Rw6G019480

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000160
Physical Location & Seq
Reverse (-)
38867653 .. 38871128
3476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019480.1

Sequence Viewer

Length: 2634 bp
ATGAGGAAACTGTTGGCTCATTGGGCCGAAAACTCTCTTCAGAATGATTCGGCCATGAATTTGCTGGAATTTATCACAGAAGGAGCACCAGAGGATGAACTAAAGCTAGAAGACATCGGCCCTGCACCGGCCGAGTTGGAAGACGACCTTACTGAAACTCAAGACCCACTAGAAGACTTGAATTTAGGGACCACCGAGGAGCCTCGGATAGTTAGGATCAGCAAGCTCCTACCACCCAAGTTGAAGGAAGACTTGAAGGCTCTGCTGACTGAGTTTCAAGATTGTTTTGCATGGAGTTACCATGAAATGCCTGGTTTAGATAGAAGTATAGTAGAACATAGGTTGCCTATACAATCCAATTGTAAGCCTTACAAGCAACCTCCTCGGCGATGTGCCGCCGAGGTTTTGCCTGAAATTAAAGAAGAAATGGAACGTTTATTAAAGGCCGGTTTTATTCGAACGGCCAGGTATGTTGAATGGTTATCTAATATTGTGCCAGTAAGGAAAAAGAATGGCAAAATGCGCATATGTGTTGATTTTAGAAATCTAAACTTGGCCACACCCAAAGATGAGTACCCAATGCCCGTGGCCGACCTGCTCGTGGATGGTGCGGCCAAACATGAAATTCTTTCTTTCATGGACGGGCACGCTGGCTACAACCAAATTTTTATAGCTGAGGAGGATGTTCACAAAACGGCGTTTAGATGCCCAGGCGCAATAGGAACATTTGAAGCCATGAATATGATCTTTCACGACTTAATTGGTCACACAGTCGAAGTATACATTGATGACATTGTGGTAAAGTCGGCCAAGACAAAAAATCATTTGGCCGACCTTCGACAGACATTTGTACGAATGCGAGCTCACAAACTAAAAATGAATCCTGACAAATGTCTTTTTGGAGTATCAACCGGTATGTTCCTTGGTTTTGTAGTTCATAAAAAGGGAATTGAAATTGACAAAAATAAAGCCAAGGCAATTATGGATGCACCTGCTCCTAGCACGAAGAAGGAACTCCAATCATTCCTGGGAAAAGTAAATTTTTTAAGGCGCTTCATCTCTAACTCGGCTGGCAAGATTCAGCCATTCTCTTCACTTTTGAGAACCAAGGCCGACGATGAATTTGTGTGGAGCACAGAACACCAAGCGGCATTCGACCAACTCAAACGATACTTATCAAACCCTCCCGTCTTGGTACCCCCAGTACGTGGGAGACCTTTGAAGTTATACATATCAGCATCGGATAACTCAATAGGAAGCCTACTAGCACAAGATAACGACAATGGCAAGGAATGTGCTGTTCATTACTTGAGCCGGATCCTCACCGATGTGGAAACTCGGTACACGCCTATTGAGAGGCTTTGTCTTGCATTGTTCTTTTCAGCCATCAGGCTTCGGCACTACATGTTACCCTCGGTCGTCCAAGTCATATCCAAGACCGATTTAGTAAAGTACATGCTGACTCGGCCCATCATACGAGGCCGAATTGGAAAATGGACCATGGCGTTGTCTGAGTTTACGTTTCAATATGTGTCTCAAAAGTCCGTCAAGGGCCAAGCATTGGCCGATTTTCTTGCTCATCACCCTTCGACCGAATTTGAGGGAGCCGAGGAGGTTGATATTGGGATCATATATGTGGCTTCCATGACCAATAACCACTGGACCATGTATTTTGATGGGTCTAGTACTGAATTTTCCGCTGGAGCTGGTATTATTATTGAAACGCCTGAAGGACAAAAGTTCCAGTTTGCTTTCCAATTAGATTTTACATGCACAAACAATCAGGCAGAATATGAGGCTCTTATTATTGGTTTGGAGATTCTCCAAGAGATGGGAGCACGGCGAGTTCTGGTGTTCGGGGATTCTCAACTGGTCATTAACCAAATGAATAAGGAGTTCAAATGCACAAGCTGGGGACTTTTATCATATCACGCTTTAGCCGACCAGCTCGCCAACACGTTCGATCGAATCTCTTTCGCCCACCTCCCACGGGGACAGAACATGGAGGCCAATGAAATGGCCCAATTAGCCTCGGGGTTACGGATCCCCGAAGGAGATGACTCCCGAGTCATCAAGATTGCCAAACGTACCCTCCCAACTTTGGAAGAGAGAGGAGTCTCAGAAGATGTTTTTGTTATCGACGTCGAGCCAAATGATTGGAGACTCCCCATTATCAAGTTCCACAAAAATCCTCAAGGCAATCATGATCGGAAGACTCGGTACTTGGCTGGACATTTCGTTATATACAAAGACGCAGTGTACCGCAAAAGCTCCGATGATCTACTCCTTCTTTGTATAGGGGGGCAAGAGACTTTGGAAGTCATGAGAGATGTCCATGAGGGGATTTCACAGAAAAAGGCTGTGGCTCGTGCATACAACAAGCGAGTTAAGTCTAAGTCATTTGCCGAGGAAGATTTAGTTTGGAAAGCCGTTTTGCCTATCGGAACTAAAGATAGACGTTTCGGAAAATGGTCGCCAAGGTGGGAAGGCCCGTTTATCATCGATCAAGTGTTAGGAAAAGGTGCATATCAACTTAGGGATCAAGATGGAGAGCTGCATGCAATGCCTATCAACGGGCAATTTCTTAAGAAATATTACCCCACGACATGGGAGATGAGGGAGCAAGAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

877

Amino Acids

99.8

Weight (kDa)

6.5

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 245 - 311 1.8e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 377 - 472 2.2e-22 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 405 - 506 4.6e-18 RNase H-like domain found in reverse transcriptase
RNase_H PF00075 552 - 642 6.7e-07 RNase H
RVT_3 PF13456 558 - 676 1.6e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1000
AasI GACNNNNNNGTC 1 cut(s) 2066
AatII GACGTC 1 cut(s) 2145
Acc16I TGCGCA 1 cut(s) 524
Acc36I ACCTGC 2 cut(s) 603, 1000
Acc65I GGTACC 1 cut(s) 1195
AccB1I GGYRCC 1 cut(s) 1195
AccB7I CCANNNNNTGG 4 cut(s) 1208, 1561, 1831, 2607
AccI GTMKAC 1 cut(s) 780
AciI CCGC 5 cut(s) 396, 611, 1148, 1698, 2263
AclI AACGTT 1 cut(s) 433
AclWI GGATC 7 cut(s) 224, 1312, 1325, 1634, 2038, 2051, 2547
AcoI YGGCCR 9 cut(s) 51, 129, 462, 555, 588, 612, 807, 828, 1563
AcsI RAATTY 9 cut(s) 58, 68, 181, 624, 663, 1039, 1121, 1595, 1691
AcuI CTGAAG 2 cut(s) 23, 1749
AcyI GRCGYC 1 cut(s) 2142
AfiI CCNNNNNNNGG 9 cut(s) 127, 601, 1208, 1561, 1831, 1990, 2101, 2573, 2607
AflII CTTAAG 1 cut(s) 2585
AflIII ACRYGT 2 cut(s) 1404, 1956
AgeI ACCGGT 1 cut(s) 911
AjnI CCWGG 4 cut(s) 310, 464, 709, 1026
AleI CACNNNNGTG 1 cut(s) 1328
AluBI AGCT 9 cut(s) 106, 226, 674, 863, 1706, 1911, 1948, 2271, 2554
AluI AGCT 9 cut(s) 106, 226, 674, 863, 1706, 1911, 1948, 2271, 2554
Alw21I GWGCWC 4 cut(s) 88, 865, 1136, 1840
Alw26I GTCTC 5 cut(s) 1207, 1539, 2122, 2155, 2303
AlwI GGATC 7 cut(s) 224, 1312, 1325, 1634, 2038, 2051, 2547
Ama87I CYCGRG 2 cut(s) 2032, 2064
ApeKI GCWGC 1 cut(s) 2554
ApoI RAATTY 9 cut(s) 58, 68, 181, 624, 663, 1039, 1121, 1595, 1691
ArsI GACNNNNNNTTYG 2 cut(s) 1106, 1138
AsiGI ACCGGT 1 cut(s) 911
Asp718I GGTACC 1 cut(s) 1195
AspLEI GCGC 3 cut(s) 525, 716, 1053
AspS9I GGNCC 9 cut(s) 24, 119, 189, 1467, 1497, 1552, 1662, 2020, 2489
AsuHPI GGTGA 2 cut(s) 1315, 1574
AsuII TTCGAA 1 cut(s) 457
