Rmu_sc0002102.1_g000002

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002102.1
OG0000160
Physical Location & Seq
Reverse (-)
1537 .. 2526
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002102.1_g000002.1.cds

Sequence Viewer

Length: 990 bp
atgaccttaaaagatgagaagccttcaagctcaacagcaatacaacctaaagtgatcttcaaatattcaaagaaagaccaacgagaacctggacaaaaggttttaactccaatcagagatacaattgaggcactcatgacaagttacactaagcctcttcacaagattgatcagtctattccagagggaaatttggtcatttccataaaatttgggaacaaacaaagccagaacaagcgcattgtctcattcagaaatacaacatctgctccactaagggtcaaatcaagaaggctcaggaacaggccagggaacaatgcactcaagatcacagttcaacatgtgaatggcatgcttaaagcaaaagttcccgaagcaaacaaacttacagatcacgaaagggttgtttttcaggaagaacaggtgatggagaagccatcacgtgtctcagtctttcagcgtctagggacgaacaatccaccccgcgtcccaatctttcagcgcttggaaactcaaaagcaaccccgtgtctcagctttccagcgtttgggcaacacttcttcattaccgtccaacgagtcacaagcaagcaagaaatggaaggttaaaagacacacaagggtgatcttcaaaaagacagtgggttctaagccggacaaaaacttggaagaatcagtgtcagtgaactgtgtttcgtttaaagaccaagatcaggccccagaattcattgataccgcccagcctgctcccccacaaatggaggatggaggacaagcaaccattgatgacctccaagagatcaaccttgggacagctgaggacccaaaacctatatttgtgagtgctctgttgacgccagatgaattaaaaggctacagatctctcctccaggaatacaaagatgttttcgcttggggctatcaagacatgcctggtttagatccaaaagtggcagttcacaagttagcagtctcggatcagaaacgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

329

Amino Acids

37.18

Weight (kDa)

