FvH4_3g31361

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000160
Physical Location & Seq
Forward (+)
25415941 .. 25417542
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31361.t1

Sequence Viewer

Length: 1602 bp
ATGAGGATTGACTCCTTACAAGCATTTGGTGACTCCCAACTGATCGTCAGACAAATAAATGGTGAGTACGCATTCCTATGGGTCAAAAATGAGAACCTTGTCCCATACTACCAACGGGTCAAATACCTTATGGGACAATTCCAAAACATAAATGTTAGCCACATTCCTAGATCAGAGAATGATAAAGCAGATGCATTGGCTAACCTGGCAGCTTCTTTAATCCAACCTGACGAAAGAGACATCCAGATAACAGTTGGGGAACGTCGATTGCTGCCTACATTACTCGAACGAATGGAAGTCACCAATGAAACACATGTGGTTTCAGTGTTCGAAGTTGAGGAAGAGTCTGATTGGCGAATGGACATGATCAAGTATTGCCAGACAGGTATACTACCTGCAGATCCAAAGAAAAGAGTCTATGTCAGGCGGACAGCACCTCGATATACGTACCTTAATAACACTCTGTATAGGATGTCCTTCGATGGAATACTCTTGAGGTGTTTATCAAAAGAAGAGGGAGTTGAAGCTCTTAAAGATGCCCATGCTGGTACATGCGGAGCTCACCAAGCTGGTCCAAAATTGGCAGCCCAATTGAAGAGAATAGGTTATTACTGGCCATCAATGGTACAAGACTCAATAAATTATGCGCGGTCATGCAAGGCGTGCCAACTACATGGAGATTTTATACACCAACCTCCACTACCTCTTCATCCCACAACTCTCTCATACCCCTTTGAAACATGGGGGTTGGATGTTGTGGGCGTCATAGCTCCTAAATCCTCACGCCTGCATCAGTACATATTGGCTGCAACAGATTACTTTTCCAAATGGAGTGAGGCAATTCCTCTTAAAGCGGTAAGAGCAGAGGATGTTGCAAAATTTATCAAGACTCACATCATCTATCGCTTCAGAGTTCCCTCCAAGATAATATCCGACAATGCCTCGTATTTCAAGTGCAAGGCCATGGTCACAATGTGTGAGAAGTATAAGATCCAACATGCATTTTCGTCCAGCTACAACCCAACAGCTAATGGCCAAGCAGAGGCTTTCAATAAAGTACTTTGCAACATCCTGAAGAAAATGGTCTCAACAAACAAAAGAGACTGGCATAATCGCCTCCCGGAGGCATTATGGGCATATCGGACCACCGTTCGCACAGCAACTGGTTGTACTCCATTCAGCTTGGTCTATGGGTCTGAAGCAGTATTGCCATTAGAAGTCCAATTGCCTTCTTTAAGGATAGCTAAAATGTTGACAAATCCAGATGAAAATGCACAAGTCAGACTGGCAGAGCTTGAAGCACTTGATGAAAAGAGACTTGCAGTTCAACAAAAACTCGAAATTTACCAAGCTCAAGTTGCAAGTGCTTTCAACAAGAAAGTTAAGTTCAGGTCATTCAAAACAGGCGACTTGGTCTTAACAGTCCGAAGGCCCATCATCGTCGCCAGGAAGTTAAAGGGAAAGTTTGAACTCAAATGGGAAGGTCCATATGTGGTCACCAAGGTCTTCACCAAAGGCGCATACAAGCTTTCAAATGCAGACGGAGATTGCATCTACCCCTGTGTCAACGAGAAGTTCGTGAAAAAATTCTATGCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

534

Amino Acids

60.87

Weight (kDa)

