Rmu_sc0038715.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038715.1
OG0000160
Physical Location & Seq
Reverse (-)
2 .. 543
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038715.1_g000001.1.cds

Sequence Viewer

Length: 493 bp
ctggatcaattcaatgacgccgatttggaatacatccctcgcgagcgcaatttcgcagccaatgagctcgctcaactggccacaggcattacattgaagtatggggttcgcgagcgtattttgaaagtcgagcgcattacattgaagtgtggggttcgcgagcgtattctgaaagtcgagcgtcgcacactaccttcatggcttgcacggcctgatccgcccgatgatccagtggtcgcggtgctagaacctattgatgtggattggcgcatcccgctgatcgattacgtcaaacagccaagccccaccaccgacacgaagatccgttttcttgccttaaactacttcctcacaggtaatgagttgcgacgacgtggggaagatggcatagacttccggtgtgtctatggccgtgaagcaaaacgattaatgcgtgaagcgcacacagggatatgcggagcccatcaagcaggacctaagatgcgttggctta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

164

Amino Acids

18.99

Weight (kDa)

9.07

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 42, 111, 159, 239
AciI CCGC 4 cut(s) 218, 239, 275, 456
AclWI GGATC 4 cut(s) 12, 209, 221, 316
AcoI YGGCCR 2 cut(s) 78, 409
AcyI GRCGYC 1 cut(s) 18
AgsI TTSAA 4 cut(s) 13, 97, 124, 145
AjiI CACGTC 1 cut(s) 374
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 69
AlwI GGATC 4 cut(s) 12, 209, 221, 316
AoxI GGCC 3 cut(s) 78, 209, 409
ApeKI GCWGC 1 cut(s) 56
AseI ATTAAT 1 cut(s) 428
AspLEI GCGC 4 cut(s) 48, 135, 270, 442
AspS9I GGNCC 1 cut(s) 473
AvaII GGWCC 1 cut(s) 473
BalI TGGCCA 1 cut(s) 80
BanII GRGCYC 2 cut(s) 69, 463
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 377, 471
BceAI ACGGC 2 cut(s) 224, 396
BfaI CTAG 1 cut(s) 245
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 473
BmgBI CACGTC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 460
BmsI GCATC 2 cut(s) 279, 471
Bsa29I ATCGAT 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 396
Bse1I ACTGG 2 cut(s) 81, 230
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 2 cut(s) 33, 270
BseNI ACTGG 2 cut(s) 81, 230
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 4 cut(s) 42, 111, 159, 239
BshFI GGCC 3 cut(s) 80, 211, 411
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 397
BsnI GGCC 3 cut(s) 80, 211, 411
Bsp1286I GDGCHC 2 cut(s) 69, 463
Bsp143I GATC 5 cut(s) 4, 214, 226, 279, 321
Bsp68I TCGCGA 3 cut(s) 42, 111, 159
BspACI CCGC 4 cut(s) 218, 239, 275, 456
BspANI GGCC 3 cut(s) 80, 211, 411
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 4 cut(s) 42, 111, 159, 239
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 4 cut(s) 12, 209, 221, 316
BsrI ACTGG 2 cut(s) 81, 230
BssMI GATC 5 cut(s) 4, 214, 226, 279, 321
BssNI GRCGYC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 5 cut(s) 44, 69, 113, 161, 204
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 2 cut(s) 33, 270
BstFNI CGCG 4 cut(s) 42, 111, 159, 239
BstHHI GCGC 4 cut(s) 48, 135, 270, 442
BstKTI GATC 5 cut(s) 7, 217, 229, 282, 324
BstMBI GATC 5 cut(s) 4, 214, 226, 279, 321
BstMWI GCNNNNNNNGC 6 cut(s) 77, 208, 217, 274, 439, 467
BstUI CGCG 4 cut(s) 42, 111, 159, 239
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 3 cut(s) 80, 211, 411
BsuTUI ATCGAT 1 cut(s) 282
BtrI CACGTC 1 cut(s) 374
BtsCI GGATG 2 cut(s) 33, 270
BtsIMutI CAGTG 1 cut(s) 237
BtuMI TCGCGA 3 cut(s) 42, 111, 159
Cac8I GCNNGC 5 cut(s) 44, 69, 113, 161, 204
CfoI GCGC 4 cut(s) 48, 135, 270, 442
Cfr13I GGNCC 1 cut(s) 473
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 2 cut(s) 26, 170
CviAII CATG 1 cut(s) 198
