Rmu_sc0019475.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019475.1
OG0000160
Physical Location & Seq
Forward (+)
1 .. 531
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019475.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
gggaacaatgcactcaagatcacagttcaacatgtgaatggcatgcttaaagcaaaagttcccgaagcaaacaaacttacagatcacgaaagggctgtttttcaagaagaacaggtgatggagaagccatcacgtgtctcagtctttcagcgtctagggacgaacaatccaccccgcgtcccaatctttcagcgcttggaaactcaaaagcaaccccgtgtctcagctttccagcgtttgggcaacacttcttcattaccgtccaacgagtcacaagcaagcaagaaatggaaggttaaacgacacacaagggtgatcttcaaaaagacagtgggttctaagctggacaaaaacttggaagaatcagtgtcagtgaactgcgtttcttttgaagatcaagatcaggctccagaattcattgataccgcccagcctgctcccccacaaatagaggatggaggacaagcaaccattgatgacctccaagagatcaaccttgggacagctgaggacccaaagcctatatttgtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

177

Amino Acids

19.8

Weight (kDa)

8.03

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 238
AccII CGCG 1 cut(s) 177
AciI CCGC 2 cut(s) 175, 426
AcsI RAATTY 1 cut(s) 413
AcvI CACGTG 1 cut(s) 134
AfeI AGCGCT 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 238
AflIII ACRYGT 2 cut(s) 31, 133
AgsI TTSAA 4 cut(s) 29, 104, 322, 392
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 3 cut(s) 227, 343, 506
AluI AGCT 3 cut(s) 227, 343, 506
Alw26I GTCTC 2 cut(s) 142, 226
Aor51HI AGCGCT 1 cut(s) 194
ApoI RAATTY 1 cut(s) 413
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 511
AsuHPI GGTGA 2 cut(s) 127, 325
AvaII GGWCC 1 cut(s) 511
BbrPI CACGTG 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 507
BccI CCATC 3 cut(s) 112, 136, 449
BcoDI GTCTC 2 cut(s) 142, 226
BfaI CTAG 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 511
BmiI GGNNCC 2 cut(s) 408, 513
BpmI CTGGAG 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 507
BsaAI YACGTR 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 1 cut(s) 460
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 3 cut(s) 153, 237, 498
BseYI CCCAGC 1 cut(s) 429
Bsh1236I CGCG 1 cut(s) 177
BslFI GGGAC 3 cut(s) 164, 172, 514
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 142, 226
BsmFI GGGAC 3 cut(s) 164, 172, 514
Bsp143I GATC 6 cut(s) 18, 82, 315, 394, 400, 489
BspACI CCGC 2 cut(s) 175, 426
BspCNI CTCAG 3 cut(s) 152, 236, 499
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 408, 513
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 6 cut(s) 18, 82, 315, 394, 400, 489
BssT1I CCWWGG 1 cut(s) 496
Bst4CI ACNGT 3 cut(s) 25, 261, 331
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 3 cut(s) 44, 280, 435
BstDEI CTNAG 4 cut(s) 139, 223, 339, 507
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 6 cut(s) 21, 85, 318, 397, 403, 492
BstMAI GTCTC 2 cut(s) 142, 226
BstMBI GATC 6 cut(s) 18, 82, 315, 394, 400, 489
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNSI RCATGY 2 cut(s) 35, 46
BstUI CGCG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 3 cut(s) 336, 372, 378
Cac8I GCNNGC 3 cut(s) 44, 280, 435
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 511
CseI GACGC 2 cut(s) 140, 166
CviAII CATG 2 cut(s) 32, 43
CviJI RGCY 8 cut(s) 95, 127, 227, 343, 407, 433, 506, 520
CviKI_1 RGCY 8 cut(s) 95, 127, 227, 343, 407, 433, 506, 520
DdeI CTNAG 4 cut(s) 139, 223, 339, 507
DpnI GATC 6 cut(s) 20, 84, 317, 396, 402, 491
DpnII GATC 6 cut(s) 18, 82, 315, 394, 400, 489