9.8

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 547
AccII CGCG 1 cut(s) 486
AciI CCGC 2 cut(s) 484, 735
AclWI GGATC 2 cut(s) 935, 984
AcsI RAATTY 3 cut(s) 190, 209, 722
AcvI CACGTG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 854
AfeI AGCGCT 1 cut(s) 503
AfiI CCNNNNNNNGG 3 cut(s) 547, 712, 757
AflIII ACRYGT 2 cut(s) 340, 442
AgsI TTSAA 5 cut(s) 27, 61, 69, 338, 631
AjnI CCWGG 4 cut(s) 88, 307, 888, 931
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 3 cut(s) 30, 536, 815
AluI AGCT 3 cut(s) 30, 536, 815
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 4 cut(s) 250, 451, 535, 976
AlwI GGATC 2 cut(s) 935, 984
Aor51HI AGCGCT 1 cut(s) 503
AoxI GGCC 2 cut(s) 305, 714
ApoI RAATTY 3 cut(s) 190, 209, 722
AspLEI GCGC 2 cut(s) 240, 504
AspS9I GGNCC 2 cut(s) 715, 820
AsuHPI GGTGA 2 cut(s) 436, 634
AvaII GGWCC 1 cut(s) 820
BbrPI CACGTG 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 847
BbvCI CCTCAGC 1 cut(s) 816
BccI CCATC 3 cut(s) 421, 445, 758
BciT130I CCWGG 4 cut(s) 90, 309, 890, 933
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 4 cut(s) 250, 451, 535, 976
BfaI CTAG 2 cut(s) 464, 988
BfmI CTRYAG 1 cut(s) 874
BfoI RGCGCY 1 cut(s) 505
BglII AGATCT 1 cut(s) 878
Bme1390I CCNGG 4 cut(s) 90, 309, 890, 933
Bme18I GGWCC 1 cut(s) 820
BmgT120I GGNCC 2 cut(s) 715, 820
BmiI GGNNCC 2 cut(s) 717, 822
BmrFI CCNGG 4 cut(s) 90, 309, 890, 933
BpmI CTGGAG 1 cut(s) 872
Bpu10I CCTNAGC 2 cut(s) 296, 816
BpuEI CTTGAG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 443
BsaHI GRCGYC 1 cut(s) 854
BsaJI CCNNGG 2 cut(s) 308, 805
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 3 cut(s) 547, 712, 757
BseBI CCWGG 4 cut(s) 90, 309, 890, 933
BseDI CCNNGG 2 cut(s) 308, 805
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 3 cut(s) 547, 712, 757
BseMII CTCAG 4 cut(s) 310, 462, 546, 807
BseRI GAGGAG 1 cut(s) 875
BseYI CCCAGC 1 cut(s) 738
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 2 cut(s) 307, 716
BsiHKAI GWGCWC 1 cut(s) 847
BsiSI CCGG 1 cut(s) 653
BslFI GGGAC 3 cut(s) 473, 481, 823
BslI CCNNNNNNNGG 3 cut(s) 547, 712, 757
BsmAI GTCTC 4 cut(s) 250, 451, 535, 976
BsmFI GGGAC 3 cut(s) 473, 481, 823
BsnI GGCC 2 cut(s) 307, 716
Bsp1286I GDGCHC 1 cut(s) 847
BspACI CCGC 2 cut(s) 484, 735
BspANI GGCC 2 cut(s) 307, 716
BspCNI CTCAG 4 cut(s) 309, 461, 545, 808
BspFNI CGCG 1 cut(s) 486
BspHI TCATGA 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 717, 822
BspPI GGATC 2 cut(s) 935, 984
BssECI CCNNGG 2 cut(s) 308, 805
BssNI GRCGYC 1 cut(s) 854
BssT1I CCWWGG 1 cut(s) 805
Bst2UI CCWGG 4 cut(s) 90, 309, 890, 933
Bst4CI ACNGT 4 cut(s) 334, 570, 640, 689
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 854
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 3 cut(s) 353, 589, 744
BstDEI CTNAG 7 cut(s) 150, 275, 296, 448, 532, 648, 816
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 1 cut(s) 486
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 2 cut(s) 240, 504
BstMAI GTCTC 4 cut(s) 250, 451, 535, 976
BstMWI GCNNNNNNNGC 1 cut(s) 743
BstNI CCWGG 4 cut(s) 90, 309, 890, 933
BstNSI RCATGY 3 cut(s) 344, 355, 931
BstSCI CCNGG 4 cut(s) 88, 307, 888, 931
BstSFI CTRYAG 1 cut(s) 874
BstUI CGCG 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 878, 940
BstYI RGATCY 2 cut(s) 878, 940
BsuRI GGCC 2 cut(s) 307, 716
BtsCI GGATG 1 cut(s) 769
BtsIMutI CAGTG 3 cut(s) 645, 681, 687
Cac8I GCNNGC 3 cut(s) 353, 589, 744
CciI TCATGA 1 cut(s) 135
CfoI GCGC 2 cut(s) 240, 504
Cfr13I GGNCC 2 cut(s) 715, 820
CseI GACGC 3 cut(s) 449, 475, 862
CviAII CATG 4 cut(s) 136, 341, 352, 928
DdeI CTNAG 7 cut(s) 150, 275, 296, 448, 532, 648, 816
DraI TTTAAA 1 cut(s) 700
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 820
Eco47III AGCGCT 1 cut(s) 503
Eco72I CACGTG 1 cut(s) 443
EcoO109I RGGNCCY 2 cut(s) 715, 820
EcoRI GAATTC 1 cut(s) 722
EcoRII CCWGG 4 cut(s) 88, 307, 888, 931
EcoT14I CCWWGG 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 805
FaeI CATG 4 cut(s) 139, 344, 355, 931
