Rw4G003430

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000160
Physical Location & Seq
Forward (+)
6895685 .. 6896551
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G003430.1

Sequence Viewer

Length: 867 bp
ATGGAGAAGCTGTGCCTAACTCTGTATTTTTCAGCGTGCAAGTTGCGACACTACATATTATCCTTTACCACTTGCATCATCGCTCAGACTGACCTGGTCAAATACATGTTGTCACGGCCTATCTTGAGAGGTCGCATTGGAAAATGGGTATTAGCTCTCTCAGAGTTTTCGCTCCAATATGTACCTCAGAAAACTGTCAAGGGGCACGCCATCGCAGACTTTCTCGCACATCATCCTACGTTAGAGATACCCGCACTGAAGGAGTTAGAGATAGCGTCCACCACTACGACTCGACCAGATTTGGCGTGCATCCCTGAGTACGAAGTTTGGTACCAAGCCACAGTCTCGCTGCAGCCTTGGGTATTGCTCTTTGATGGCTCAAGAACTGACACACTGGCTGGTGCAGGGATTGTCTTGAAAAACCCAGCCGGTGACCGCTTCTCTTATTCCTTCCAACTGGAGTTCAAATGCACAAATAATCAGGCTGAATATGAAGCTCTTATTATTGGACTCGAAGTTTTATTGGAAATGGGCGTCAAGGACTTTCAGATTCGCGGTGACTCTCAGCTCGTTATAAACCAGCTCCAGGAAAAGTATTGTTGTGCGAGTTGGTTTCTCGTACCATATCTGCATCGCGCCATCGAGCTTCTGGACCAATTTGAAGACGTCGATTTGGAACATATACCACGCGAGCGTAACTTTGCAGCTAATGAGCTCGCTCAGCTGGCCACCGGCATCACATTGAAGTATGGAGTACGCGAGCGCATTTTGAAAGTTGAGCGTCGCACATTACCTTCATGGCTTGCACGACCTGATCCACCAGATGATCCTGTGGTCGCAGTGCTAGAACCTATTGATGTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

288

Amino Acids

32.8

Weight (kDa)

