Rw5G047340

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000160
Physical Location & Seq
Forward (+)
81931660 .. 81932456
797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G047340.1

Sequence Viewer

Length: 684 bp
ATGGAGAAGCTGTGTCTGACTTTGTACTTCTCAGCATGCAAGCTGCGGCACTACATGTTATCCTTTACTACCTGCATCATCTCTCAAACTGACTTCGTCAAAAACATGCTGTCGCGGCCTATTTTGAGAGGCTGCATTGGCAAGTGGGTATTGGCCTTTTCAGAGTTTTCGTTACAGTATGTACCTCAAAAAGCTGTAAAGAGGCAGGCCATCGCGGATTTTCTGGCACATCATCCTATGTTGGTGATACCCGCGCTAAAGGAGTTAGAGATAGCGACCGCCACGAAAATTGGACCAGAGCTGGCGCGCATCCCAGACGATCGTTTTTCTTATTCCTTCCAACTGGAGTTTAAGTGTACAAACAACCAGGCAGAATACGAGGCTCTTATTATCGGGCTTGAAGTTTTATTGGAACTAGGAGTGAGGGATGTTCAGGTCCGCGGCGACTCTCAGCATGTGATAAATCAGCTTCAAGAAAAGTACAAATGTGTCAGCTGGTTGCTCATACCGTATTTGAATCGCGCCATTGAGCTTCTGGATCAATTTGTTGACGCCGATTTGGAATACATTCCTCGCGAGTGCAATTTCGCGGCCAATGAGCTCGCTCAACTGGCCACAGGCATTACATTGAAGTATGGGGTTCGCGAGCGTAATTTGAAAGTCGAGCGTCGTACATTACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

227

Amino Acids

26.12

Weight (kDa)

