Rroxscaffold_3G00221190

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000160
Physical Location & Seq
Reverse (-)
3918641 .. 3919561
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221190.1

Sequence Viewer

Length: 921 bp
ATGCAGCCCATTATCAAGCCTTGGCCCGCAAGAGGATGGGCGCTGGATTTAATTGGGATGATTCATCCACATTCATCACTTCAAAGACAAGTTCATCATAGTCGCGACCGATTTTTTTACAAAATGGGTCGAAGCGAACCTTTGAAAGAAGCATCGCGTGGTACGTTGCGACAATTCTGTTTAGGAACATTATCTGTAGATTTGGTATCCCGAAGTTTTTGTTTCGGACCGGGGGCAGCTTTCATGGGTGGTGAAGTTGATAAACCGGCAAAGGAATGGGGAATACGGGTTCGTCCATTCCGGTCCATATTATGCTCGTCTAACGGTCAAGCGAGAGCCAGCAACAAAATCATCATCACTTTGTTGAAGAAAATGTTGGAAGCTAATCCGCGACAATGGCATGAGACCCTTTATGAGACTCTTTGGGCCTACCGCACATCGAAGCGAAATCCCACCGCAACTACACCTTATGCTTTGATGTTTGGCCATGATGATGCAGTCCCGCCATTGGAAGTCAACGTCCAATCATTACGAGTTCAAGAGCAACATCATCTCATTGGAGAAGATTACGTTCGGGCTATGTGGCGGGAACATGAAGACCTTAGCGAAAAGCGCTTGGAGGCTTTAGATAGTTTGGTCATGGAAAAGCAACGAGTCGCTCGTGCCTACGACAAGAGGACGCGGGGAAGGAGTTACGGCGAAGGAGAGTTGGTTTGGAAAGCGATTCTCCCGCTTGGCGAAAAATTAGATGGTCGCGGCAAATGGACTCCAAGATGGGAAGGCCCATACATCATCTATAAAATCTTAGGGAAAGGAGCTTTTCATCTCAAGGACTTGGATGGAGATGTCCACCATAACCCTATCAATGGCGTATACTTGAAGAAATACTTTCCCAATGTCCGGGACTCGGAGGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

306

Amino Acids

35.29

Weight (kDa)