Eco130I CCWWGG 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 511
Eco47III AGCGCT 1 cut(s) 194
Eco72I CACGTG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 2 cut(s) 35, 46
FaiI YATR 3 cut(s) 33, 44, 524
FaqI GGGAC 3 cut(s) 164, 172, 514
FatI CATG 2 cut(s) 31, 42
FauI CCCGC 1 cut(s) 182
FokI GGATG 1 cut(s) 467
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 194
GsaI CCCAGC 1 cut(s) 433
GsuI CTGGAG 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 196
HgaI GACGC 2 cut(s) 140, 166
HhaI GCGC 1 cut(s) 195
Hin1II CATG 2 cut(s) 35, 46
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 2 cut(s) 269, 362
HphI GGTGA 2 cut(s) 127, 325
Hpy166II GTNNAC 1 cut(s) 376
Hpy188III TCNNGA 6 cut(s) 16, 62, 86, 104, 398, 410
Hpy8I GTNNAC 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 3 cut(s) 25, 261, 331
HpyCH4IV ACGT 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 4 cut(s) 139, 223, 339, 507
HpySE526I ACGT 1 cut(s) 133
Hsp92II CATG 2 cut(s) 35, 46
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 6 cut(s) 18, 82, 315, 394, 400, 489
LmnI GCTCC 2 cut(s) 412, 442
LpnPI CCDG 7 cut(s) 98, 245, 329, 389, 423, 443, 447
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 270
MalI GATC 6 cut(s) 20, 84, 317, 396, 402, 491
MboI GATC 6 cut(s) 18, 82, 315, 394, 400, 489
MboII GAAGA 5 cut(s) 119, 243, 310, 371, 404
MluCI AATT 1 cut(s) 413
MlyI GAGTC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 4 cut(s) 445, 452, 491, 502
MseI TTAA 2 cut(s) 48, 297
MslI CAYNNNNRTG 2 cut(s) 36, 311
MspA1I CMGCKG 1 cut(s) 506
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 434
NdeII GATC 6 cut(s) 18, 82, 315, 394, 400, 489
NlaIII CATG 2 cut(s) 35, 46
NlaIV GGNNCC 2 cut(s) 408, 513
NmuCI GTSAC 1 cut(s) 270
NspI RCATGY 2 cut(s) 35, 46
OliI CACNNNNGTG 1 cut(s) 311
PaeI GCATGC 1 cut(s) 46
PciI ACATGT 1 cut(s) 31
PfeI GAWTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 238
PleI GAGTC 1 cut(s) 277
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
PpsI GAGTC 1 cut(s) 277
Ppu21I YACGTR 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 511
PscI ACATGT 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 511
PspCI CACGTG 1 cut(s) 134
PspFI CCCAGC 1 cut(s) 429
PspN4I GGNNCC 2 cut(s) 408, 513
PspPI GGNCC 1 cut(s) 511
PspPPI RGGWCCY 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 506
RseI CAYNNNNRTG 2 cut(s) 36, 311
SaqAI TTAA 2 cut(s) 48, 297
Sau3AI GATC 6 cut(s) 18, 82, 315, 394, 400, 489
Sau96I GGNCC 1 cut(s) 511
SchI GAGTC 1 cut(s) 278
SetI ASST 8 cut(s) 117, 136, 229, 297, 345, 483, 498, 508
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 2 cut(s) 36, 311
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SphI GCATGC 1 cut(s) 46
Sse9I AATT 1 cut(s) 413
SsiI CCGC 2 cut(s) 175, 426
SspMI CTAG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 3 cut(s) 25, 261, 331
TaiI ACGT 1 cut(s) 136
TasI AATT 1 cut(s) 413
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 2 cut(s) 48, 297
Tru9I TTAA 2 cut(s) 48, 297
TscAI CASTG 3 cut(s) 336, 372, 378
TseFI GTSAC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 243, 406
TspRI CASTG 3 cut(s) 336, 372, 378
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 1 cut(s) 511
XapI RAATTY 1 cut(s) 413
XceI RCATGY 2 cut(s) 35, 46
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.