DdeI CTNAG 1 cut(s) 477
DpnI GATC 5 cut(s) 6, 216, 228, 281, 323
DpnII GATC 5 cut(s) 4, 214, 226, 279, 321
EaeI YGGCCR 2 cut(s) 78, 409
EciI GGCGGA 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 2 cut(s) 69, 463
Eco47I GGWCC 1 cut(s) 473
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 473
EcoT38I GRGCYC 2 cut(s) 69, 463
FaeI CATG 1 cut(s) 201
FaiI YATR 5 cut(s) 102, 199, 389, 408, 454
FatI CATG 1 cut(s) 197
FauI CCCGC 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 20, 257
FriOI GRGCYC 2 cut(s) 69, 463
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 245
GlaI GCGC 4 cut(s) 47, 134, 269, 441
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 3 cut(s) 80, 211, 411
HapII CCGG 1 cut(s) 397
HgaI GACGC 2 cut(s) 26, 170
HhaI GCGC 4 cut(s) 48, 135, 270, 442
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 4 cut(s) 46, 133, 268, 440
HinP1I GCGC 4 cut(s) 46, 133, 268, 440
HpaII CCGG 1 cut(s) 397
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 3 cut(s) 41, 110, 158
Hpy99I CGWCG 3 cut(s) 186, 372, 375
HpyAV CCTTC 1 cut(s) 204
HpyCH4IV ACGT 2 cut(s) 288, 373
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 208, 217, 274, 439, 467
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 2 cut(s) 288, 373
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 4 cut(s) 46, 133, 268, 440
Kzo9I GATC 5 cut(s) 4, 214, 226, 279, 321
LmnI GCTCC 1 cut(s) 458
LpnPI CCDG 8 cut(s) 62, 69, 225, 243, 339, 410, 432, 456
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 279, 471
MaeI CTAG 1 cut(s) 245
MaeII ACGT 2 cut(s) 288, 373
MalI GATC 5 cut(s) 6, 216, 228, 281, 323
MboI GATC 5 cut(s) 4, 214, 226, 279, 321
MboII GAAGA 2 cut(s) 331, 392
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 2 cut(s) 69, 463
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 2 cut(s) 8, 49
MluNI TGGCCA 1 cut(s) 80
MnlI CCTC 2 cut(s) 48, 359
Mox20I TGGCCA 1 cut(s) 80
MscI TGGCCA 1 cut(s) 80
MseI TTAA 2 cut(s) 338, 428
MslI CAYNNNNRTG 1 cut(s) 145
Msp20I TGGCCA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 277
MspI CCGG 1 cut(s) 397
MvnI CGCG 4 cut(s) 42, 111, 159, 239
MwoI GCNNNNNNNGC 6 cut(s) 77, 208, 217, 274, 439, 467
NdeII GATC 5 cut(s) 4, 214, 226, 279, 321
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 460
NruI TCGCGA 3 cut(s) 42, 111, 159
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PkrI GCNGC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 473
PshBI ATTAAT 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 473
PspPPI RGGWCCY 1 cut(s) 473
PsuI RGATCY 1 cut(s) 321
RruI TCGCGA 3 cut(s) 42, 111, 159
RseI CAYNNNNRTG 1 cut(s) 145
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 2 cut(s) 338, 428
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 5 cut(s) 4, 214, 226, 279, 321
Sau96I GGNCC 1 cut(s) 473
SduI GDGCHC 2 cut(s) 69, 463
SetI ASST 7 cut(s) 69, 196, 253, 291, 358, 376, 478
SfaNI GCATC 2 cut(s) 279, 471
SinI GGWCC 1 cut(s) 473
SmiMI CAYNNNNRTG 1 cut(s) 145
Sse9I AATT 2 cut(s) 8, 49
SsiI CCGC 4 cut(s) 218, 239, 275, 456
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 69
TaiI ACGT 2 cut(s) 291, 376
TaqI TCGA 3 cut(s) 129, 177, 282
TasI AATT 2 cut(s) 8, 49
Tru1I TTAA 2 cut(s) 338, 428
Tru9I TTAA 2 cut(s) 338, 428
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 473
VspI ATTAAT 1 cut(s) 428
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.