FvH4_3g22805

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000160
Physical Location & Seq
Reverse (-)
15889336 .. 15890533
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22805.t1

Sequence Viewer

Length: 702 bp
ATGTTCTTCAATGGATCTTCGAGAGTAGATGGAGCAGGGGCTAGCGTTGTCTTCATCACCTCACAAAAGCAAATATTGCCATATGCCATCACTCTTGGCGAATTGTGCTCCAACAATGTTGCGAAATACCAAGCTCTCATTATGGGGTGCTTGGGAAGAGAAGAGGCAGCCATAGCCATGGAAGAGGTTCATTCGGGAGTATGTGGAGCTCATCAATCAGGCCCTAAGTTGCATTTCCAAATAAGGCGAATGGGTTACTACTGGCCCACAATGGTCGAGGATTGCATGGAGTACACACAGAAATGTCAAGCTTGTCAATTCCACGCAAACTTCATCCATCAACCACCAGAGCCATTGCATCCTACAATCGCCTCACACCCGTTTGATGTCTGGGGGATAGATGTTGTGGGACCCATAACTCCGAAATCCTCTAGCGGCCACATATACATTTTGGCAGGCACGGATTCCTTCTCAAAGTGGTCAGAGGCGGTACTGCTTAAAGAGATAAAGAAAGAGACTATTGTAGACTTCATCAAGACATACATTATTCAACGGTATGGTGTGCCACGTTGCATCTTCACAGATAATATCAAGTACCTCTCAAATAATGCTATGCAAAAACTTAGCGAGAAGTATCACTTCAAGCTACACTTTTCTTCAATGTACAATGCATCAGTAAATGGTTTAGCGGAGGCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

234

Amino Acids

26.13

Weight (kDa)