9.51

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 873
AccII CGCG 5 cut(s) 105, 157, 391, 682, 756
AciI CCGC 9 cut(s) 27, 389, 433, 456, 503, 586, 682, 731, 756
AcoI YGGCCR 1 cut(s) 484
AfaI GTAC 1 cut(s) 163
AfeI AGCGCT 1 cut(s) 614
AfiI CCNNNNNNNGG 5 cut(s) 32, 508, 866, 900, 907
AgsI TTSAA 5 cut(s) 83, 145, 367, 539, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AloI GAACNNNNNNTCC 2 cut(s) 273, 305
AluBI AGCT 3 cut(s) 239, 383, 818
AluI AGCT 3 cut(s) 239, 383, 818
Alw26I GTCTC 2 cut(s) 398, 410
Aor51HI AGCGCT 1 cut(s) 614
AoxI GGCC 4 cut(s) 23, 426, 484, 781
ApeKI GCWGC 2 cut(s) 4, 236
AspLEI GCGC 2 cut(s) 43, 615
AspS9I GGNCC 5 cut(s) 24, 227, 303, 426, 782
AsuC2I CCSGG 2 cut(s) 231, 902
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 2 cut(s) 227, 303
BalI TGGCCA 1 cut(s) 486
BauI CACGAG 1 cut(s) 660
BbsI GAAGAC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 16, 248
BccI CCATC 4 cut(s) 30, 743, 768, 833
BceAI ACGGC 1 cut(s) 712
BciVI GTATCC 1 cut(s) 217
BcnI CCSGG 2 cut(s) 231, 902
BcoDI GTCTC 2 cut(s) 398, 410
BfmI CTRYAG 1 cut(s) 195
BfoI RGCGCY 2 cut(s) 44, 616
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 3 cut(s) 5, 237, 757
BlsI GCNGC 3 cut(s) 6, 238, 758
Bme1390I CCNGG 2 cut(s) 231, 902
Bme18I GGWCC 2 cut(s) 227, 303
BmgT120I GGNCC 5 cut(s) 24, 227, 303, 426, 782
BmrFI CCNGG 2 cut(s) 231, 902
BmsI GCATC 2 cut(s) 161, 484
BpiI GAAGAC 1 cut(s) 603
Bpu10I CCTNAGC 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 2 cut(s) 231, 902
BsaI GGTCTC 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 20, 230
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 508, 866, 900, 907
Bse118I RCCGGY 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 20, 230
BseGI GGATG 4 cut(s) 41, 63, 64, 844
BseLI CCNNNNNNNGG 5 cut(s) 32, 508, 866, 900, 907
BseXI GCAGC 2 cut(s) 16, 248
Bsh1236I CGCG 5 cut(s) 105, 157, 391, 682, 756
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 25, 428, 486, 783
BsiEI CGRYCG 1 cut(s) 109
BsiSI CCGG 4 cut(s) 230, 266, 301, 901
BslFI GGGAC 2 cut(s) 485, 917
BslI CCNNNNNNNGG 5 cut(s) 32, 508, 866, 900, 907
BsmAI GTCTC 2 cut(s) 398, 410
BsmFI GGGAC 2 cut(s) 485, 917
BsnI GGCC 4 cut(s) 25, 428, 486, 783
Bso31I GGTCTC 1 cut(s) 398
Bsp68I TCGCGA 1 cut(s) 105
BspACI CCGC 9 cut(s) 27, 389, 433, 456, 503, 586, 682, 731, 756
BspANI GGCC 4 cut(s) 25, 428, 486, 783
BspFNI CGCG 5 cut(s) 105, 157, 391, 682, 756
BspTNI GGTCTC 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 20, 230
BssNAI GTATAC 1 cut(s) 874
BssSI CACGAG 1 cut(s) 660
BssT1I CCWWGG 1 cut(s) 20
Bst1107I GTATAC 1 cut(s) 874
Bst2BI CACGAG 1 cut(s) 660
Bst4CI ACNGT 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 27, 340
BstDEI CTNAG 2 cut(s) 602, 805
BstF5I GGATG 4 cut(s) 41, 63, 64, 844
BstFNI CGCG 5 cut(s) 105, 157, 391, 682, 756
BstH2I RGCGCY 2 cut(s) 44, 616
BstHHI GCGC 2 cut(s) 43, 615
BstMAI GTCTC 2 cut(s) 398, 410
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 397, 612
BstSCI CCNGG 2 cut(s) 229, 900
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 5 cut(s) 105, 157, 391, 682, 756
BstV1I GCAGC 2 cut(s) 16, 248
BstV2I GAAGAC 1 cut(s) 603
BstZ17I GTATAC 1 cut(s) 874
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 4 cut(s) 25, 428, 486, 783
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 4 cut(s) 41, 63, 64, 844
BtuMI TCGCGA 1 cut(s) 105
Cac8I GCNNGC 2 cut(s) 27, 340
CfoI GCGC 2 cut(s) 43, 615
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 5 cut(s) 24, 227, 303, 426, 782
CpoI CGGWCCG 1 cut(s) 227
CseI GACGC 1 cut(s) 688
Csp6I GTAC 1 cut(s) 162
CspI CGGWCCG 1 cut(s) 227
CviAII CATG 5 cut(s) 244, 401, 488, 593, 640
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 2 cut(s) 602, 805