7.57

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 114 - 204 2.4e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AccII CGCG 9 cut(s) 115, 215, 254, 307, 441, 522, 576, 590, 645
AciI CCGC 8 cut(s) 46, 115, 215, 252, 279, 439, 441, 590
AclWI GGATC 1 cut(s) 546
AcoI YGGCCR 2 cut(s) 591, 612
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 5 cut(s) 26, 183, 358, 482, 673
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 5 cut(s) 401, 473, 517, 631, 658
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 8 cut(s) 10, 43, 194, 301, 469, 495, 532, 601
AluI AGCT 8 cut(s) 10, 43, 194, 301, 469, 495, 532, 601
Alw21I GWGCWC 1 cut(s) 603
AlwI GGATC 1 cut(s) 546
AoxI GGCC 5 cut(s) 116, 153, 207, 591, 612
ApeKI GCWGC 2 cut(s) 43, 132
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 4 cut(s) 256, 307, 309, 524
AspS9I GGNCC 2 cut(s) 293, 436
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 2 cut(s) 293, 436
BalI TGGCCA 1 cut(s) 614
BanII GRGCYC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 30, 119
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 368
BfaI CTAG 1 cut(s) 416
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 6 cut(s) 44, 47, 116, 133, 442, 591
BlsI GCNGC 6 cut(s) 45, 48, 117, 134, 443, 592
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 2 cut(s) 293, 436
BmgT120I GGNCC 2 cut(s) 293, 436
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 84, 318
BpmI CTGGAG 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 439
BsaXI ACNNNNNCTCC 3 cut(s) 26, 338, 368
Bse1I ACTGG 2 cut(s) 348, 615
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 3 cut(s) 232, 309, 433
BseMII CTCAG 2 cut(s) 45, 464
BseNI ACTGG 2 cut(s) 348, 615
BsePI GCGCGC 1 cut(s) 305
BseXI GCAGC 2 cut(s) 30, 119
Bsh1236I CGCG 9 cut(s) 115, 215, 254, 307, 441, 522, 576, 590, 645
Bsh1285I CGRYCG 2 cut(s) 279, 322
BshFI GGCC 5 cut(s) 118, 155, 209, 593, 614
BsiEI CGRYCG 2 cut(s) 279, 322
BsiHKAI GWGCWC 1 cut(s) 603
BsnI GGCC 5 cut(s) 118, 155, 209, 593, 614
Bsp1286I GDGCHC 1 cut(s) 603
Bsp1407I TGTACA 1 cut(s) 356
Bsp143I GATC 2 cut(s) 319, 538
Bsp68I TCGCGA 2 cut(s) 576, 645
BspACI CCGC 8 cut(s) 46, 115, 215, 252, 279, 439, 441, 590
BspANI GGCC 5 cut(s) 118, 155, 209, 593, 614
BspCNI CTCAG 2 cut(s) 44, 463
BspFNI CGCG 9 cut(s) 115, 215, 254, 307, 441, 522, 576, 590, 645
BspMI ACCTGC 1 cut(s) 80
BspPI GGATC 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 356
BsrI ACTGG 2 cut(s) 348, 615
BssECI CCNNGG 1 cut(s) 439
BssHII GCGCGC 1 cut(s) 305
BssMI GATC 2 cut(s) 319, 538
BssNI GRCGYC 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 177, 510
BstACI GRCGYC 1 cut(s) 552
BstAUI TGTACA 1 cut(s) 356
BstC8I GCNNGC 7 cut(s) 37, 41, 207, 303, 307, 603, 647
BstDEI CTNAG 2 cut(s) 31, 450
BstDSI CCRYGG 1 cut(s) 439
BstF5I GGATG 3 cut(s) 232, 309, 433
BstFNI CGCG 9 cut(s) 115, 215, 254, 307, 441, 522, 576, 590, 645
BstHHI GCGC 4 cut(s) 256, 307, 309, 524
BstKTI GATC 2 cut(s) 322, 541
BstMBI GATC 2 cut(s) 319, 538
BstMCI CGRYCG 2 cut(s) 279, 322
BstMWI GCNNNNNNNGC 3 cut(s) 115, 138, 611
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 4 cut(s) 39, 58, 109, 458
BstSCI CCNGG 1 cut(s) 366
BstUI CGCG 9 cut(s) 115, 215, 254, 307, 441, 522, 576, 590, 645
BstV1I GCAGC 2 cut(s) 30, 119
BsuRI GGCC 5 cut(s) 118, 155, 209, 593, 614
BtgI CCRYGG 1 cut(s) 439
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 3 cut(s) 232, 309, 433
BtuMI TCGCGA 2 cut(s) 576, 645
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 7 cut(s) 37, 41, 207, 303, 307, 603, 647
CfoI GCGC 4 cut(s) 256, 307, 309, 524
Cfr13I GGNCC 2 cut(s) 293, 436
Cfr42I CCGCGG 1 cut(s) 442
CseI GACGC 2 cut(s) 560, 656
Csp6I GTAC 5 cut(s) 25, 182, 357, 481, 672
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 4 cut(s) 36, 55, 106, 455
CviQI GTAC 5 cut(s) 25, 182, 357, 481, 672
DdeI CTNAG 2 cut(s) 31, 450
DpnI GATC 2 cut(s) 321, 540
DpnII GATC 2 cut(s) 319, 538
EaeI YGGCCR 2 cut(s) 591, 612
Ecl136II GAGCTC 1 cut(s) 601
Eco24I GRGCYC 1 cut(s) 603