7.13

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 59 - 107 3e-08 Integrase zinc binding domain
rve PF00665 125 - 223 1.9e-09 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 525
AciI CCGC 3 cut(s) 435, 488, 689
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 436
AfaI GTAC 4 cut(s) 293, 492, 596, 665
AgsI TTSAA 4 cut(s) 10, 551, 643, 660
AluBI AGCT 4 cut(s) 134, 209, 311, 646
AluI AGCT 4 cut(s) 134, 209, 311, 646
Alw21I GWGCWC 2 cut(s) 110, 211
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 1 cut(s) 22
AoxI GGCC 3 cut(s) 220, 263, 436
ApeKI GCWGC 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 186
AspS9I GGNCC 3 cut(s) 221, 264, 410
AsuHPI GGTGA 1 cut(s) 49
AsuNHI GCTAGC 1 cut(s) 41
AvaII GGWCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 2 cut(s) 110, 211
BbvI GCAGC 1 cut(s) 179
BccI CCATC 3 cut(s) 23, 95, 345
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 2 cut(s) 42, 432
BisI GCNGC 2 cut(s) 168, 436
BlsI GCNGC 2 cut(s) 169, 437
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 3 cut(s) 221, 264, 410
BmiI GGNNCC 2 cut(s) 411, 412
BmsI GCATC 3 cut(s) 367, 582, 680
BmtI GCTAGC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 333, 358
BseMI GCAATG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 179
BshFI GGCC 3 cut(s) 222, 265, 438
BsiHKAI GWGCWC 2 cut(s) 110, 211
BslFI GGGAC 1 cut(s) 423
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 1 cut(s) 695
BsnI GGCC 3 cut(s) 222, 265, 438
Bsp1286I GDGCHC 2 cut(s) 110, 211
Bsp1407I TGTACA 1 cut(s) 663
Bsp143I GATC 1 cut(s) 14
Bsp19I CCATGG 1 cut(s) 177
BspACI CCGC 3 cut(s) 435, 488, 689
BspANI GGCC 3 cut(s) 222, 265, 438
BspLI GGNNCC 2 cut(s) 411, 412
BspOI GCTAGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 353
BsrGI TGTACA 1 cut(s) 663
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 555
Bst6I CTCTTC 3 cut(s) 151, 156, 177
BstAPI GCANNNNNTGC 1 cut(s) 76
BstAUI TGTACA 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 43, 457
BstDEI CTNAG 2 cut(s) 225, 623
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 333, 358
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 3 cut(s) 76, 105, 173
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 3 cut(s) 222, 265, 438
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 333, 358
Cac8I GCNNGC 2 cut(s) 43, 457
Cfr13I GGNCC 3 cut(s) 221, 264, 410
Csp6I GTAC 4 cut(s) 292, 491, 595, 664
CviAII CATG 2 cut(s) 178, 286
CviQI GTAC 4 cut(s) 292, 491, 595, 664
DdeI CTNAG 2 cut(s) 225, 623
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 436
Eam1104I CTCTTC 3 cut(s) 151, 156, 177
EarI CTCTTC 3 cut(s) 151, 156, 177
Ecl136II GAGCTC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 410
Eco53kI GAGCTC 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 209
EcoO109I RGGNCCY 2 cut(s) 221, 410
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 673
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 181, 289
FalI AAGNNNNNCTT 4 cut(s) 623, 655, 635, 667
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 177, 285
FauNDI CATATG 1 cut(s) 82
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 2 cut(s) 168, 436
FokI GGATG 2 cut(s) 320, 345
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 2 cut(s) 168, 436
FspBI CTAG 2 cut(s) 42, 432
GluI GCNGC 2 cut(s) 168, 436
HaeIII GGCC 3 cut(s) 222, 265, 438
Hin1II CATG 2 cut(s) 181, 289
HindIII AAGCTT 1 cut(s) 309
HinfI GANTC 1 cut(s) 464
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 294, 526
Hpy188I TCNGA 3 cut(s) 423, 484, 701
Hpy188III TCNNGA 3 cut(s) 21, 195, 535
Hpy8I GTNNAC 2 cut(s) 294, 526
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 1 cut(s) 555
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 6 cut(s) 232, 285, 358, 573, 616, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 105, 173
HpyF3I CTNAG 2 cut(s) 225, 623
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 2 cut(s) 181, 289
KflI GGGWCCC 1 cut(s) 410
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 3 cut(s) 32, 113, 206
LpnPI CCDG 6 cut(s) 21, 204, 247, 360, 376, 441
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 3 cut(s) 367, 582, 680
MaeI CTAG 2 cut(s) 42, 432
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 1 cut(s) 254
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 7 cut(s) 9, 43, 168, 173, 194, 568, 648
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 2 cut(s) 110, 211
MluCI AATT 2 cut(s) 101, 317
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 9 cut(s) 70, 157, 178, 271, 382, 439, 478, 608, 685
Mph1103I ATGCAT 1 cut(s) 673
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 498
MslI CAYNNNNRTG 2 cut(s) 176, 301
Mva1269I GAATGC 1 cut(s) 695
MwoI GCNNNNNNNGC 3 cut(s) 76, 105, 173
NcoI CCATGG 1 cut(s) 177
NdeI CATATG 1 cut(s) 82
NdeII GATC 1 cut(s) 14
NheI GCTAGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 181, 289
NlaIV GGNNCC 2 cut(s) 411, 412
NsiI ATGCAT 1 cut(s) 673
PctI GAATGC 1 cut(s) 695
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 464
PkrI GCNGC 2 cut(s) 169, 437
PpuMI RGGWCCY 1 cut(s) 410
Psp124BI GAGCTC 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 410
PspN4I GGNNCC 2 cut(s) 411, 412
PspPI GGNCC 3 cut(s) 221, 264, 410
PspPPI RGGWCCY 1 cut(s) 410
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 4 cut(s) 293, 492, 596, 665
RsaNI GTAC 4 cut(s) 292, 491, 595, 664
RseI CAYNNNNRTG 2 cut(s) 176, 301
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 498
SatI GCNGC 2 cut(s) 168, 436
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 3 cut(s) 221, 264, 410
SduI GDGCHC 2 cut(s) 110, 211
SetI ASST 8 cut(s) 62, 136, 189, 211, 313, 571, 600, 648
SfaNI GCATC 3 cut(s) 367, 582, 680
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 2 cut(s) 176, 301
Sse9I AATT 2 cut(s) 101, 317
SsiI CCGC 3 cut(s) 435, 488, 689
SspI AATATT 1 cut(s) 75
SspMI CTAG 2 cut(s) 42, 432
SstI GAGCTC 1 cut(s) 211
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 555
TaiI ACGT 1 cut(s) 571
TaqI TCGA 2 cut(s) 20, 276
TasI AATT 2 cut(s) 101, 317
TatI WGTACW 2 cut(s) 291, 663
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 1 cut(s) 498
Tru9I TTAA 1 cut(s) 498
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 4 cut(s) 43, 179, 322, 520
TspGWI ACGGA 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 42, 432
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.