9.31

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 70 5.3e-08 Reverse transcriptase-like
Integrase_H2C2 PF17921 175 - 225 6.9e-08 Integrase zinc binding domain
rve PF00665 244 - 341 2.9e-12 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 403
AccI GTMKAC 1 cut(s) 388
AccII CGCG 1 cut(s) 649
AciI CCGC 4 cut(s) 427, 555, 649, 854
AclWI GGATC 2 cut(s) 395, 985
AcoI YGGCCR 2 cut(s) 614, 1033
AcsI RAATTY 3 cut(s) 878, 1341, 1586
AcuI CTGAAG 3 cut(s) 892, 1094, 1218
AcyI GRCGYC 1 cut(s) 762
AdeI CACNNNGTG 1 cut(s) 975
AfaI GTAC 7 cut(s) 68, 449, 550, 627, 797, 1059, 1171
AfiI CCNNNNNNNGG 2 cut(s) 1042, 1123
AflIII ACRYGT 1 cut(s) 313
AjnI CCWGG 2 cut(s) 204, 1445
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 4 cut(s) 231, 1090, 1095, 1309
AlwI GGATC 2 cut(s) 395, 985
AlwNI CAGNNNCTG 1 cut(s) 1163
AoxI GGCC 4 cut(s) 614, 960, 1033, 1430
ApeKI GCWGC 4 cut(s) 209, 271, 584, 806
ApoI RAATTY 3 cut(s) 878, 1341, 1586
Asp700I GAANNNNTTC 1 cut(s) 1586
AspLEI GCGC 2 cut(s) 649, 1520
AspS9I GGNCC 4 cut(s) 572, 1143, 1431, 1484
AsuC2I CCSGG 1 cut(s) 1121
AsuHPI GGTGA 6 cut(s) 41, 74, 292, 554, 1489, 1501
AsuII TTCGAA 1 cut(s) 330
AvaII GGWCC 3 cut(s) 572, 1143, 1484
BalI TGGCCA 2 cut(s) 616, 1035
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 1498
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 4 cut(s) 221, 258, 596, 793
BccI CCATC 3 cut(s) 476, 625, 1442
BciT130I CCWGG 2 cut(s) 206, 1447
BclI TGATCA 1 cut(s) 366
BcnI CCSGG 1 cut(s) 1121
BcoDI GTCTC 4 cut(s) 231, 1090, 1095, 1309
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 396
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 4 cut(s) 210, 272, 585, 807
BlsI GCNGC 4 cut(s) 211, 273, 586, 808
BmcAI AGTACT 1 cut(s) 1059
Bme1390I CCNGG 3 cut(s) 206, 1121, 1447
Bme18I GGWCC 3 cut(s) 572, 1143, 1484
BmgT120I GGNCC 4 cut(s) 572, 1143, 1431, 1484
BmrFI CCNGG 3 cut(s) 206, 1121, 1447
BmsI GCATC 4 cut(s) 181, 526, 799, 1560
BpiI GAAGAC 1 cut(s) 1498
Bpu14I TTCGAA 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 514, 1338
BpuMI CCSGG 1 cut(s) 1121
BsaAI YACGTR 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 1090
BsaJI CCNNGG 2 cut(s) 963, 1500
Bsc4I CCNNNNNNNGG 2 cut(s) 1042, 1123
Bse1I ACTGG 4 cut(s) 617, 1109, 1168, 1290
BseBI CCWGG 2 cut(s) 206, 1447
BseDI CCNNGG 2 cut(s) 963, 1500
BseGI GGATG 6 cut(s) 240, 477, 709, 757, 874, 1068
BseLI CCNNNNNNNGG 2 cut(s) 1042, 1123
BseNI ACTGG 4 cut(s) 617, 1109, 1168, 1290
BseXI GCAGC 4 cut(s) 221, 258, 596, 793
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 4 cut(s) 616, 962, 1035, 1432
BsiHKAI GWGCWC 1 cut(s) 562
BsiSI CCGG 1 cut(s) 1121
BslFI GGGAC 2 cut(s) 86, 147
BslI CCNNNNNNNGG 2 cut(s) 1042, 1123
BsmAI GTCTC 4 cut(s) 231, 1090, 1095, 1309
BsmFI GGGAC 2 cut(s) 86, 147
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 4 cut(s) 616, 962, 1035, 1432
Bso31I GGTCTC 1 cut(s) 1090
