Rroxscaffold_2G00107530

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000160
Physical Location & Seq
Forward (+)
31491224 .. 31495408
4185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107530.1

Sequence Viewer

Length: 528 bp
ATGCCCATGGCCGATCTTCTTGTAAATGGAGCAACACGCCATGAAATTTTATCTTTCATGGACTGCCACGCCGGGTACAATCAAATCTTTATAGCTGAAGAAGATGTGCACAAGACAGACTTTCGGATGCTCCGATGCACTTGGATATATGAATGGGTTGTTATGCCATTCGGCCTTAAAAGTGTTGCGGCTACATACCAACGGGCCATGAACATGATCTTCCATGATCTTATTAGCTGGATAGTAGAAGTATACATAGATGATGTCGTTGTCAAGTCCGGCAAGAAAATGAACCACATTACCGATTTAAGACAAGCATTCGAGAGGATACGAGCTCATAAACTCAAAATGAACCCACAAAAATGTATTTTTGGGGTTTTAGCTGGAAATTTCTTGGGCTTTCTTGTGCATAAATTGGGGATTGAGGTGGACAAGAATAAAGCAAAATCTATCATCGTGCACCACCTCCGACAAATAAGGAGTTACAATCTTTTTTGGGCAAAGTTAACTTTTTTAGACGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

175

Amino Acids

20.46

Weight (kDa)

8.98

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 11 - 134 1.2e-21 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AciI CCGC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 2 cut(s) 45, 388
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 1 cut(s) 77
AluBI AGCT 4 cut(s) 95, 237, 335, 383
AluI AGCT 4 cut(s) 95, 237, 335, 383
Alw21I GWGCWC 3 cut(s) 111, 337, 462
Alw44I GTGCAC 2 cut(s) 107, 458
AoxI GGCC 3 cut(s) 9, 172, 204
ApaLI GTGCAC 2 cut(s) 107, 458
ApoI RAATTY 2 cut(s) 45, 388
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 73
BaeGI GKGCMC 2 cut(s) 111, 462
BanII GRGCYC 1 cut(s) 337
Bbv12I GWGCWC 3 cut(s) 111, 337, 462
BciVI GTATCC 1 cut(s) 321
BcnI CCSGG 1 cut(s) 73
BfuI GTATCC 1 cut(s) 321
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 117, 125
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 132
BseSI GKGCMC 2 cut(s) 111, 462
BshFI GGCC 3 cut(s) 11, 174, 206
BsiHKAI GWGCWC 3 cut(s) 111, 337, 462
BsiSI CCGG 2 cut(s) 72, 279
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 3 cut(s) 11, 174, 206
Bsp1286I GDGCHC 3 cut(s) 111, 337, 462
Bsp143I GATC 3 cut(s) 13, 216, 226
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 1 cut(s) 188
BspANI GGCC 3 cut(s) 11, 174, 206
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 13, 216, 226
BssNAI GTATAC 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 253
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 3 cut(s) 16, 219, 229
BstMBI GATC 3 cut(s) 13, 216, 226
BstSCI CCNGG 1 cut(s) 71
BstSLI GKGCMC 2 cut(s) 111, 462
BstZ17I GTATAC 1 cut(s) 253
BsuI GTATCC 1 cut(s) 321
BsuRI GGCC 3 cut(s) 11, 174, 206
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 76
CviAII CATG 6 cut(s) 7, 41, 58, 208, 214, 224
CviJI RGCY 9 cut(s) 11, 95, 174, 191, 206, 237, 335, 383, 399
CviKI_1 RGCY 9 cut(s) 11, 95, 174, 191, 206, 237, 335, 383, 399
CviQI GTAC 1 cut(s) 76
DpnI GATC 3 cut(s) 15, 218, 228
DpnII GATC 3 cut(s) 13, 216, 226
EaeI YGGCCR 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 6 cut(s) 10, 44, 61, 211, 217, 227
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 6 cut(s) 6, 40, 57, 207, 213, 223
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 3 cut(s) 11, 174, 206
HapII CCGG 2 cut(s) 72, 279
Hin1II CATG 6 cut(s) 10, 44, 61, 211, 217, 227
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HpaI GTTAAC 1 cut(s) 507
HpaII CCGG 2 cut(s) 72, 279
Hpy166II GTNNAC 5 cut(s) 109, 253, 430, 460, 507
Hpy188I TCNGA 3 cut(s) 126, 134, 470
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 5 cut(s) 109, 253, 430, 460, 507
HpyCH4V TGCA 4 cut(s) 109, 138, 409, 460
Hsp92II CATG 6 cut(s) 10, 44, 61, 211, 217, 227
KspAI GTTAAC 1 cut(s) 507
Kzo9I GATC 3 cut(s) 13, 216, 226
LmnI GCTCC 2 cut(s) 29, 135
LpnPI CCDG 4 cut(s) 85, 223, 292, 369
LweI GCATC 2 cut(s) 117, 125
MaeIII GTNAC 1 cut(s) 482
MalI GATC 3 cut(s) 15, 218, 228
MboI GATC 3 cut(s) 13, 216, 226
MboII GAAGA 4 cut(s) 8, 110, 113, 211
MhlI GDGCHC 3 cut(s) 111, 337, 462
MluCI AATT 3 cut(s) 45, 388, 413
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 3 cut(s) 318, 418, 476
MseI TTAA 3 cut(s) 177, 308, 506
MslI CAYNNNNRTG 2 cut(s) 212, 361
MspI CCGG 2 cut(s) 72, 279
MspR9I CCNGG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 13, 216, 226
NlaIII CATG 6 cut(s) 10, 44, 61, 211, 217, 227
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PctI GAATGC 1 cut(s) 317
PkrI GCNGC 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 204
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 2 cut(s) 212, 361
SacI GAGCTC 1 cut(s) 337
SaqAI TTAA 3 cut(s) 177, 308, 506
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 3 cut(s) 13, 216, 226
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 3 cut(s) 111, 337, 462
SetI ASST 6 cut(s) 97, 239, 337, 385, 429, 468
SfaNI GCATC 2 cut(s) 117, 125
SmiMI CAYNNNNRTG 2 cut(s) 212, 361
Sse9I AATT 3 cut(s) 45, 388, 413
SsiI CCGC 1 cut(s) 188
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 321
TasI AATT 3 cut(s) 45, 388, 413
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 3 cut(s) 177, 308, 506
Tru9I TTAA 3 cut(s) 177, 308, 506
TspDTI ATGAA 6 cut(s) 46, 57, 165, 224, 305, 365
VneI GTGCAC 2 cut(s) 107, 458
XapI RAATTY 2 cut(s) 45, 388
XmiI GTMKAC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.