Rmu_sc0031791.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031791.1
OG0000160
Physical Location & Seq
Forward (+)
1 .. 417
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031791.1_g000001.1.cds

Sequence Viewer

Length: 200 bp
gcaaaatccagcctttttccccgctgttgaagttgcaaggacagaatgagtttgtttgggagcctaaacatcagaaggcctttgactggattaaagcctatttagctagcccgccagtgctggttcctcctaggcccggattcctattaaagttatacagtttagcggctgaggcttccattgggagcctacttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

65

Amino Acids

7.26

Weight (kDa)

9.52

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 22, 112, 166
AfiI CCNNNNNNNGG 2 cut(s) 86, 136
AgsI TTSAA 1 cut(s) 30
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AoxI GGCC 2 cut(s) 77, 133
AspA2I CCTAGG 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 137
AsuNHI GCTAGC 1 cut(s) 106
AvrII CCTAGG 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 170
BcnI CCSGG 1 cut(s) 137
BfaI CTAG 2 cut(s) 107, 131
BisI GCNGC 1 cut(s) 167
BlnI CCTAGG 1 cut(s) 130
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 3 cut(s) 62, 125, 187
BmrFI CCNGG 1 cut(s) 137
BmtI GCTAGC 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 136
Bse1I ACTGG 2 cut(s) 91, 115
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 86, 136
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 91, 115
BshFI GGCC 2 cut(s) 79, 135
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 86, 136
BsnI GGCC 2 cut(s) 79, 135
BspACI CCGC 3 cut(s) 22, 112, 166
BspANI GGCC 2 cut(s) 79, 135
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 62, 125, 187
BspOI GCTAGC 1 cut(s) 110
BsrI ACTGG 2 cut(s) 91, 115
BssECI CCNNGG 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 108, 112
BstDEI CTNAG 1 cut(s) 170
BstMWI GCNNNNNNNGC 2 cut(s) 103, 172
BstSCI CCNGG 1 cut(s) 135
BsuRI GGCC 2 cut(s) 79, 135
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 108, 112
Cfr13I GGNCC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaiI YATR 1 cut(s) 156
FauI CCCGC 2 cut(s) 29, 119
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 2 cut(s) 107, 131
GluI GCNGC 1 cut(s) 167
HaeIII GGCC 2 cut(s) 79, 135
HapII CCGG 1 cut(s) 137
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 172
HpyF3I CTNAG 1 cut(s) 170
LmnI GCTCC 2 cut(s) 60, 185
LpnPI CCDG 5 cut(s) 22, 72, 106, 128, 150
MaeI CTAG 2 cut(s) 107, 131
MnlI CCTC 2 cut(s) 137, 165
MseI TTAA 3 cut(s) 92, 148, 198
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 103, 172
NciI CCSGG 1 cut(s) 137
NheI GCTAGC 1 cut(s) 106
NlaIV GGNNCC 3 cut(s) 62, 125, 187
PceI AGGCCT 1 cut(s) 79
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 168
PspN4I GGNNCC 3 cut(s) 62, 125, 187
PspPI GGNCC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 92, 148, 198
SatI GCNGC 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 137
SetI ASST 1 cut(s) 108
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 3 cut(s) 22, 112, 166
SspMI CTAG 2 cut(s) 107, 131
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 160
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 92, 148, 198
Tru9I TTAA 3 cut(s) 92, 148, 198
TscAI CASTG 1 cut(s) 122
TspRI CASTG 1 cut(s) 122
XmaJI CCTAGG 1 cut(s) 130
XspI CTAG 2 cut(s) 107, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.