Bsp119I TTCGAA 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 562
Bsp143I GATC 5 cut(s) 42, 170, 366, 400, 990
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 4 cut(s) 427, 555, 649, 854
BspANI GGCC 4 cut(s) 616, 962, 1035, 1432
BspFNI CGCG 1 cut(s) 649
BspMAI CTGCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 395, 985
BspT104I TTCGAA 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 1090
BsrI ACTGG 4 cut(s) 617, 1109, 1168, 1290
BssECI CCNNGG 2 cut(s) 963, 1500
BssMI GATC 5 cut(s) 42, 170, 366, 400, 990
BssNAI GTATAC 1 cut(s) 389
BssNI GRCGYC 1 cut(s) 762
BssT1I CCWWGG 2 cut(s) 963, 1500
Bst1107I GTATAC 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 206, 1447
Bst4CI ACNGT 3 cut(s) 253, 1150, 1423
Bst6I CTCTTC 4 cut(s) 336, 507, 590, 711
BstACI GRCGYC 1 cut(s) 762
BstAPI GCANNNNNTGC 1 cut(s) 663
BstBAI YACGTR 1 cut(s) 447
BstBI TTCGAA 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 664, 788
BstDSI CCRYGG 1 cut(s) 963
BstEII GGTNACC 1 cut(s) 1495
BstENI CCTNNNNNAGG 1 cut(s) 1121
BstF5I GGATG 6 cut(s) 240, 477, 709, 757, 874, 1068
BstFNI CGCG 1 cut(s) 649
BstHHI GCGC 2 cut(s) 649, 1520
BstKTI GATC 5 cut(s) 45, 173, 369, 403, 993
BstMAI GTCTC 4 cut(s) 231, 1090, 1095, 1309
BstMBI GATC 5 cut(s) 42, 170, 366, 400, 990
BstMWI GCNNNNNNNGC 6 cut(s) 206, 566, 663, 860, 1133, 1358
BstNI CCWGG 2 cut(s) 206, 1447
BstNSI RCATGY 3 cut(s) 317, 555, 1001
BstPI GGTNACC 1 cut(s) 1495
BstSCI CCNGG 3 cut(s) 204, 1119, 1445
BstSFI CTRYAG 1 cut(s) 396
BstSNI TACGTA 1 cut(s) 447
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 4 cut(s) 221, 258, 596, 793
BstV2I GAAGAC 1 cut(s) 1498
BstX2I RGATCY 2 cut(s) 400, 990
BstXI CCANNNNNNTGG 1 cut(s) 674
BstYI RGATCY 2 cut(s) 400, 990
BstZ17I GTATAC 1 cut(s) 389
BsuRI GGCC 4 cut(s) 616, 962, 1035, 1432
BtgI CCRYGG 1 cut(s) 963
BtsCI GGATG 6 cut(s) 240, 477, 709, 757, 874, 1068
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 664, 788
CaiI CAGNNNCTG 1 cut(s) 1163
CfoI GCGC 2 cut(s) 649, 1520
Cfr13I GGNCC 4 cut(s) 572, 1143, 1431, 1484
CseI GACGC 1 cut(s) 751
Csp6I GTAC 7 cut(s) 67, 448, 549, 626, 796, 1058, 1170
CviAII CATG 9 cut(s) 314, 364, 542, 552, 654, 674, 741, 964, 998
CviQI GTAC 7 cut(s) 67, 448, 549, 626, 796, 1058, 1170
DpnI GATC 5 cut(s) 44, 172, 368, 402, 992
DpnII GATC 5 cut(s) 42, 170, 366, 400, 990
DraIII CACNNNGTG 1 cut(s) 975
EaeI YGGCCR 2 cut(s) 614, 1033
Eam1104I CTCTTC 4 cut(s) 336, 507, 590, 711
EarI CTCTTC 4 cut(s) 336, 507, 590, 711
EciI GGCGGA 1 cut(s) 442
Ecl136II GAGCTC 1 cut(s) 560
Eco105I TACGTA 1 cut(s) 447
Eco130I CCWWGG 2 cut(s) 963, 1500
Eco24I GRGCYC 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 1090
Eco47I GGWCC 3 cut(s) 572, 1143, 1484
Eco53kI GAGCTC 1 cut(s) 560
Eco57I CTGAAG 3 cut(s) 892, 1094, 1218
Eco91I GGTNACC 1 cut(s) 1495
EcoICRI GAGCTC 1 cut(s) 560
EcoNI CCTNNNNNAGG 1 cut(s) 1121
EcoO65I GGTNACC 1 cut(s) 1495
EcoRII CCWGG 2 cut(s) 204, 1445
EcoT14I CCWWGG 2 cut(s) 963, 1500