EaeI YGGCCR 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 398
Eco47I GGWCC 2 cut(s) 227, 303
Eco47III AGCGCT 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 5 cut(s) 247, 404, 491, 596, 643
FalI AAGNNNNNCTT 4 cut(s) 124, 156, 872, 904
FaqI GGGAC 2 cut(s) 485, 917
FatI CATG 5 cut(s) 243, 400, 487, 592, 639
FauI CCCGC 5 cut(s) 34, 510, 579, 675, 738
FblI GTMKAC 1 cut(s) 873
Fnu4HI GCNGC 3 cut(s) 5, 237, 757
FokI GGATG 4 cut(s) 48, 51, 70, 851
Fsp4HI GCNGC 3 cut(s) 5, 237, 757
GlaI GCGC 2 cut(s) 42, 614
GluI GCNGC 3 cut(s) 5, 237, 757
HaeII RGCGCY 2 cut(s) 44, 616
HaeIII GGCC 4 cut(s) 25, 428, 486, 783
HapII CCGG 4 cut(s) 230, 266, 301, 901
HgaI GACGC 1 cut(s) 688
HhaI GCGC 2 cut(s) 43, 615
Hin1II CATG 5 cut(s) 247, 404, 491, 596, 643
Hin6I GCGC 2 cut(s) 41, 613
HinP1I GCGC 2 cut(s) 41, 613
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 7 cut(s) 61, 418, 654, 724, 766, 905, 914
HpaII CCGG 4 cut(s) 230, 266, 301, 901
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 3 cut(s) 517, 850, 874
Hpy188I TCNGA 2 cut(s) 227, 910
Hpy188III TCNNGA 3 cut(s) 104, 210, 539
Hpy8I GTNNAC 3 cut(s) 517, 850, 874
HpyAV CCTTC 3 cut(s) 681, 695, 773
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 3 cut(s) 164, 519, 570
HpyCH4V TGCA 2 cut(s) 4, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 397, 612
HpyF3I CTNAG 2 cut(s) 602, 805
HpySE526I ACGT 3 cut(s) 164, 519, 570
Hsp92II CATG 5 cut(s) 247, 404, 491, 596, 643
HspAI GCGC 2 cut(s) 41, 613
LmnI GCTCC 1 cut(s) 815
LpnPI CCDG 6 cut(s) 29, 243, 279, 314, 352, 914
Lsp1109I GCAGC 2 cut(s) 16, 248
LweI GCATC 2 cut(s) 161, 484
MaeII ACGT 3 cut(s) 164, 519, 570
MaeIII GTNAC 1 cut(s) 692
MboII GAAGA 4 cut(s) 379, 575, 608, 892
MlsI TGGCCA 1 cut(s) 486
MluCI AATT 3 cut(s) 51, 173, 743
MluNI TGGCCA 1 cut(s) 486
MlyI GAGTC 4 cut(s) 412, 663, 760, 899
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 4 cut(s) 26, 613, 669, 904
Mox20I TGGCCA 1 cut(s) 486
MscI TGGCCA 1 cut(s) 486
MseI TTAA 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 486
MspI CCGG 4 cut(s) 230, 266, 301, 901
MspR9I CCNGG 2 cut(s) 231, 902
MvnI CGCG 5 cut(s) 105, 157, 391, 682, 756
MwoI GCNNNNNNNGC 2 cut(s) 397, 612
NciI CCSGG 2 cut(s) 231, 902
NlaIII CATG 5 cut(s) 247, 404, 491, 596, 643
NruI TCGCGA 1 cut(s) 105
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 658
PfeI GAWTC 2 cut(s) 61, 724
PfoI TCCNGGA 1 cut(s) 900
PkrI GCNGC 3 cut(s) 6, 238, 758
PleI GAGTC 4 cut(s) 412, 662, 760, 899
PpsI GAGTC 4 cut(s) 412, 662, 760, 899
PspPI GGNCC 5 cut(s) 24, 227, 303, 426, 782
RruI TCGCGA 1 cut(s) 105
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 1 cut(s) 492
Rsr2I CGGWCCG 1 cut(s) 227
RsrII CGGWCCG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 3 cut(s) 5, 237, 757
Sau96I GGNCC 5 cut(s) 24, 227, 303, 426, 782
SchI GAGTC 4 cut(s) 412, 663, 760, 899
ScrFI CCNGG 2 cut(s) 231, 902
SetI ASST 9 cut(s) 142, 167, 241, 385, 469, 522, 573, 603, 820
SfaNI GCATC 2 cut(s) 161, 484
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 2 cut(s) 227, 303
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 3 cut(s) 51, 173, 743
SsiI CCGC 9 cut(s) 27, 389, 433, 456, 503, 586, 682, 731, 756
StyD4I CCNGG 2 cut(s) 229, 900
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 3 cut(s) 167, 522, 573
TaqI TCGA 2 cut(s) 130, 440
TaqII GACCGA 1 cut(s) 123
TasI AATT 3 cut(s) 51, 173, 743
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 2 cut(s) 61, 724
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseI GCWGC 2 cut(s) 4, 236
TspDTI ATGAA 6 cut(s) 53, 63, 83, 232, 609, 812
VpaK11BI GGWCC 2 cut(s) 227, 303
XmiI GTMKAC 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.