Rroxscaffold_5G00385150

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000160
Physical Location & Seq
Forward (+)
64298775 .. 64299545
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00385150.1

Sequence Viewer

Length: 402 bp
ATGTGGCAAGAATACGAAGATCTTAGCGAGAAGCGCTTAGAGGCGTTGGACAACTTAGTCATGGAAAAACAGCGGATTGCTCGCGCCTATGATAAGAGGACGTGGGGTCGCAGCTACGCGGAAGAAGAACTCGTTTGGAAAGTGGTGTTGCCCTTTGGCGAGAAGTTGACCGGCCGAGGTAAGTGGACTCCGCGCCGGGAAGGACCCTTTGTTATTCACGAATATGGAGGGCGGGGCTTTTCACCTCAAAGATTTGGATGTGGCTTTGCAGCCAAAAGCAATACAAGTACATTCGTGAGAGCTACATTTGCGAATTACAAAGCCAAAAGTGGCGGAAAGTCAAATGGATTTCGATCTTCTAAGAGTTTCGGATCTTCTATAAAGAAGGAGGCAGCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

133

Amino Acids

15.18

Weight (kDa)

10.0

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AccII CGCG 3 cut(s) 84, 119, 193
AciI CCGC 5 cut(s) 73, 119, 191, 232, 333
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 172
AfaI GTAC 1 cut(s) 289
AfeI AGCGCT 1 cut(s) 35
AhdI GACNNNNNGTC 1 cut(s) 105
AjiI CACGTC 1 cut(s) 102
AluBI AGCT 2 cut(s) 114, 302
AluI AGCT 2 cut(s) 114, 302
AlwI GGATC 1 cut(s) 379
Aor51HI AGCGCT 1 cut(s) 35
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 3 cut(s) 111, 269, 392
AspLEI GCGC 3 cut(s) 36, 86, 195
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 123, 281
BcnI CCSGG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 37
BglII AGATCT 1 cut(s) 19
BisI GCNGC 3 cut(s) 112, 270, 393
BlsI GCNGC 3 cut(s) 113, 271, 394
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 203
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 263
BseJI GATNNNNATC 1 cut(s) 352
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 123, 281
Bsh1236I CGCG 3 cut(s) 84, 119, 193
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 175
BsiSI CCGG 2 cut(s) 171, 196
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 3 cut(s) 19, 353, 371
BspACI CCGC 5 cut(s) 73, 119, 191, 232, 333
BspANI GGCC 1 cut(s) 174
BspFNI CGCG 3 cut(s) 84, 119, 193
BspLI GGNNCC 1 cut(s) 205
BspPI GGATC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 3 cut(s) 19, 353, 371
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 23, 37, 55, 360
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 3 cut(s) 84, 119, 193
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 3 cut(s) 36, 86, 195
BstKTI GATC 3 cut(s) 22, 356, 374
BstMBI GATC 3 cut(s) 19, 353, 371
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 33, 308
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 3 cut(s) 84, 119, 193
BstV1I GCAGC 2 cut(s) 123, 281
BstX2I RGATCY 2 cut(s) 19, 371
BstYI RGATCY 2 cut(s) 19, 371
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 1 cut(s) 174
BtrI CACGTC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 82
CfoI GCGC 3 cut(s) 36, 86, 195
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 288
CviAII CATG 1 cut(s) 61
CviJI RGCY 7 cut(s) 114, 174, 237, 264, 272, 302, 323
CviKI_1 RGCY 7 cut(s) 114, 174, 237, 264, 272, 302, 323
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 4 cut(s) 23, 37, 55, 360
DpnI GATC 3 cut(s) 21, 355, 373
DpnII GATC 3 cut(s) 19, 353, 371
DrdI GACNNNNNNGTC 1 cut(s) 56
DriI GACNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 172
EagI CGGCCG 1 cut(s) 172
Eam1105I GACNNNNNGTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 348
EclXI CGGCCG 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 203
Eco47III AGCGCT 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 172
EcoO109I RGGNCCY 1 cut(s) 203
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 90, 225, 380
FatI CATG 1 cut(s) 60
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 112, 270, 393
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 3 cut(s) 112, 270, 393
GlaI GCGC 3 cut(s) 35, 85, 194
GluI GCNGC 3 cut(s) 112, 270, 393
HaeII RGCGCY 1 cut(s) 37
HaeIII GGCC 1 cut(s) 174
HapII CCGG 2 cut(s) 171, 196
HhaI GCGC 3 cut(s) 36, 86, 195
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 3 cut(s) 34, 84, 193
HinP1I GCGC 3 cut(s) 34, 84, 193
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 1 cut(s) 187
HpaII CCGG 2 cut(s) 171, 196
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 168, 186
Hpy188I TCNGA 1 cut(s) 371
Hpy188III TCNNGA 2 cut(s) 218, 295
Hpy8I GTNNAC 2 cut(s) 168, 186
HpyAV CCTTC 2 cut(s) 194, 379
HpyCH4IV ACGT 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 308
HpyF3I CTNAG 4 cut(s) 23, 37, 55, 360
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 3 cut(s) 34, 84, 193
Kzo9I GATC 3 cut(s) 19, 353, 371
LpnPI CCDG 2 cut(s) 184, 209
Lsp1109I GCAGC 2 cut(s) 123, 281
MaeII ACGT 1 cut(s) 101
MalI GATC 3 cut(s) 21, 355, 373
MboI GATC 3 cut(s) 19, 353, 371
MboII GAAGA 5 cut(s) 29, 134, 137, 348, 366
MflI RGATCY 2 cut(s) 19, 371
MluCI AATT 1 cut(s) 313
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 7 cut(s) 34, 90, 170, 221, 255, 382, 390
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 2 cut(s) 171, 196
MspR9I CCNGG 1 cut(s) 197
MvnI CGCG 3 cut(s) 84, 119, 193
MwoI GCNNNNNNNGC 2 cut(s) 33, 308
NciI CCSGG 1 cut(s) 197
NdeII GATC 3 cut(s) 19, 353, 371
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 205
NmeAIII GCCGAG 1 cut(s) 200
PkrI GCNGC 3 cut(s) 113, 271, 394
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 203
PspPPI RGGWCCY 1 cut(s) 203
PsuI RGATCY 2 cut(s) 19, 371
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 222
SatI GCNGC 3 cut(s) 112, 270, 393
Sau3AI GATC 3 cut(s) 19, 353, 371
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 197
SetI ASST 6 cut(s) 104, 116, 181, 247, 304, 401
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 222
Sse9I AATT 1 cut(s) 313
SsiI CCGC 5 cut(s) 73, 119, 191, 232, 333
StyD4I CCNGG 1 cut(s) 195
TaiI ACGT 1 cut(s) 104
TaqI TCGA 1 cut(s) 352
TasI AATT 1 cut(s) 313
TatI WGTACW 1 cut(s) 287
TseI GCWGC 3 cut(s) 111, 269, 392
VpaK11BI GGWCC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.