EcoT22I ATGCAT 2 cut(s) 196, 1003
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 963, 1500
FaeI CATG 9 cut(s) 317, 367, 545, 555, 657, 677, 744, 967, 1001
FaqI GGGAC 2 cut(s) 86, 147
FatI CATG 9 cut(s) 313, 363, 541, 551, 653, 673, 740, 963, 997
FauNDI CATATG 1 cut(s) 1489
FbaI TGATCA 1 cut(s) 366
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 4 cut(s) 210, 272, 585, 807
FokI GGATG 6 cut(s) 227, 484, 696, 764, 881, 1055
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 4 cut(s) 210, 272, 585, 807
FspBI CTAG 1 cut(s) 168
GlaI GCGC 2 cut(s) 648, 1519
GluI GCNGC 4 cut(s) 210, 272, 585, 807
HaeIII GGCC 4 cut(s) 616, 962, 1035, 1432
HapII CCGG 1 cut(s) 1121
HgaI GACGC 1 cut(s) 751
HhaI GCGC 2 cut(s) 649, 1520
Hin1I GRCGYC 1 cut(s) 762
Hin1II CATG 9 cut(s) 317, 367, 545, 555, 657, 677, 744, 967, 1001
Hin6I GCGC 2 cut(s) 647, 1518
HinP1I GCGC 2 cut(s) 647, 1518
HincII GTYRAC 2 cut(s) 1254, 1567
HindII GTYRAC 2 cut(s) 1254, 1567
HindIII AAGCTT 1 cut(s) 1526
HinfI GANTC 6 cut(s) 11, 32, 344, 414, 632, 889
HpaII CCGG 1 cut(s) 1121
HphI GGTGA 6 cut(s) 41, 74, 292, 554, 1489, 1501
Hpy166II GTNNAC 3 cut(s) 389, 1254, 1567
Hpy188I TCNGA 9 cut(s) 50, 175, 349, 911, 934, 1143, 1198, 1283, 1427
Hpy188III TCNNGA 7 cut(s) 244, 493, 886, 1072, 1262, 1579, 1599
Hpy8I GTNNAC 3 cut(s) 389, 1254, 1567
Hpy99I CGWCG 2 cut(s) 267, 1445
HpyAV CCTTC 4 cut(s) 487, 1239, 1422, 1475
HpyCH4III ACNGT 3 cut(s) 253, 1150, 1423
HpyCH4IV ACGT 2 cut(s) 262, 446
HpyF10VI GCNNNNNNNGC 6 cut(s) 206, 566, 663, 860, 1133, 1358
HpySE526I ACGT 2 cut(s) 262, 446
Hsp92I GRCGYC 1 cut(s) 762
Hsp92II CATG 9 cut(s) 317, 367, 545, 555, 657, 677, 744, 967, 1001
HspAI GCGC 2 cut(s) 647, 1518
Ksp22I TGATCA 1 cut(s) 366
Kzo9I GATC 5 cut(s) 42, 170, 366, 400, 990
LmnI GCTCC 2 cut(s) 557, 775
Lsp1109I GCAGC 4 cut(s) 221, 258, 596, 793
LweI GCATC 4 cut(s) 181, 526, 799, 1560
MaeI CTAG 1 cut(s) 168
MaeII ACGT 2 cut(s) 262, 446
MaeIII GTNAC 4 cut(s) 29, 298, 967, 1495
MalI GATC 5 cut(s) 44, 172, 368, 402, 992
MboI GATC 5 cut(s) 42, 170, 366, 400, 990
MboII GAAGA 6 cut(s) 353, 524, 607, 698, 1087, 1498
MfeI CAATTG 2 cut(s) 590, 1223
MflI RGATCY 2 cut(s) 400, 990
MhlI GDGCHC 1 cut(s) 562
MlsI TGGCCA 2 cut(s) 616, 1035
MluCI AATT 9 cut(s) 137, 578, 590, 640, 840, 878, 1223, 1341, 1586
MluNI TGGCCA 2 cut(s) 616, 1035
MlyI GAGTC 6 cut(s) 5, 26, 353, 423, 626, 883
MmeI TCCRAC 4 cut(s) 247, 729, 957, 1018
Mox20I TGGCCA 2 cut(s) 616, 1035
Mph1103I ATGCAT 2 cut(s) 196, 1003
MroXI GAANNNNTTC 1 cut(s) 1586
MscI TGGCCA 2 cut(s) 616, 1035
MseI TTAA 8 cut(s) 218, 453, 531, 849, 1235, 1383, 1418, 1454
MslI CAYNNNNRTG 1 cut(s) 76
Msp20I TGGCCA 2 cut(s) 616, 1035
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 3 cut(s) 206, 1121, 1447
MunI CAATTG 2 cut(s) 590, 1223
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 2 cut(s) 206, 1447
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 6 cut(s) 206, 566, 663, 860, 1133, 1358