5.36

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 124 - 242 4.7e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 575
AatII GACGTC 1 cut(s) 669
Acc65I GGTACC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 330
AccII CGCG 4 cut(s) 555, 636, 690, 759
AciI CCGC 3 cut(s) 252, 436, 555
AclWI GGATC 2 cut(s) 809, 821
AcoI YGGCCR 1 cut(s) 726
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 2 cut(s) 534, 666
AfaI GTAC 5 cut(s) 183, 320, 332, 621, 756
AfiI CCNNNNNNNGG 1 cut(s) 586
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 5 cut(s) 418, 466, 662, 745, 772
AjnI CCWGG 2 cut(s) 93, 585
AluBI AGCT 9 cut(s) 10, 155, 497, 568, 583, 646, 707, 715, 724
AluI AGCT 9 cut(s) 10, 155, 497, 568, 583, 646, 707, 715, 724
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 809, 821
AoxI GGCC 2 cut(s) 116, 726
ApeKI GCWGC 3 cut(s) 349, 352, 704
Asp718I GGTACC 1 cut(s) 330
AspLEI GCGC 2 cut(s) 638, 765
AspS9I GGNCC 1 cut(s) 652
AsuHPI GGTGA 2 cut(s) 443, 569
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 728
BanI GGYRCC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 717
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 717
BbvI GCAGC 3 cut(s) 336, 364, 716
BccI CCATC 3 cut(s) 218, 368, 647
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 95, 587
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 1 cut(s) 845
BfmI CTRYAG 1 cut(s) 350
BisI GCNGC 3 cut(s) 350, 353, 705
BlpI GCTNAGC 1 cut(s) 720
BlsI GCNGC 3 cut(s) 351, 354, 706
Bme1390I CCNGG 2 cut(s) 95, 587
Bme18I GGWCC 1 cut(s) 652
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 2 cut(s) 95, 587
BmsI GCATC 4 cut(s) 84, 318, 640, 744
BpiI GAAGAC 1 cut(s) 669
BpmI CTGGAG 2 cut(s) 479, 569
Bpu1102I GCTNAGC 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 145, 364
BsaHI GRCGYC 2 cut(s) 534, 666
BsaJI CCNNGG 1 cut(s) 356
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse118I RCCGGY 2 cut(s) 428, 731
Bse1I ACTGG 2 cut(s) 399, 462
BseBI CCWGG 2 cut(s) 95, 587
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 2 cut(s) 232, 309
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMII CTCAG 6 cut(s) 98, 174, 200, 306, 578, 734
BseNI ACTGG 2 cut(s) 399, 462
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 3 cut(s) 336, 364, 716
BseYI CCCAGC 1 cut(s) 424
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 4 cut(s) 555, 636, 690, 759
BshFI GGCC 2 cut(s) 118, 728
BshNI GGYRCC 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 717
BsiSI CCGG 2 cut(s) 429, 732
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 1 cut(s) 349
BsnI GGCC 2 cut(s) 118, 728
Bsp1286I GDGCHC 2 cut(s) 207, 717
Bsp143I GATC 2 cut(s) 814, 826
Bsp1720I GCTNAGC 1 cut(s) 720
BspACI CCGC 3 cut(s) 252, 436, 555
BspANI GGCC 2 cut(s) 118, 728
BspCNI CTCAG 6 cut(s) 97, 173, 199, 307, 577, 733
BspFNI CGCG 4 cut(s) 555, 636, 690, 759
BspLI GGNNCC 1 cut(s) 332
BspMAI CTGCAG 1 cut(s) 354
BspPI GGATC 2 cut(s) 809, 821
BspT107I GGYRCC 1 cut(s) 330
BsrFI RCCGGY 2 cut(s) 428, 731
BsrI ACTGG 2 cut(s) 399, 462
BssAI RCCGGY 2 cut(s) 428, 731
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 2 cut(s) 814, 826
BssNI GRCGYC 2 cut(s) 534, 666
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 95, 587
Bst4CI ACNGT 2 cut(s) 196, 343
BstACI GRCGYC 2 cut(s) 534, 666
BstC8I GCNNGC 8 cut(s) 37, 207, 307, 692, 717, 726, 761, 804
BstDEI CTNAG 6 cut(s) 84, 160, 186, 315, 564, 720
BstEII GGTNACC 1 cut(s) 431
BstF5I GGATG 2 cut(s) 232, 309
BstFNI CGCG 4 cut(s) 555, 636, 690, 759
BstHHI GCGC 2 cut(s) 638, 765
BstKTI GATC 2 cut(s) 817, 829
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 2 cut(s) 814, 826
BstMWI GCNNNNNNNGC 2 cut(s) 721, 725
BstNI CCWGG 2 cut(s) 95, 587
BstNSI RCATGY 1 cut(s) 109
BstPI GGTNACC 1 cut(s) 431
BstSCI CCNGG 2 cut(s) 93, 585
BstSFI CTRYAG 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 4 cut(s) 555, 636, 690, 759
BstV1I GCAGC 3 cut(s) 336, 364, 716
BstV2I GAAGAC 1 cut(s) 669
BsuRI GGCC 2 cut(s) 118, 728
BtgZI GCGATG 3 cut(s) 64, 196, 617
BtsCI GGATG 2 cut(s) 232, 309
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 3 cut(s) 254, 392, 846
Cac8I GCNNGC 8 cut(s) 37, 207, 307, 692, 717, 726, 761, 804
CfoI GCGC 2 cut(s) 638, 765
Cfr10I RCCGGY 2 cut(s) 428, 731
Cfr13I GGNCC 1 cut(s) 652
CseI GACGC 3 cut(s) 264, 523, 770
CsiI ACCWGGT 1 cut(s) 93
Csp6I GTAC 5 cut(s) 182, 319, 331, 620, 755
CviAII CATG 2 cut(s) 106, 798
CviQI GTAC 5 cut(s) 182, 319, 331, 620, 755
DdeI CTNAG 6 cut(s) 84, 160, 186, 315, 564, 720
