTACA 1 cut(s) 2667
Bsp19I CCATGG 1 cut(s) 1495
BspACI CCGC 4 cut(s) 2094, 2228, 2441, 2577
BspANI GGCC 6 cut(s) 65, 162, 616, 1350, 1938, 2102
BspCNI CTCAG 4 cut(s) 378, 1009, 1278, 1384
BspLI GGNNCC 4 cut(s) 838, 1350, 1659, 2380
BspPI GGATC 3 cut(s) 1263, 1432, 1455
BspQI GCTCTTC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 2378
BspTI CTTAAG 1 cut(s) 2591
BspTNI GGTCTC 2 cut(s) 1025, 2516
BsrDI GCAATG 3 cut(s) 66, 1568, 2074
BsrFI RCCGGY 1 cut(s) 1874
BsrGI TGTACA 1 cut(s) 2667
BsrI ACTGG 4 cut(s) 148, 1121, 2116, 2563
BssAI RCCGGY 1 cut(s) 1874
BssECI CCNNGG 4 cut(s) 1035, 1495, 1894, 2521
BssSI CACGAG 1 cut(s) 2460
BssT1I CCWWGG 3 cut(s) 1035, 1495, 1894
Bst2BI CACGAG 1 cut(s) 2460
Bst2UI CCWGG 3 cut(s) 62, 2522, 2627
Bst4CI ACNGT 5 cut(s) 668, 1095, 1248, 1871, 1974
Bst6I CTCTTC 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 2591
BstAUI TGTACA 1 cut(s) 2667
BstC8I GCNNGC 6 cut(s) 138, 235, 632, 863, 1656, 2069
BstDEI CTNAG 7 cut(s) 365, 689, 943, 1017, 1286, 1392, 1686
BstDSI CCRYGG 1 cut(s) 1495
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 175, 840, 1728, 2574
BstH2I RGCGCY 1 cut(s) 2664
BstHHI GCGC 2 cut(s) 1568, 2663
BstMAI GTCTC 3 cut(s) 1025, 2516, 2683
BstMWI GCNNNNNNNGC 4 cut(s) 1347, 1655, 1794, 2477
BstNI CCWGG 3 cut(s) 62, 2522, 2627
BstNSI RCATGY 4 cut(s) 140, 583, 865, 1333
BstPAI GACNNNNGTC 1 cut(s) 1633
BstSCI CCNGG 3 cut(s) 60, 2520, 2625
BstSFI CTRYAG 1 cut(s) 1802
BstSLI GKGCMC 1 cut(s) 1352
BstV1I GCAGC 4 cut(s) 200, 804, 951, 2008
BstV2I GAAGAC 4 cut(s) 844, 1539, 1629, 2310
BstX2I RGATCY 4 cut(s) 883, 1255, 1447, 1474
BstXI CCANNNNNNTGG 1 cut(s) 1496
BstYI RGATCY 4 cut(s) 883, 1255, 1447, 1474
BsuI GTATCC 1 cut(s) 906
BsuRI GGCC 6 cut(s) 65, 162, 616, 1350, 1938, 2102
BtgI CCRYGG 1 cut(s) 1495
BtsCI GGATG 4 cut(s) 175, 840, 1728, 2574
BtsIMutI CAGTG 3 cut(s) 463, 2542, 2556
Cac8I GCNNGC 6 cut(s) 138, 235, 632, 863, 1656, 2069
CfoI GCGC 2 cut(s) 1568, 2663
Cfr10I RCCGGY 1 cut(s) 1874
Cfr13I GGNCC 8 cut(s) 361, 461, 836, 1070, 1348, 1349, 2038, 2435
Csp6I GTAC 4 cut(s) 1139, 1872, 2109, 2668
CspAI ACCGGT 1 cut(s) 1874
CviQI GTAC 4 cut(s) 1139, 1872, 2109, 2668
DdeI CTNAG 7 cut(s) 365, 689, 943, 1017, 1286, 1392, 1686
DrdI GACNNNNNNGTC 1 cut(s) 961
DseDI GACNNNNNNGTC 1 cut(s) 961
EaeI YGGCCR 4 cut(s) 63, 614, 1936, 2100
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 2217
Ecl136II GAGCTC 1 cut(s) 1290
Eco130I CCWWGG 3 cut(s) 1035, 1495, 1894
Eco147I AGGCCT 1 cut(s) 162
Eco24I GRGCYC 2 cut(s) 1292, 1352
Eco31I GGTCTC 2 cut(s) 1025, 2516
Eco32I GATATC 2 cut(s) 347, 2358
Eco47I GGWCC 6 cut(s) 361, 461, 836, 1070, 2038, 2435
Eco47III AGCGCT 1 cut(s) 2662
Eco53kI GAGCTC 1 cut(s) 1290
Eco57I CTGAAG 2 cut(s) 2322, 2372
Eco88I CYCGRG 1 cut(s) 1142
EcoICRI GAGCTC 1 cut(s) 1290
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 836