NciI CCSGG 1 cut(s) 1121
NcoI CCATGG 1 cut(s) 963
NdeI CATATG 1 cut(s) 1489
NdeII GATC 5 cut(s) 42, 170, 366, 400, 990
NlaIII CATG 9 cut(s) 317, 367, 545, 555, 657, 677, 744, 967, 1001
NmuCI GTSAC 4 cut(s) 29, 298, 967, 1495
NsiI ATGCAT 2 cut(s) 196, 1003
NspI RCATGY 3 cut(s) 317, 555, 1001
NspV TTCGAA 1 cut(s) 330
PciI ACATGT 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 1575
PctI GAATGC 1 cut(s) 71
PdmI GAANNNNTTC 1 cut(s) 1586
PflFI GACNNNGTC 1 cut(s) 1412
PfoI TCCNGGA 1 cut(s) 1119
PkrI GCNGC 4 cut(s) 211, 273, 586, 808
PleI GAGTC 6 cut(s) 5, 26, 352, 422, 626, 883
PpsI GAGTC 6 cut(s) 5, 26, 352, 422, 626, 883
Ppu21I YACGTR 1 cut(s) 447
PscI ACATGT 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 204, 1445
PspEI GGTNACC 1 cut(s) 1495
PspGI CCWGG 2 cut(s) 204, 1445
PspPI GGNCC 4 cut(s) 572, 1143, 1431, 1484
PstI CTGCAG 1 cut(s) 400
PstNI CAGNNNCTG 1 cut(s) 1163
PsuI RGATCY 2 cut(s) 400, 990
PsyI GACNNNGTC 1 cut(s) 1412
RsaI GTAC 7 cut(s) 68, 449, 550, 627, 797, 1059, 1171
RsaNI GTAC 7 cut(s) 67, 448, 549, 626, 796, 1058, 1170
RseI CAYNNNNRTG 1 cut(s) 76
SacI GAGCTC 1 cut(s) 562
SaqAI TTAA 8 cut(s) 218, 453, 531, 849, 1235, 1383, 1418, 1454
SatI GCNGC 4 cut(s) 210, 272, 585, 807
Sau3AI GATC 5 cut(s) 42, 170, 366, 400, 990
Sau96I GGNCC 4 cut(s) 572, 1143, 1431, 1484
ScaI AGTACT 1 cut(s) 1059
SchI GAGTC 6 cut(s) 5, 26, 353, 423, 626, 883
ScrFI CCNGG 3 cut(s) 206, 1121, 1447
SduI GDGCHC 1 cut(s) 562
SfaNI GCATC 4 cut(s) 181, 526, 799, 1560
SfcI CTRYAG 1 cut(s) 396
SfuI TTCGAA 1 cut(s) 330
SinI GGWCC 3 cut(s) 572, 1143, 1484
SmiMI CAYNNNNRTG 1 cut(s) 76
SmlI CTYRAG 2 cut(s) 493, 1353
SmoI CTYRAG 2 cut(s) 493, 1353
SnaBI TACGTA 1 cut(s) 447
Sse9I AATT 9 cut(s) 137, 578, 590, 640, 840, 878, 1223, 1341, 1586
SsiI CCGC 4 cut(s) 427, 555, 649, 854
SspMI CTAG 1 cut(s) 168
SstI GAGCTC 1 cut(s) 562
StyD4I CCNGG 3 cut(s) 204, 1119, 1445
StyI CCWWGG 2 cut(s) 963, 1500
TaaI ACNGT 3 cut(s) 253, 1150, 1423
TaiI ACGT 2 cut(s) 265, 449
TaqI TCGA 6 cut(s) 265, 285, 330, 439, 480, 1338
TasI AATT 9 cut(s) 137, 578, 590, 640, 840, 878, 1223, 1341, 1586
TatI WGTACW 3 cut(s) 795, 1057, 1169
Tru1I TTAA 8 cut(s) 218, 453, 531, 849, 1235, 1383, 1418, 1454
Tru9I TTAA 8 cut(s) 218, 453, 531, 849, 1235, 1383, 1418, 1454
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 4 cut(s) 29, 298, 967, 1495
TseI GCWGC 4 cut(s) 209, 271, 584, 806
Tsp45I GTSAC 4 cut(s) 29, 298, 967, 1495
TspDTI ATGAA 4 cut(s) 321, 698, 1281, 1323
TspGWI ACGGA 1 cut(s) 1557
TspRI CASTG 1 cut(s) 330
Tth111I GACNNNGTC 1 cut(s) 1412
VpaK11BI GGWCC 3 cut(s) 572, 1143, 1484
XagI CCTNNNNNAGG 1 cut(s) 1121
XapI RAATTY 3 cut(s) 878, 1341, 1586
XceI RCATGY 3 cut(s) 317, 555, 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 1586
XspI CTAG 1 cut(s) 168
ZrmI AGTACT 1 cut(s) 1059
Zsp2I ATGCAT 2 cut(s) 196, 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.