DpnI GATC 2 cut(s) 816, 828
DpnII GATC 2 cut(s) 814, 826
EaeI YGGCCR 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 715
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 717
Eco47I GGWCC 1 cut(s) 652
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 278
Eco91I GGTNACC 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 715
EcoO65I GGTNACC 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 93, 585
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 2 cut(s) 109, 801
FatI CATG 2 cut(s) 105, 797
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 350, 353, 705
FokI GGATG 2 cut(s) 219, 296
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 3 cut(s) 350, 353, 705
FspBI CTAG 1 cut(s) 845
GlaI GCGC 2 cut(s) 637, 764
GluI GCNGC 3 cut(s) 350, 353, 705
GsaI CCCAGC 1 cut(s) 428
GsuI CTGGAG 2 cut(s) 479, 569
HaeIII GGCC 2 cut(s) 118, 728
HapII CCGG 2 cut(s) 429, 732
HgaI GACGC 3 cut(s) 264, 523, 770
HhaI GCGC 2 cut(s) 638, 765
Hin1I GRCGYC 2 cut(s) 534, 666
Hin1II CATG 2 cut(s) 109, 801
Hin6I GCGC 2 cut(s) 636, 763
HinP1I GCGC 2 cut(s) 636, 763
HinfI GANTC 4 cut(s) 289, 510, 550, 560
HpaII CCGG 2 cut(s) 429, 732
HphI GGTGA 2 cut(s) 443, 569
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 4 cut(s) 87, 163, 189, 549
Hpy188III TCNNGA 4 cut(s) 124, 381, 415, 650
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 2 cut(s) 671, 786
HpyAV CCTTC 3 cut(s) 253, 460, 804
HpyCH4III ACNGT 2 cut(s) 196, 343
HpyCH4IV ACGT 2 cut(s) 239, 666
HpyCH4V TGCA 9 cut(s) 39, 75, 309, 352, 404, 471, 631, 704, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 721, 725
HpyF3I CTNAG 6 cut(s) 84, 160, 186, 315, 564, 720
HpySE526I ACGT 2 cut(s) 239, 666
Hsp92I GRCGYC 2 cut(s) 534, 666
Hsp92II CATG 2 cut(s) 109, 801
HspAI GCGC 2 cut(s) 636, 763
KpnI GGTACC 1 cut(s) 334
Kzo9I GATC 2 cut(s) 814, 826
LmnI GCTCC 2 cut(s) 177, 588
Lsp1109I GCAGC 3 cut(s) 336, 364, 716
LweI GCATC 4 cut(s) 84, 318, 640, 744
MabI ACCWGGT 1 cut(s) 93
MaeI CTAG 1 cut(s) 845
MaeII ACGT 2 cut(s) 239, 666
MaeIII GTNAC 4 cut(s) 111, 431, 557, 695
MalI GATC 2 cut(s) 816, 828
MboI GATC 2 cut(s) 814, 826
MboII GAAGA 1 cut(s) 674
MhlI GDGCHC 2 cut(s) 207, 717
MlsI TGGCCA 1 cut(s) 728
MluCI AATT 1 cut(s) 656
MluNI TGGCCA 1 cut(s) 728
MlyI GAGTC 3 cut(s) 283, 504, 554
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 2 cut(s) 122, 195
Mox20I TGGCCA 1 cut(s) 728
MscI TGGCCA 1 cut(s) 728
Msp20I TGGCCA 1 cut(s) 728
MspA1I CMGCKG 1 cut(s) 724
MspI CCGG 2 cut(s) 429, 732
MspR9I CCNGG 2 cut(s) 95, 587
MvaI CCWGG 2 cut(s) 95, 587
MvnI CGCG 4 cut(s) 555, 636, 690, 759
MwoI GCNNNNNNNGC 2 cut(s) 721, 725
NdeII GATC 2 cut(s) 814, 826
NlaIII CATG 2 cut(s) 109, 801
NlaIV GGNNCC 1 cut(s) 332
NmuCI GTSAC 3 cut(s) 111, 431, 557
NspI RCATGY 1 cut(s) 109
PciI ACATGT 1 cut(s) 105
PfeI GAWTC 1 cut(s) 550
PflFI GACNNNGTC 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 3 cut(s) 351, 354, 706
PleI GAGTC 3 cut(s) 283, 504, 554
PpsI GAGTC 3 cut(s) 283, 504, 554
PscI ACATGT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 717
Psp6I CCWGG 2 cut(s) 93, 585
PspEI GGTNACC 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 93, 585
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 652
PstI CTGCAG 1 cut(s) 354
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 724
RsaI GTAC 5 cut(s) 183, 320, 332, 621, 756
RsaNI GTAC 5 cut(s) 182, 319, 331, 620, 755
SacI GAGCTC 1 cut(s) 717
SatI GCNGC 3 cut(s) 350, 353, 705
Sau3AI GATC 2 cut(s) 814, 826
Sau96I GGNCC 1 cut(s) 652
SchI GAGTC 3 cut(s) 283, 504, 554
ScrFI CCNGG 2 cut(s) 95, 587
SduI GDGCHC 2 cut(s) 207, 717
SexAI ACCWGGT 1 cut(s) 93
SfaNI GCATC 4 cut(s) 84, 318, 640, 744
SfcI CTRYAG 1 cut(s) 350
SinI GGWCC 1 cut(s) 652
SmlI CTYRAG 2 cut(s) 124, 379
SmoI CTYRAG 2 cut(s) 124, 379
Sse9I AATT 1 cut(s) 656
SsiI CCGC 3 cut(s) 252, 436, 555
SspMI CTAG 1 cut(s) 845
SstI GAGCTC 1 cut(s) 717
StyD4I CCNGG 2 cut(s) 93, 585
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 196, 343
TaiI ACGT 2 cut(s) 242, 669
TaqI TCGA 4 cut(s) 292, 513, 642, 669
TasI AATT 1 cut(s) 656
TfiI GAWTC 1 cut(s) 550
TscAI CASTG 3 cut(s) 261, 399, 846
TseFI GTSAC 3 cut(s) 111, 431, 557
TseI GCWGC 3 cut(s) 349, 352, 704
Tsp45I GTSAC 3 cut(s) 111, 431, 557
TspDTI ATGAA 2 cut(s) 507, 786
TspRI CASTG 3 cut(s) 261, 399, 846
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 652
XceI RCATGY 1 cut(s) 109
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XspI CTAG 1 cut(s) 845
ZraI GACGTC 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.