Eco47I GGWCC 2 cut(s) 293, 436
Eco53kI GAGCTC 1 cut(s) 601
EcoICRI GAGCTC 1 cut(s) 601
EcoRII CCWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 603
FaeI CATG 4 cut(s) 39, 58, 109, 458
FaiI YATR 8 cut(s) 37, 56, 107, 180, 239, 456, 506, 636
FatI CATG 4 cut(s) 35, 54, 105, 454
FauI CCCGC 1 cut(s) 259
Fnu4HI GCNGC 6 cut(s) 44, 47, 116, 133, 442, 591
FokI GGATG 3 cut(s) 219, 296, 440
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 6 cut(s) 44, 47, 116, 133, 442, 591
FspBI CTAG 1 cut(s) 416
GlaI GCGC 4 cut(s) 255, 306, 308, 523
GluI GCNGC 6 cut(s) 44, 47, 116, 133, 442, 591
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 5 cut(s) 118, 155, 209, 593, 614
HgaI GACGC 2 cut(s) 560, 656
HhaI GCGC 4 cut(s) 256, 307, 309, 524
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 4 cut(s) 39, 58, 109, 458
Hin6I GCGC 4 cut(s) 254, 305, 307, 522
HinP1I GCGC 4 cut(s) 254, 305, 307, 522
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 2 cut(s) 446, 517
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 2 cut(s) 357, 550
Hpy188I TCNGA 2 cut(s) 18, 163
Hpy188III TCNNGA 4 cut(s) 473, 536, 575, 644
Hpy8I GTNNAC 2 cut(s) 357, 550
Hpy99I CGWCG 1 cut(s) 672
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 2 cut(s) 177, 510
HpyCH4V TGCA 4 cut(s) 39, 75, 135, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 138, 611
HpyF3I CTNAG 2 cut(s) 31, 450
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 4 cut(s) 39, 58, 109, 458
HspAI GCGC 4 cut(s) 254, 305, 307, 522
KspI CCGCGG 1 cut(s) 442
Kzo9I GATC 2 cut(s) 319, 538
Lsp1109I GCAGC 2 cut(s) 30, 119
LweI GCATC 2 cut(s) 84, 318
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 171
MalI GATC 2 cut(s) 321, 540
MboI GATC 2 cut(s) 319, 538
MhlI GDGCHC 1 cut(s) 603
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 4 cut(s) 288, 542, 583, 652
MluNI TGGCCA 1 cut(s) 614
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 6 cut(s) 122, 195, 195, 373, 417, 582
Mox20I TGGCCA 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 567
MscI TGGCCA 1 cut(s) 614
MseI TTAA 2 cut(s) 351, 682
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 2 cut(s) 441, 495
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MvnI CGCG 9 cut(s) 115, 215, 254, 307, 441, 522, 576, 590, 645
MwoI GCNNNNNNNGC 3 cut(s) 115, 138, 611
NdeII GATC 2 cut(s) 319, 538
NlaIII CATG 4 cut(s) 39, 58, 109, 458
NruI TCGCGA 2 cut(s) 576, 645
NspI RCATGY 4 cut(s) 39, 58, 109, 458
PaeI GCATGC 1 cut(s) 39
PauI GCGCGC 1 cut(s) 305
PciI ACATGT 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 517
PflFI GACNNNGTC 1 cut(s) 95
PkrI GCNGC 6 cut(s) 45, 48, 117, 134, 443, 592
Ple19I CGATCG 1 cut(s) 322
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PscI ACATGT 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 2 cut(s) 293, 436
PsyI GACNNNGTC 1 cut(s) 95
PteI GCGCGC 1 cut(s) 305
PvuI CGATCG 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 495
RruI TCGCGA 2 cut(s) 576, 645
RsaI GTAC 5 cut(s) 26, 183, 358, 482, 673
RsaNI GTAC 5 cut(s) 25, 182, 357, 481, 672
SacI GAGCTC 1 cut(s) 603
SacII CCGCGG 1 cut(s) 442
SaqAI TTAA 2 cut(s) 351, 682
SatI GCNGC 6 cut(s) 44, 47, 116, 133, 442, 591
Sau3AI GATC 2 cut(s) 319, 538
Sau96I GGNCC 2 cut(s) 293, 436
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 2 cut(s) 84, 318
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SinI GGWCC 2 cut(s) 293, 436
SphI GCATGC 1 cut(s) 39
Sse9I AATT 4 cut(s) 288, 542, 583, 652
SsiI CCGC 8 cut(s) 46, 115, 215, 252, 279, 439, 441, 590
SspMI CTAG 1 cut(s) 416
SstI GAGCTC 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 177, 510
TaqI TCGA 1 cut(s) 663
TasI AATT 4 cut(s) 288, 542, 583, 652
TatI WGTACW 3 cut(s) 24, 356, 480
TauI GCSGC 4 cut(s) 49, 118, 444, 593
TfiI GAWTC 1 cut(s) 517
Tru1I TTAA 2 cut(s) 351, 682
Tru9I TTAA 2 cut(s) 351, 682
TseI GCWGC 2 cut(s) 43, 132
Tth111I GACNNNGTC 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 293, 436
XceI RCATGY 4 cut(s) 39, 58, 109, 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.