AvaI CYCGRG 2 cut(s) 2032, 2064
AvaII GGWCC 3 cut(s) 189, 1497, 1662
BaeGI GKGCMC 1 cut(s) 648
BalI TGGCCA 1 cut(s) 557
BamHI GGATCC 2 cut(s) 1317, 2043
BanI GGYRCC 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 865
BarI GAAGNNNNNNTAC 2 cut(s) 2204, 2236
BauI CACGAG 2 cut(s) 599, 2367
BbsI GAAGAC 5 cut(s) 117, 147, 180, 255, 2219
Bbv12I GWGCWC 4 cut(s) 88, 865, 1136, 1840
BbvCI CCTCAGC 1 cut(s) 675
BbvI GCAGC 1 cut(s) 2541
BccI CCATC 6 cut(s) 599, 1394, 1478, 1670, 1825, 2540
BceAI ACGGC 4 cut(s) 477, 711, 1856, 2414
BcgI CGANNNNNNTGC 4 cut(s) 365, 399, 1556, 1590
BciT130I CCWGG 4 cut(s) 312, 466, 711, 1028
BcoDI GTCTC 5 cut(s) 1207, 1539, 2122, 2155, 2303
BfaI CTAG 5 cut(s) 107, 170, 999, 1265, 1683
BfoI RGCGCY 1 cut(s) 1054
BfrI CTTAAG 1 cut(s) 2585
BfuAI ACCTGC 2 cut(s) 603, 1000
BisI GCNGC 4 cut(s) 396, 612, 1149, 2555
BlsI GCNGC 4 cut(s) 397, 613, 1150, 2556
BmcAI AGTACT 1 cut(s) 1687
Bme1390I CCNGG 4 cut(s) 312, 466, 711, 1028
Bme18I GGWCC 3 cut(s) 189, 1497, 1662
BmeT110I CYCGRG 2 cut(s) 2032, 2064
BmgT120I GGNCC 9 cut(s) 24, 119, 189, 1467, 1497, 1552, 1662, 2020, 2489
BmiI GGNNCC 6 cut(s) 190, 201, 1197, 1319, 1606, 2045
BmrFI CCNGG 4 cut(s) 312, 466, 711, 1028
BmrI ACTGGG 1 cut(s) 1196
BmsI GCATC 3 cut(s) 695, 976, 1247
BmuI ACTGGG 1 cut(s) 1196
BoxI GACNNNNGTC 1 cut(s) 891
BpiI GAAGAC 5 cut(s) 117, 147, 180, 255, 2219
BpmI CTGGAG 1 cut(s) 1722
Bpu10I CCTNAGC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 457
BpuEI CTTGAG 3 cut(s) 144, 1330, 2178
Bsa29I ATCGAT 1 cut(s) 2502
BsaAI YACGTR 1 cut(s) 1208
BsaBI GATNNNNATC 1 cut(s) 1174
BsaHI GRCGYC 1 cut(s) 2142
BsaI GGTCTC 1 cut(s) 1207
BsaWI WCCGGW 1 cut(s) 911
BsaXI ACNNNNNCTCC 2 cut(s) 2076, 2106
Bsc4I CCNNNNNNNGG 9 cut(s) 127, 601, 1208, 1561, 1831, 1990, 2101, 2573, 2607
Bse118I RCCGGY 3 cut(s) 127, 446, 911
Bse1I ACTGG 5 cut(s) 497, 1202, 1664, 1744, 1875
Bse3DI GCAATG 1 cut(s) 2568
Bse8I GATNNNNATC 1 cut(s) 1174
BseBI CCWGG 4 cut(s) 312, 466, 711, 1028
BseCI ATCGAT 1 cut(s) 2502
BseGI GGATG 4 cut(s) 100, 610, 688, 991
BseJI GATNNNNATC 1 cut(s) 1174
BseLI CCNNNNNNNGG 9 cut(s) 127, 601, 1208, 1561, 1831, 1990, 2101, 2573, 2607
BseMI GCAATG 1 cut(s) 2568
BseMII CTCAG 4 cut(s) 261, 666, 1503, 2133
BseNI ACTGG 5 cut(s) 497, 1202, 1664, 1744, 1875
BseRI GAGGAG 5 cut(s) 212, 372, 692, 1625, 2127
BseSI GKGCMC 1 cut(s) 648
BseX3I CGGCCG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 2541
BseYI CCCAGC 1 cut(s) 1911