FaiI YATR 6 cut(s) 137, 206, 342, 353, 833, 929
FaqI GGGAC 3 cut(s) 473, 481, 823
FatI CATG 4 cut(s) 135, 340, 351, 927
FauI CCCGC 1 cut(s) 491
FbaI TGATCA 1 cut(s) 169
FokI GGATG 1 cut(s) 776
FspBI CTAG 2 cut(s) 464, 988
GlaI GCGC 2 cut(s) 239, 503
GsaI CCCAGC 1 cut(s) 742
GsuI CTGGAG 1 cut(s) 872
HaeII RGCGCY 1 cut(s) 505
HaeIII GGCC 2 cut(s) 307, 716
HapII CCGG 1 cut(s) 653
HgaI GACGC 3 cut(s) 449, 475, 862
HhaI GCGC 2 cut(s) 240, 504
Hin1I GRCGYC 1 cut(s) 854
Hin1II CATG 4 cut(s) 139, 344, 355, 931
Hin6I GCGC 2 cut(s) 238, 502
HinP1I GCGC 2 cut(s) 238, 502
HincII GTYRAC 1 cut(s) 852
HindII GTYRAC 1 cut(s) 852
HinfI GANTC 2 cut(s) 578, 671
HpaII CCGG 1 cut(s) 653
HphI GGTGA 2 cut(s) 436, 634
Hpy166II GTNNAC 3 cut(s) 685, 852, 958
Hpy188I TCNGA 4 cut(s) 116, 254, 976, 981
Hpy188III TCNNGA 9 cut(s) 136, 182, 288, 298, 325, 371, 395, 413, 923
Hpy8I GTNNAC 3 cut(s) 685, 852, 958
HpyAV CCTTC 3 cut(s) 33, 285, 595
HpyCH4III ACNGT 4 cut(s) 334, 570, 640, 689
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 743
HpyF3I CTNAG 7 cut(s) 150, 275, 296, 448, 532, 648, 816
HpySE526I ACGT 1 cut(s) 442
Hsp92I GRCGYC 1 cut(s) 854
Hsp92II CATG 4 cut(s) 139, 344, 355, 931
HspAI GCGC 2 cut(s) 238, 502
Ksp22I TGATCA 1 cut(s) 169
LmnI GCTCC 2 cut(s) 274, 751
MaeI CTAG 2 cut(s) 464, 988
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 2 cut(s) 143, 579
MboII GAAGA 6 cut(s) 49, 149, 428, 552, 619, 680
MfeI CAATTG 1 cut(s) 123
MflI RGATCY 2 cut(s) 878, 940
MhlI GDGCHC 1 cut(s) 847
MluCI AATT 5 cut(s) 123, 190, 209, 722, 863
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 8 cut(s) 121, 165, 178, 754, 761, 800, 811, 896
MseI TTAA 6 cut(s) 8, 104, 357, 606, 699, 866
MslI CAYNNNNRTG 2 cut(s) 345, 620
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 1 cut(s) 653
MspR9I CCNGG 4 cut(s) 90, 309, 890, 933
MunI CAATTG 1 cut(s) 123
MvaI CCWGG 4 cut(s) 90, 309, 890, 933
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 743
NlaIII CATG 4 cut(s) 139, 344, 355, 931
NlaIV GGNNCC 2 cut(s) 717, 822
NmuCI GTSAC 1 cut(s) 579
NspI RCATGY 3 cut(s) 344, 355, 931
OliI CACNNNNGTG 1 cut(s) 620
PaeI GCATGC 1 cut(s) 355
PagI TCATGA 1 cut(s) 135
PciI ACATGT 1 cut(s) 340
PfeI GAWTC 1 cut(s) 671
PflMI CCANNNNNTGG 1 cut(s) 547
PfoI TCCNGGA 1 cut(s) 888
PleI GAGTC 1 cut(s) 586
PmaCI CACGTG 1 cut(s) 443
PmlI CACGTG 1 cut(s) 443
PpsI GAGTC 1 cut(s) 586
Ppu21I YACGTR 1 cut(s) 443
PpuMI RGGWCCY 1 cut(s) 820
PscI ACATGT 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 4 cut(s) 88, 307, 888, 931
PspCI CACGTG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 738
PspGI CCWGG 4 cut(s) 88, 307, 888, 931
PspN4I GGNNCC 2 cut(s) 717, 822
PspPI GGNCC 2 cut(s) 715, 820
PspPPI RGGWCCY 1 cut(s) 820
PsuI RGATCY 2 cut(s) 878, 940
PvuII CAGCTG 1 cut(s) 815
RseI CAYNNNNRTG 2 cut(s) 345, 620
SaqAI TTAA 6 cut(s) 8, 104, 357, 606, 699, 866
Sau96I GGNCC 2 cut(s) 715, 820
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 4 cut(s) 90, 309, 890, 933
SduI GDGCHC 1 cut(s) 847
SfcI CTRYAG 1 cut(s) 874
SinI GGWCC 1 cut(s) 820
SmiMI CAYNNNNRTG 2 cut(s) 345, 620
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 355
Sse9I AATT 5 cut(s) 123, 190, 209, 722, 863
SsiI CCGC 2 cut(s) 484, 735
SspI AATATT 1 cut(s) 65
SspMI CTAG 2 cut(s) 464, 988
StyD4I CCNGG 4 cut(s) 88, 307, 888, 931
StyI CCWWGG 1 cut(s) 805
TaaI ACNGT 4 cut(s) 334, 570, 640, 689
TaiI ACGT 1 cut(s) 445
TasI AATT 5 cut(s) 123, 190, 209, 722, 863
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 6 cut(s) 8, 104, 357, 606, 699, 866
Tru9I TTAA 6 cut(s) 8, 104, 357, 606, 699, 866
TscAI CASTG 3 cut(s) 645, 681, 687
TseFI GTSAC 1 cut(s) 579
Tsp45I GTSAC 1 cut(s) 579
TspDTI ATGAA 3 cut(s) 552, 715, 876
TspRI CASTG 3 cut(s) 645, 681, 687
Van91I CCANNNNNTGG 1 cut(s) 547
VpaK11BI GGWCC 1 cut(s) 820
XapI RAATTY 3 cut(s) 190, 209, 722
XceI RCATGY 3 cut(s) 344, 355, 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XspI CTAG 2 cut(s) 464, 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.