Rroxscaffold_7G00158300

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000160
Physical Location & Seq
Forward (+)
1794638 .. 1795312
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158300.1

Sequence Viewer

Length: 675 bp
ATGGGTGGTGAAGTTGATAAACCGGCAAAGGAATGGGGAATACGGTTCGTCCATTCCGGTCCATATTATGCTCGCCTAACGGTCAAGCGAGAGGCCAGCAACAAAATCATCATCACTTTGTTGAAGAAAATGTTGGAAGCTAATCCGCGACAATGGCATGAGACCCTTTATGAGACTCTTTGGGCCTACCGCACATCAAAGCGAAATCCCACCGCGACTACACCTTATGCTTTGATGTTTGGCCATGATGCGGTCTTGCCATTGGAAGTCAACGTCCAATCATTACGAGTTCAAGAGCAACATCATCTCATTGGAGAAGATTACGTTCGAGCTATGTGGCGGGAACATGAAGACCTTAGCGAAAAGCGCTTGGAGGCTTTAGATAGTTTGGTCATGGAAAAGCAACGAGTCGCTCGTGCCTACGACAAGAGGACGCGGGGAAGGAGTTACGGCGAAGGAGAGTTGGTTTGGAAAGCGGTTCTCCCGCTTGGCGAAAAATTAGATGGTCGCGGCAAATGGACTCCAAGATGGGAAGGCCCATACATCATCTATAAAATCTTAGGGAAAGGAGCTTTTCATCTCAAGGACTTGGATGGAGATGTCCACCATAACCCTATCAATGGCGGATACTTGAAGAAATACTTTCCCAATGTCCGGGACTCGGAGGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

224

Amino Acids

26.06

Weight (kDa)