BsgI GTGCAG 1 cut(s) 108
Bsh1285I CGRYCG 4 cut(s) 132, 1419, 1593, 1966
BshNI GGYRCC 1 cut(s) 1195
BshTI ACCGGT 1 cut(s) 911
BshVI ATCGAT 1 cut(s) 2502
BsiEI CGRYCG 4 cut(s) 132, 1419, 1593, 1966
BsiHKAI GWGCWC 4 cut(s) 88, 865, 1136, 1840
BsiHKCI CYCGRG 2 cut(s) 2032, 2064
BsiSI CCGG 4 cut(s) 128, 447, 912, 1315
BslFI GGGAC 3 cut(s) 202, 1929, 2007
BslI CCNNNNNNNGG 9 cut(s) 127, 601, 1208, 1561, 1831, 1990, 2101, 2573, 2607
BsmAI GTCTC 5 cut(s) 1207, 1539, 2122, 2155, 2303
BsmFI GGGAC 3 cut(s) 202, 1929, 2007
BsmI GAATGC 2 cut(s) 861, 1151
Bso31I GGTCTC 1 cut(s) 1207
BsoBI CYCGRG 2 cut(s) 2032, 2064
Bsp119I TTCGAA 1 cut(s) 457
Bsp1286I GDGCHC 5 cut(s) 88, 648, 865, 1136, 1840
Bsp19I CCATGG 1 cut(s) 1500
BspACI CCGC 5 cut(s) 396, 611, 1148, 1698, 2263
BspCNI CTCAG 4 cut(s) 262, 667, 1504, 2132
BspDI ATCGAT 1 cut(s) 2502
BspHI TCATGA 2 cut(s) 2203, 2322
BspLI GGNNCC 6 cut(s) 190, 201, 1197, 1319, 1606, 2045
BspMI ACCTGC 2 cut(s) 603, 1000
BspPI GGATC 7 cut(s) 224, 1312, 1325, 1634, 2038, 2051, 2547
BspT104I TTCGAA 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 1195
BspTI CTTAAG 1 cut(s) 2585
BspTNI GGTCTC 1 cut(s) 1207
BsrDI GCAATG 1 cut(s) 2568
BsrFI RCCGGY 3 cut(s) 127, 446, 911
BsrI ACTGG 5 cut(s) 497, 1202, 1664, 1744, 1875
BssAI RCCGGY 3 cut(s) 127, 446, 911
BssNAI GTATAC 1 cut(s) 781
BssNI GRCGYC 1 cut(s) 2142
BssSI CACGAG 2 cut(s) 599, 2367
BssT1I CCWWGG 5 cut(s) 922, 972, 1107, 1500, 2477
Bst1107I GTATAC 1 cut(s) 781
Bst2BI CACGAG 2 cut(s) 599, 2367
Bst2UI CCWGG 4 cut(s) 312, 466, 711, 1028
Bst4CI ACNGT 2 cut(s) 12, 772
Bst6I CTCTTC 3 cut(s) 42, 1096, 2100
BstACI GRCGYC 1 cut(s) 2142
BstAFI CTTAAG 1 cut(s) 2585
BstAPI GCANNNNNTGC 1 cut(s) 2563
BstBAI YACGTR 1 cut(s) 1208
BstBI TTCGAA 1 cut(s) 457
BstC8I GCNNGC 7 cut(s) 224, 648, 652, 861, 1072, 1950, 2559
BstDEI CTNAG 6 cut(s) 270, 675, 1512, 2119, 2394, 2534
BstDSI CCRYGG 3 cut(s) 585, 1500, 1988
BstF5I GGATG 4 cut(s) 100, 610, 688, 991
BstH2I RGCGCY 1 cut(s) 1054
BstHHI GCGC 3 cut(s) 525, 716, 1053
BstMAI GTCTC 5 cut(s) 1207, 1539, 2122, 2155, 2303
BstMCI CGRYCG 4 cut(s) 132, 1419, 1593, 1966
BstMWI GCNNNNNNNGC 6 cut(s) 23, 373, 522, 1465, 2027, 2563
BstNI CCWGG 4 cut(s) 312, 466, 711, 1028
BstNSI RCATGY 4 cut(s) 1408, 1459, 1773, 2561
BstPAI GACNNNNGTC 1 cut(s) 891
BstSCI CCNGG 4 cut(s) 310, 464, 709, 1026
BstSLI GKGCMC 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 2541
BstV2I GAAGAC 5 cut(s) 117, 147, 180, 255, 2219
