Rroxscaffold_177G00434350

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000177
OG0000160
Physical Location & Seq
Forward (+)
259924 .. 260865
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_177G00434350.1

Sequence Viewer

Length: 516 bp
ATGTCCAAAGCGATGTGGCAAGAACACAAAGATCCGAGCGAGCAGCGCTTGGCGGCTTTGGATAATTTAGTCATGGAAAAACAGCGTATCACTCGCGCCTATGATAAGCGGACATGTGGCCGTAGTTACAAAGAGGGGGACCTTGTTTGGAAAGAGGTTCTGCCCTTTGGAGAGAAATTGACCGCCGCGGCAAATGGACTCCGTGATGGGAGGGACCCTTTGTTGTTCACCGTATTTTGGAGCGCGGAGCTTTTCACCTCAAAGATCTTGATGGCGACCTCCATCGCAACCATCAATGGGCGTTACATTCGCAATTATAAGGCCAAAAGTGGCTTGAAAGGTCATAAGGATTGCAGATCTTCTAAGAGTTTCCGGACCTTGTGGCGACGAAGGGGCTGTGCTATGATCACTTGTACTTTTGTTCTCTTCACCCACATCCCTCCTCCGATCCGAGTCGCACTGCTTCCACCCGTACCGAAAGACCGAAGGAAGAGGAAAGGAAATAATCCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

171

Amino Acids

19.63

Weight (kDa)

