pycom16g18350

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000160
Physical Location & Seq
Reverse (-)
14964381 .. 14964869
489 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g18350.1

Sequence Viewer

Length: 489 bp
ATGTCGCCACAAAGGCAAATACTACCTTACTCCTTCCAACTGAGTGAGCTATGCTCTAGCAATGTTGCTGAGTACCAAACATTGATCATTGGGCTCCAAATGGCGATCAACATGGAAATCACAGCTCTCGAGGTATACGGCGATTCTAAGCTCATAATCAATCAGCTCTTAACTGAATATGAGGTGAGGAAAGATGATCTTGTCCCATACTTCCGGCTGGCGACTCAACTGCTACAAAAGTTCGAGGCTGTGACACTAGAACATGTGCCAAAAAAAGAAAATCAAATGGCAGACGCTCTCGCCAATCTAGCCTCGAGTATGACACTAGGAAAAGATGAAGCTGCAGACGTGCCAGTTTGCCAAAGATGGGTGATTTCGTTCGTTAATGAAATGTCACCGGATGATACAAATGTCATCTCAGTACTTCCAGTCGATGCTGAAGAGTGGAGACAGCCGCTGATCGACTATTTGGAGCACGGAAAGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

163

Amino Acids

18.39

Weight (kDa)

4.44

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 14 - 104 5.2e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 135
AciI CCGC 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 74, 423
AfiI CCNNNNNNNGG 1 cut(s) 367
AflIII ACRYGT 1 cut(s) 262
AjiI CACGTC 1 cut(s) 349
AluBI AGCT 6 cut(s) 49, 125, 151, 166, 341, 484
AluI AGCT 6 cut(s) 49, 125, 151, 166, 341, 484
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 442
AlwNI CAGNNNCTG 1 cut(s) 457
Ama87I CYCGRG 2 cut(s) 128, 313
ApeKI GCWGC 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 196, 382, 387
AvaI CYCGRG 2 cut(s) 128, 313
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 4 cut(s) 57, 257, 308, 326
BfmI CTRYAG 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 13
BisI GCNGC 2 cut(s) 342, 455
BlsI GCNGC 2 cut(s) 343, 456
BmcAI AGTACT 1 cut(s) 423
BmeT110I CYCGRG 2 cut(s) 128, 313
BmgBI CACGTC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 95
BmsI GCATC 1 cut(s) 424
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 353, 428
Bse3DI GCAATG 1 cut(s) 67
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 3 cut(s) 32, 60, 432
BseNI ACTGG 2 cut(s) 353, 428
BseXI GCAGC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 2 cut(s) 128, 313
BsiSI CCGG 2 cut(s) 214, 398
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 188
BsoBI CYCGRG 2 cut(s) 128, 313
Bsp1286I GDGCHC 2 cut(s) 96, 477
Bsp143I GATC 4 cut(s) 84, 105, 196, 459
BspACI CCGC 1 cut(s) 455
BspCNI CTCAG 3 cut(s) 33, 61, 431
BspLI GGNNCC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 2 cut(s) 353, 428
BssMI GATC 4 cut(s) 84, 105, 196, 459
BssNAI GTATAC 1 cut(s) 136
Bst1107I GTATAC 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 4 cut(s) 41, 69, 147, 418
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 4 cut(s) 87, 108, 199, 462
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 4 cut(s) 84, 105, 196, 459
BstMWI GCNNNNNNNGC 3 cut(s) 13, 308, 481
BstNSI RCATGY 1 cut(s) 266
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 328
BstZ17I GTATAC 1 cut(s) 136
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 219
CaiI CAGNNNCTG 1 cut(s) 457
CseI GACGC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 73, 422
CviAII CATG 2 cut(s) 112, 263
CviQI GTAC 2 cut(s) 73, 422
DdeI CTNAG 4 cut(s) 41, 69, 147, 418
DpnI GATC 4 cut(s) 86, 107, 198, 461
DpnII GATC 4 cut(s) 84, 105, 196, 459
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 2 cut(s) 128, 313
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 2 cut(s) 115, 266
FaiI YATR 9 cut(s) 52, 113, 136, 155, 180, 208, 264, 320, 487
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 111, 262
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 342, 455
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 342, 455
FspBI CTAG 4 cut(s) 57, 257, 308, 326
GluI GCNGC 2 cut(s) 342, 455
HapII CCGG 2 cut(s) 214, 398
HgaI GACGC 1 cut(s) 302
Hin1II CATG 2 cut(s) 115, 266
HinfI GANTC 2 cut(s) 143, 223
HpaII CCGG 2 cut(s) 214, 398
HphI GGTGA 3 cut(s) 196, 382, 387
Hpy166II GTNNAC 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 308, 481
HpyF3I CTNAG 4 cut(s) 41, 69, 147, 418
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 2 cut(s) 115, 266
Ksp22I TGATCA 1 cut(s) 84
Kzo9I GATC 4 cut(s) 84, 105, 196, 459
LmnI GCTCC 2 cut(s) 99, 472
LpnPI CCDG 5 cut(s) 203, 227, 366, 411, 441
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 424
MaeI CTAG 4 cut(s) 57, 257, 308, 326
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 250, 393
MalI GATC 4 cut(s) 86, 107, 198, 461
MboI GATC 4 cut(s) 84, 105, 196, 459
MboII GAAGA 1 cut(s) 452
MhlI GDGCHC 2 cut(s) 96, 477
MlyI GAGTC 1 cut(s) 217
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 5 cut(s) 124, 175, 180, 238, 322
MseI TTAA 2 cut(s) 170, 384
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 2 cut(s) 214, 398
MwoI GCNNNNNNNGC 3 cut(s) 13, 308, 481
NdeII GATC 4 cut(s) 84, 105, 196, 459
NlaIII CATG 2 cut(s) 115, 266
NlaIV GGNNCC 1 cut(s) 95
NmuCI GTSAC 2 cut(s) 250, 393
NspI RCATGY 1 cut(s) 266
PaeR7I CTCGAG 2 cut(s) 128, 313
PciI ACATGT 1 cut(s) 262
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 343, 456
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PscI ACATGT 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 95
PspXI VCTCGAGB 1 cut(s) 313
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 457
RsaI GTAC 2 cut(s) 74, 423
RsaNI GTAC 2 cut(s) 73, 422
SaqAI TTAA 2 cut(s) 170, 384
SatI GCNGC 2 cut(s) 342, 455
Sau3AI GATC 4 cut(s) 84, 105, 196, 459
ScaI AGTACT 1 cut(s) 423
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 2 cut(s) 96, 477
SfaNI GCATC 1 cut(s) 424
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 2 cut(s) 128, 313
SlaI CTCGAG 2 cut(s) 128, 313
SmlI CTYRAG 2 cut(s) 128, 313
SmoI CTYRAG 2 cut(s) 128, 313
SsiI CCGC 1 cut(s) 455
SspMI CTAG 4 cut(s) 57, 257, 308, 326
TaiI ACGT 1 cut(s) 351
TaqI TCGA 5 cut(s) 129, 243, 314, 432, 462
TatI WGTACW 1 cut(s) 421
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 170, 384
Tru9I TTAA 2 cut(s) 170, 384
TseFI GTSAC 2 cut(s) 250, 393
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 2 cut(s) 250, 393
TspDTI ATGAA 2 cut(s) 351, 402
XceI RCATGY 1 cut(s) 266
XhoI CTCGAG 2 cut(s) 128, 313
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 4 cut(s) 57, 257, 308, 326
ZrmI AGTACT 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.