BstX2I RGATCY 2 cut(s) 1317, 2043
BstXI CCANNNNNNTGG 2 cut(s) 2017, 2157
BstYI RGATCY 2 cut(s) 1317, 2043
BstZ17I GTATAC 1 cut(s) 781
BstZI CGGCCG 1 cut(s) 129
Bsu15I ATCGAT 1 cut(s) 2502
BsuTUI ATCGAT 1 cut(s) 2502
BtgI CCRYGG 3 cut(s) 585, 1500, 1988
BtgZI GCGATG 1 cut(s) 403
BtsCI GGATG 4 cut(s) 100, 610, 688, 991
BtsI GCAGTG 1 cut(s) 2262
BtsIMutI CAGTG 2 cut(s) 1657, 2262
BveI ACCTGC 2 cut(s) 603, 1000
Cac8I GCNNGC 7 cut(s) 224, 648, 652, 861, 1072, 1950, 2559
CciI TCATGA 2 cut(s) 2203, 2322
CfoI GCGC 3 cut(s) 525, 716, 1053
Cfr10I RCCGGY 3 cut(s) 127, 446, 911
Cfr13I GGNCC 9 cut(s) 24, 119, 189, 1467, 1497, 1552, 1662, 2020, 2489
ClaI ATCGAT 1 cut(s) 2502
CseI GACGC 1 cut(s) 2261
CspAI ACCGGT 1 cut(s) 911
CspCI CAANNNNNGTGG 4 cut(s) 222, 257, 567, 602
DdeI CTNAG 6 cut(s) 270, 675, 1512, 2119, 2394, 2534
DrdI GACNNNNNNGTC 1 cut(s) 2066
DseDI GACNNNNNNGTC 1 cut(s) 2066
EaeI YGGCCR 9 cut(s) 51, 129, 462, 555, 588, 612, 807, 828, 1563
EagI CGGCCG 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 42, 1096, 2100
EarI CTCTTC 3 cut(s) 42, 1096, 2100
Ecl136II GAGCTC 1 cut(s) 863
EclXI CGGCCG 1 cut(s) 129
Eco130I CCWWGG 5 cut(s) 922, 972, 1107, 1500, 2477
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 1207
Eco47I GGWCC 3 cut(s) 189, 1497, 1662
Eco52I CGGCCG 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 863
Eco57I CTGAAG 2 cut(s) 23, 1749
Eco88I CYCGRG 2 cut(s) 2032, 2064
EcoICRI GAGCTC 1 cut(s) 863
EcoRII CCWGG 4 cut(s) 310, 464, 709, 1026
EcoT14I CCWWGG 5 cut(s) 922, 972, 1107, 1500, 2477
EcoT38I GRGCYC 1 cut(s) 865
ErhI CCWWGG 5 cut(s) 922, 972, 1107, 1500, 2477
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 236, 268
FaqI GGGAC 3 cut(s) 202, 1929, 2007
FauNDI CATATG 1 cut(s) 527
FblI GTMKAC 1 cut(s) 780
Fnu4HI GCNGC 4 cut(s) 396, 612, 1149, 2555
FokI GGATG 4 cut(s) 107, 617, 695, 998
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 4 cut(s) 396, 612, 1149, 2555
FspAI RTGCGCAY 1 cut(s) 524
FspBI CTAG 5 cut(s) 107, 170, 999, 1265, 1683
FspI TGCGCA 1 cut(s) 524
GlaI GCGC 3 cut(s) 524, 715, 1052
GluI GCNGC 4 cut(s) 396, 612, 1149, 2555
GsaI CCCAGC 1 cut(s) 1915
GsuI CTGGAG 1 cut(s) 1722
HaeII RGCGCY 1 cut(s) 1054
HapII CCGG 4 cut(s) 128, 447, 912, 1315
HgaI GACGC 1 cut(s) 2261
HhaI GCGC 3 cut(s) 525, 716, 1053
Hin1I GRCGYC 1 cut(s) 2142
Hin6I GCGC 3 cut(s) 523, 714, 1051
HinP1I GCGC 3 cut(s) 523, 714, 1051
HpaII CCGG 4 cut(s) 128, 447, 912, 1315