10.35

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AccII CGCG 3 cut(s) 96, 188, 245
AccIII TCCGGA 1 cut(s) 372
AciI CCGC 6 cut(s) 53, 109, 183, 186, 188, 245
AclWI GGATC 2 cut(s) 26, 442
AcoI YGGCCR 1 cut(s) 118
AfaI GTAC 2 cut(s) 415, 474
AfeI AGCGCT 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 237, 297
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 337
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
AlwI GGATC 2 cut(s) 26, 442
Aor13HI TCCGGA 1 cut(s) 372
Aor51HI AGCGCT 1 cut(s) 47
AoxI GGCC 2 cut(s) 118, 321
ApeKI GCWGC 1 cut(s) 43
AspLEI GCGC 3 cut(s) 48, 98, 245
AspS9I GGNCC 3 cut(s) 139, 214, 375
AsuHPI GGTGA 3 cut(s) 220, 247, 421
AvaII GGWCC 3 cut(s) 139, 214, 375
BbvI GCAGC 1 cut(s) 55
BccI CCATC 4 cut(s) 200, 265, 290, 299
BceAI ACGGC 1 cut(s) 105
BclI TGATCA 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 49
BglII AGATCT 2 cut(s) 264, 356
BisI GCNGC 4 cut(s) 44, 54, 186, 189
BlsI GCNGC 4 cut(s) 45, 55, 187, 190
Bme18I GGWCC 3 cut(s) 139, 214, 375
BmgT120I GGNCC 3 cut(s) 139, 214, 375
BmiI GGNNCC 3 cut(s) 140, 215, 216
BsaJI CCNNGG 1 cut(s) 186
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 297
BseAI TCCGGA 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 435
BseLI CCNNNNNNNGG 2 cut(s) 237, 297
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 3 cut(s) 96, 188, 245
BshFI GGCC 2 cut(s) 120, 323
BsiSI CCGG 1 cut(s) 373
BslFI GGGAC 2 cut(s) 152, 227
BslI CCNNNNNNNGG 2 cut(s) 237, 297
BsmFI GGGAC 2 cut(s) 152, 227
BsnI GGCC 2 cut(s) 120, 323
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 5 cut(s) 31, 264, 356, 405, 447
BspACI CCGC 6 cut(s) 53, 109, 183, 186, 188, 245
BspANI GGCC 2 cut(s) 120, 323
BspEI TCCGGA 1 cut(s) 372
BspFNI CGCG 3 cut(s) 96, 188, 245
BspHI TCATGA 1 cut(s) 512
BspLI GGNNCC 3 cut(s) 140, 215, 216
BspPI GGATC 2 cut(s) 26, 442
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 5 cut(s) 31, 264, 356, 405, 447
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 431, 485
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 435
BstFNI CGCG 3 cut(s) 96, 188, 245
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 3 cut(s) 48, 98, 245
BstKTI GATC 5 cut(s) 34, 267, 359, 408, 450
BstMBI GATC 5 cut(s) 31, 264, 356, 405, 447
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 117
BstUI CGCG 3 cut(s) 96, 188, 245
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 3 cut(s) 31, 264, 356
BstYI RGATCY 3 cut(s) 31, 264, 356
BsuRI GGCC 2 cut(s) 120, 323
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 2 cut(s) 26, 268
BtsCI GGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 41
CciI TCATGA 1 cut(s) 512
CfoI GCGC 3 cut(s) 48, 98, 245
Cfr13I GGNCC 3 cut(s) 139, 214, 375
Cfr42I CCGCGG 1 cut(s) 189
Csp6I GTAC 2 cut(s) 414, 473
CviAII CATG 3 cut(s) 73, 114, 513
CviJI RGCY 6 cut(s) 56, 120, 250, 323, 333, 396
CviKI_1 RGCY 6 cut(s) 56, 120, 250, 323, 333, 396
CviQI GTAC 2 cut(s) 414, 473
DdeI CTNAG 1 cut(s) 363
DpnI GATC 5 cut(s) 33, 266, 358, 407, 449
DpnII GATC 5 cut(s) 31, 264, 356, 405, 447
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 431, 485
EarI CTCTTC 2 cut(s) 431, 485
Eco47I GGWCC 3 cut(s) 139, 214, 375
Eco47III AGCGCT 1 cut(s) 47
EcoO109I RGGNCCY 2 cut(s) 139, 214
FaeI CATG 3 cut(s) 76, 117, 516
FaiI YATR 7 cut(s) 74, 102, 115, 318, 345, 404, 514
FaqI GGGAC 2 cut(s) 152, 227
FatI CATG 3 cut(s) 72, 113, 512
FbaI TGATCA 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 44, 54, 186, 189
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 4 cut(s) 44, 54, 186, 189
GlaI GCGC 3 cut(s) 47, 97, 244
GluI GCNGC 4 cut(s) 44, 54, 186, 189
HaeII RGCGCY 1 cut(s) 49
HaeIII GGCC 2 cut(s) 120, 323
HapII CCGG 1 cut(s) 373
HhaI GCGC 3 cut(s) 48, 98, 245
Hin1II CATG 3 cut(s) 76, 117, 516
Hin6I GCGC 3 cut(s) 46, 96, 243
HinP1I GCGC 3 cut(s) 46, 96, 243
HinfI GANTC 2 cut(s) 198, 453
HpaII CCGG 1 cut(s) 373
HphI GGTGA 3 cut(s) 220, 247, 421
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 3 cut(s) 36, 447, 452
Hpy188III TCNNGA 3 cut(s) 268, 373, 513
Hpy8I GTNNAC 1 cut(s) 228
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 2 cut(s) 384, 480
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 363
Hsp92II CATG 3 cut(s) 76, 117, 516
HspAI GCGC 3 cut(s) 46, 96, 243
KflI GGGWCCC 1 cut(s) 214
Kpn2I TCCGGA 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 405
KspI CCGCGG 1 cut(s) 189
Kzo9I GATC 5 cut(s) 31, 264, 356, 405, 447
LmnI GCTCC 2 cut(s) 240, 247
LpnPI CCDG 1 cut(s) 386
Lsp1109I GCAGC 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 125, 302
MalI GATC 5 cut(s) 33, 266, 358, 407, 449
MboI GATC 5 cut(s) 31, 264, 356, 405, 447
MboII GAAGA 3 cut(s) 351, 418, 502
MflI RGATCY 3 cut(s) 31, 264, 356
MluCI AATT 3 cut(s) 64, 176, 313
MlyI GAGTC 2 cut(s) 192, 462
MnlI CCTC 8 cut(s) 127, 148, 204, 268, 289, 450, 453, 486
MroI TCCGGA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 373
MvnI CGCG 3 cut(s) 96, 188, 245
MwoI GCNNNNNNNGC 1 cut(s) 45
NdeII GATC 5 cut(s) 31, 264, 356, 405, 447
NlaIII CATG 3 cut(s) 76, 117, 516
NlaIV GGNNCC 3 cut(s) 140, 215, 216
NspI RCATGY 1 cut(s) 117
PagI TCATGA 1 cut(s) 512
PciI ACATGT 1 cut(s) 113
PkrI GCNGC 4 cut(s) 45, 55, 187, 190
PleI GAGTC 2 cut(s) 192, 461
PpsI GAGTC 2 cut(s) 192, 461
PpuMI RGGWCCY 2 cut(s) 139, 214
PscI ACATGT 1 cut(s) 113
PsiI TTATAA 1 cut(s) 318
Psp5II RGGWCCY 2 cut(s) 139, 214
PspN4I GGNNCC 3 cut(s) 140, 215, 216
PspPI GGNCC 3 cut(s) 139, 214, 375
PspPPI RGGWCCY 2 cut(s) 139, 214
PsuI RGATCY 3 cut(s) 31, 264, 356
RsaI GTAC 2 cut(s) 415, 474
RsaNI GTAC 2 cut(s) 414, 473
SacII CCGCGG 1 cut(s) 189
SatI GCNGC 4 cut(s) 44, 54, 186, 189
Sau3AI GATC 5 cut(s) 31, 264, 356, 405, 447
Sau96I GGNCC 3 cut(s) 139, 214, 375
SchI GAGTC 2 cut(s) 192, 462
SetI ASST 7 cut(s) 144, 159, 252, 260, 281, 343, 380
Sfr303I CCGCGG 1 cut(s) 189
SgrBI CCGCGG 1 cut(s) 189
SinI GGWCC 3 cut(s) 139, 214, 375
Sse9I AATT 3 cut(s) 64, 176, 313
SsiI CCGC 6 cut(s) 53, 109, 183, 186, 188, 245
TaaI ACNGT 1 cut(s) 232
TaqII GACCGA 1 cut(s) 498
TasI AATT 3 cut(s) 64, 176, 313
TatI WGTACW 1 cut(s) 413
TauI GCSGC 3 cut(s) 56, 188, 191
TscAI CASTG 1 cut(s) 465
TseI GCWGC 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 465
VpaK11BI GGWCC 3 cut(s) 139, 214, 375
XceI RCATGY 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.