EcoRI GAATTC 2 cut(s) 1192, 2367
EcoRII CCWGG 3 cut(s) 60, 2520, 2625
EcoRV GATATC 2 cut(s) 347, 2358
EcoT14I CCWWGG 3 cut(s) 1035, 1495, 1894
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 2 cut(s) 1292, 1352
ErhI CCWWGG 3 cut(s) 1035, 1495, 1894
FaqI GGGAC 1 cut(s) 822
FbaI TGATCA 1 cut(s) 390
Fnu4HI GCNGC 5 cut(s) 214, 793, 940, 2022, 2578
FokI GGATG 4 cut(s) 182, 827, 1735, 2581
FriOI GRGCYC 2 cut(s) 1292, 1352
Fsp4HI GCNGC 5 cut(s) 214, 793, 940, 2022, 2578
FspBI CTAG 6 cut(s) 872, 881, 1164, 2018, 2232, 2274
GlaI GCGC 2 cut(s) 1567, 2662
GluI GCNGC 5 cut(s) 214, 793, 940, 2022, 2578
GsaI CCCAGC 2 cut(s) 1355, 2549
GsuI CTGGAG 2 cut(s) 131, 2133
HaeII RGCGCY 1 cut(s) 2664
HaeIII GGCC 6 cut(s) 65, 162, 616, 1350, 1938, 2102
HapII CCGG 2 cut(s) 1875, 2353
HhaI GCGC 2 cut(s) 1568, 2663
Hin6I GCGC 2 cut(s) 1566, 2661
HinP1I GCGC 2 cut(s) 1566, 2661
HincII GTYRAC 2 cut(s) 954, 1891
HindII GTYRAC 2 cut(s) 954, 1891
HindIII AAGCTT 2 cut(s) 1525, 2294
HpaII CCGG 2 cut(s) 1875, 2353
HphI GGTGA 3 cut(s) 250, 326, 1969
Hpy166II GTNNAC 9 cut(s) 461, 954, 1244, 1540, 1826, 1891, 2435, 2585, 2668
Hpy188I TCNGA 7 cut(s) 892, 979, 1189, 1294, 1468, 2265, 2621
Hpy8I GTNNAC 9 cut(s) 461, 954, 1244, 1540, 1826, 1891, 2435, 2585, 2668
HpyAV CCTTC 6 cut(s) 336, 827, 899, 1651, 1866, 2011
HpyCH4III ACNGT 5 cut(s) 668, 1095, 1248, 1871, 1974
HpyCH4IV ACGT 3 cut(s) 798, 825, 1084
HpyF10VI GCNNNNNNNGC 4 cut(s) 1347, 1655, 1794, 2477
HpyF3I CTNAG 7 cut(s) 365, 689, 943, 1017, 1286, 1392, 1686
HpySE526I ACGT 3 cut(s) 798, 825, 1084
HspAI GCGC 2 cut(s) 1566, 2661
Ksp22I TGATCA 1 cut(s) 390
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 4 cut(s) 107, 1663, 1705, 2468
Lsp1109I GCAGC 4 cut(s) 200, 804, 951, 2008
LweI GCATC 1 cut(s) 1713
MaeI CTAG 6 cut(s) 872, 881, 1164, 2018, 2232, 2274
MaeII ACGT 3 cut(s) 798, 825, 1084
MaeIII GTNAC 6 cut(s) 256, 668, 874, 1323, 2312, 2554
MfeI CAATTG 2 cut(s) 422, 971
MflI RGATCY 4 cut(s) 883, 1255, 1447, 1474
MhlI GDGCHC 2 cut(s) 1292, 1352
MlsI TGGCCA 3 cut(s) 65, 616, 1938
MluNI TGGCCA 3 cut(s) 65, 616, 1938
MlyI GAGTC 4 cut(s) 182, 427, 956, 986
MmeI TCCRAC 5 cut(s) 76, 129, 687, 1700, 2307
Mox20I TGGCCA 3 cut(s) 65, 616, 1938
Mph1103I ATGCAT 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 825
MscI TGGCCA 3 cut(s) 65, 616, 1938
MslI CAYNNNNRTG 3 cut(s) 860, 2321, 2502
Msp20I TGGCCA 3 cut(s) 65, 616, 1938
MspA1I CMGCKG 1 cut(s) 2443
MspCI CTTAAG 1 cut(s) 2591
MspI CCGG 2 cut(s) 1875, 2353
MspR9I CCNGG 3 cut(s) 62, 2522, 2627
MunI CAATTG 2 cut(s) 422, 971
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 3 cut(s) 62, 2522, 2627
MwoI GCNNNNNNNGC 4 cut(s) 1347, 1655, 1794, 2477
NcoI CCATGG 1 cut(s) 1495
NlaIV GGNNCC 4 cut(s) 838, 1350, 1659, 2380
NmuCI GTSAC 3 cut(s) 256, 668, 2554
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 4 cut(s) 140, 583, 865, 1333