9.19

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 148, 215, 436, 510
AcoI YGGCCR 1 cut(s) 241
AfeI AGCGCT 1 cut(s) 368
AfiI CCNNNNNNNGG 4 cut(s) 250, 620, 654, 661
AgsI TTSAA 3 cut(s) 124, 293, 634
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 3 cut(s) 140, 332, 572
AluI AGCT 3 cut(s) 140, 332, 572
Alw26I GTCTC 2 cut(s) 155, 167
Aor51HI AGCGCT 1 cut(s) 368
AoxI GGCC 4 cut(s) 93, 183, 241, 535
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 3 cut(s) 59, 183, 536
AsuC2I CCSGG 1 cut(s) 656
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 243
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 357
BccI CCATC 3 cut(s) 497, 522, 587
BceAI ACGGC 1 cut(s) 466
BciVI GTATCC 1 cut(s) 620
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 2 cut(s) 155, 167
BfoI RGCGCY 1 cut(s) 370
BfuI GTATCC 1 cut(s) 620
BisI GCNGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 512
Bme1390I CCNGG 1 cut(s) 656
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 3 cut(s) 59, 183, 536
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 620, 654, 661
Bse118I RCCGGY 1 cut(s) 22
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 4 cut(s) 250, 620, 654, 661
Bsh1236I CGCG 4 cut(s) 148, 215, 436, 510
BshFI GGCC 4 cut(s) 95, 185, 243, 537
BsiSI CCGG 3 cut(s) 23, 57, 655
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 4 cut(s) 250, 620, 654, 661
BsmAI GTCTC 2 cut(s) 155, 167
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 4 cut(s) 95, 185, 243, 537
Bso31I GGTCTC 1 cut(s) 155
BspANI GGCC 4 cut(s) 95, 185, 243, 537
BspFNI CGCG 4 cut(s) 148, 215, 436, 510
BspTNI GGTCTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 45, 82
BstC8I GCNNGC 2 cut(s) 73, 97
BstDEI CTNAG 2 cut(s) 356, 559
BstF5I GGATG 1 cut(s) 598
BstFNI CGCG 4 cut(s) 148, 215, 436, 510
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstMAI GTCTC 2 cut(s) 155, 167
BstMWI GCNNNNNNNGC 2 cut(s) 154, 366
BstSCI CCNGG 1 cut(s) 654
BstUI CGCG 4 cut(s) 148, 215, 436, 510
BstV2I GAAGAC 1 cut(s) 357
BsuI GTATCC 1 cut(s) 620
BsuRI GGCC 4 cut(s) 95, 185, 243, 537
BtsCI GGATG 1 cut(s) 598
Cac8I GCNNGC 2 cut(s) 73, 97
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 59, 183, 536
CseI GACGC 1 cut(s) 442
CviAII CATG 4 cut(s) 158, 245, 347, 394
CviJI RGCY 8 cut(s) 95, 140, 185, 243, 332, 377, 537, 572
CviKI_1 RGCY 8 cut(s) 95, 140, 185, 243, 332, 377, 537, 572
DdeI CTNAG 2 cut(s) 356, 559
EaeI YGGCCR 1 cut(s) 241
EciI GGCGGA 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 59
Eco47III AGCGCT 1 cut(s) 368
FaeI CATG 4 cut(s) 161, 248, 350, 397
FalI AAGNNNNNCTT 2 cut(s) 626, 658
FaqI GGGAC 1 cut(s) 671
FatI CATG 4 cut(s) 157, 244, 346, 393
FauI CCCGC 3 cut(s) 333, 429, 492
Fnu4HI GCNGC 1 cut(s) 511
FokI GGATG 1 cut(s) 605
Fsp4HI GCNGC 1 cut(s) 511
GlaI GCGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 511
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 4 cut(s) 95, 185, 243, 537
HapII CCGG 3 cut(s) 23, 57, 655
HgaI GACGC 1 cut(s) 442
HhaI GCGC 1 cut(s) 369
Hin1II CATG 4 cut(s) 161, 248, 350, 397
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 5 cut(s) 175, 408, 520, 659, 668
HpaII CCGG 3 cut(s) 23, 57, 655
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 271, 604
Hpy188I TCNGA 1 cut(s) 664
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 2 cut(s) 271, 604
HpyAV CCTTC 3 cut(s) 435, 449, 527
HpyCH4III ACNGT 2 cut(s) 45, 82
HpyCH4IV ACGT 2 cut(s) 273, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 366
HpyF3I CTNAG 2 cut(s) 356, 559
HpySE526I ACGT 2 cut(s) 273, 324
Hsp92II CATG 4 cut(s) 161, 248, 350, 397
HspAI GCGC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 569
LpnPI CCDG 4 cut(s) 36, 70, 109, 668
LweI GCATC 1 cut(s) 238
MaeII ACGT 2 cut(s) 273, 324
MaeIII GTNAC 1 cut(s) 446
MboII GAAGA 4 cut(s) 136, 329, 362, 646
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 1 cut(s) 497
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 4 cut(s) 169, 417, 514, 653
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 4 cut(s) 85, 367, 423, 658
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 3 cut(s) 23, 57, 655
MspR9I CCNGG 1 cut(s) 656
MvnI CGCG 4 cut(s) 148, 215, 436, 510
MwoI GCNNNNNNNGC 2 cut(s) 154, 366
NciI CCSGG 1 cut(s) 656
NlaIII CATG 4 cut(s) 161, 248, 350, 397
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PfoI TCCNGGA 1 cut(s) 654
PkrI GCNGC 1 cut(s) 512
PleI GAGTC 4 cut(s) 169, 416, 514, 653
PpsI GAGTC 4 cut(s) 169, 416, 514, 653
PspPI GGNCC 3 cut(s) 59, 183, 536
SatI GCNGC 1 cut(s) 511
Sau96I GGNCC 3 cut(s) 59, 183, 536
SchI GAGTC 4 cut(s) 169, 417, 514, 653
ScrFI CCNGG 1 cut(s) 656
SetI ASST 7 cut(s) 142, 226, 276, 327, 334, 357, 574
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 1 cut(s) 497
StyD4I CCNGG 1 cut(s) 654
TaaI ACNGT 2 cut(s) 45, 82
TaiI ACGT 2 cut(s) 276, 327
TaqI TCGA 1 cut(s) 328
TasI AATT 1 cut(s) 497
TauI GCSGC 1 cut(s) 513
TspDTI ATGAA 2 cut(s) 363, 566
VpaK11BI GGWCC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.