PaeI GCATGC 2 cut(s) 140, 865
PceI AGGCCT 1 cut(s) 162
PciI ACATGT 1 cut(s) 579
PciSI GCTCTTC 1 cut(s) 147
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 825
PfoI TCCNGGA 1 cut(s) 2625
PinAI ACCGGT 1 cut(s) 1874
PkrI GCNGC 5 cut(s) 215, 794, 941, 2023, 2579
PleI GAGTC 4 cut(s) 181, 426, 955, 986
PpsI GAGTC 4 cut(s) 181, 426, 955, 986
PpuMI RGGWCCY 1 cut(s) 836
PscI ACATGT 1 cut(s) 579
PshAI GACNNNNGTC 1 cut(s) 1633
PshBI ATTAAT 1 cut(s) 708
PsiI TTATAA 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 1292
Psp1406I AACGTT 3 cut(s) 798, 825, 1084
Psp5II RGGWCCY 1 cut(s) 836
Psp6I CCWGG 3 cut(s) 60, 2520, 2625
PspFI CCCAGC 2 cut(s) 1351, 2545
PspGI CCWGG 3 cut(s) 60, 2520, 2625
PspN4I GGNNCC 4 cut(s) 838, 1350, 1659, 2380
PspOMI GGGCCC 1 cut(s) 1348
PspPI GGNCC 8 cut(s) 361, 461, 836, 1070, 1348, 1349, 2038, 2435
PspPPI RGGWCCY 1 cut(s) 836
PsuI RGATCY 4 cut(s) 883, 1255, 1447, 1474
RsaI GTAC 4 cut(s) 1140, 1873, 2110, 2669
RsaNI GTAC 4 cut(s) 1139, 1872, 2109, 2668
RseI CAYNNNNRTG 3 cut(s) 860, 2321, 2502
SacI GAGCTC 1 cut(s) 1292
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 5 cut(s) 214, 793, 940, 2022, 2578
Sau96I GGNCC 8 cut(s) 361, 461, 836, 1070, 1348, 1349, 2038, 2435
SchI GAGTC 4 cut(s) 182, 427, 956, 986
ScrFI CCNGG 3 cut(s) 62, 2522, 2627
SduI GDGCHC 2 cut(s) 1292, 1352
SfaNI GCATC 1 cut(s) 1713
SfcI CTRYAG 1 cut(s) 1802
SinI GGWCC 6 cut(s) 361, 461, 836, 1070, 2038, 2435
SmiMI CAYNNNNRTG 3 cut(s) 860, 2321, 2502
SmlI CTYRAG 6 cut(s) 539, 565, 1028, 1528, 2475, 2591
SmoI CTYRAG 6 cut(s) 539, 565, 1028, 1528, 2475, 2591
SphI GCATGC 2 cut(s) 140, 865
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 4 cut(s) 2094, 2228, 2441, 2577
SspI AATATT 2 cut(s) 768, 2056
SspMI CTAG 6 cut(s) 872, 881, 1164, 2018, 2232, 2274
SstI GAGCTC 1 cut(s) 1292
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 60, 2520, 2625
StyI CCWWGG 3 cut(s) 1035, 1495, 1894
TaaI ACNGT 5 cut(s) 668, 1095, 1248, 1871, 1974
TaiI ACGT 3 cut(s) 801, 828, 1087
TaqI TCGA 2 cut(s) 1520, 1610
TatI WGTACW 1 cut(s) 2667
TauI GCSGC 1 cut(s) 2580
TscAI CASTG 3 cut(s) 463, 2542, 2563
TseFI GTSAC 3 cut(s) 256, 668, 2554
TseI GCWGC 4 cut(s) 213, 792, 939, 2021
Tsp45I GTSAC 3 cut(s) 256, 668, 2554
TspDTI ATGAA 5 cut(s) 32, 394, 1499, 2018, 2333
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 3 cut(s) 463, 2542, 2563
Vha464I CTTAAG 1 cut(s) 2591
VpaK11BI GGWCC 6 cut(s) 361, 461, 836, 1070, 2038, 2435
VspI ATTAAT 1 cut(s) 708
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 4 cut(s) 1192, 1734, 2223, 2367
XbaI TCTAGA 1 cut(s) 2273
XceI RCATGY 4 cut(s) 140, 583, 865, 1333
XcmI CCANNNNNNNNNTGG 1 cut(s) 2032
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 6 cut(s) 872, 881, 1164, 2018, 2232, 2274
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.