HphI GGTGA 2 cut(s) 1315, 1574
Hpy166II GTNNAC 5 cut(s) 688, 781, 1344, 1518, 2260
Hpy188I TCNGA 9 cut(s) 42, 207, 1243, 1513, 2122, 2211, 2275, 2444, 2465
Hpy188III TCNNGA 9 cut(s) 161, 278, 752, 884, 2064, 2074, 2204, 2323, 2543
Hpy8I GTNNAC 5 cut(s) 688, 781, 1344, 1518, 2260
Hpy99I CGWCG 3 cut(s) 1118, 2144, 2147
HpyCH4III ACNGT 2 cut(s) 12, 772
HpyCH4IV ACGT 7 cut(s) 433, 1207, 1520, 1958, 2086, 2142, 2458
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 373, 522, 1465, 2027, 2563
HpyF3I CTNAG 6 cut(s) 270, 675, 1512, 2119, 2394, 2534
HpySE526I ACGT 7 cut(s) 433, 1207, 1520, 1958, 2086, 2142, 2458
Hsp92I GRCGYC 1 cut(s) 2142
HspAI GCGC 3 cut(s) 523, 714, 1051
KpnI GGTACC 1 cut(s) 1199
Lsp1109I GCAGC 1 cut(s) 2541
LweI GCATC 3 cut(s) 695, 976, 1247
MaeI CTAG 5 cut(s) 107, 170, 999, 1265, 1683
MaeII ACGT 7 cut(s) 433, 1207, 1520, 1958, 2086, 2142, 2458
MaeIII GTNAC 4 cut(s) 296, 764, 1407, 2037
MfeI CAATTG 1 cut(s) 358
MflI RGATCY 2 cut(s) 1317, 2043
MhlI GDGCHC 5 cut(s) 88, 648, 865, 1136, 1840
MlsI TGGCCA 1 cut(s) 557
MluNI TGGCCA 1 cut(s) 557
MlyI GAGTC 6 cut(s) 1456, 2054, 2076, 2124, 2157, 2209
MmeI TCCRAC 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 557
MscI TGGCCA 1 cut(s) 557
MseI TTAA 7 cut(s) 417, 440, 758, 1046, 1878, 2388, 2586
MslI CAYNNNNRTG 3 cut(s) 740, 1328, 1634
Msp20I TGGCCA 1 cut(s) 557
MspA1I CMGCKG 1 cut(s) 1700
MspCI CTTAAG 1 cut(s) 2585
MspI CCGG 4 cut(s) 128, 447, 912, 1315
MspR9I CCNGG 4 cut(s) 312, 466, 711, 1028
MunI CAATTG 1 cut(s) 358
Mva1269I GAATGC 2 cut(s) 861, 1151
MvaI CCWGG 4 cut(s) 312, 466, 711, 1028
MwoI GCNNNNNNNGC 6 cut(s) 23, 373, 522, 1465, 2027, 2563
NcoI CCATGG 1 cut(s) 1500
NdeI CATATG 1 cut(s) 527
NlaIV GGNNCC 6 cut(s) 190, 201, 1197, 1319, 1606, 2045
NmeAIII GCCGAG 7 cut(s) 157, 364, 424, 1046, 1444, 1633, 2431
NmuCI GTSAC 1 cut(s) 764
NsbI TGCGCA 1 cut(s) 524
NspI RCATGY 4 cut(s) 1408, 1459, 1773, 2561
NspV TTCGAA 1 cut(s) 457
OliI CACNNNNGTG 1 cut(s) 1328
PaeI GCATGC 1 cut(s) 2561
PagI TCATGA 2 cut(s) 2203, 2322
PaqCI CACCTGC 1 cut(s) 1000
PciI ACATGT 1 cut(s) 1404
PcsI WCGNNNNNNNCGW 1 cut(s) 1938
PctI GAATGC 2 cut(s) 861, 1151
PfeI GAWTC 7 cut(s) 47, 880, 1078, 1819, 1862, 1968, 2627
PflMI CCANNNNNTGG 4 cut(s) 1208, 1561, 1831, 2607
PinAI ACCGGT 1 cut(s) 911
PkrI GCNGC 4 cut(s) 397, 613, 1150, 2556
Ple19I CGATCG 1 cut(s) 1966
PleI GAGTC 6 cut(s) 1456, 2054, 2075, 2123, 2157, 2209
PpsI GAGTC 6 cut(s) 1456, 2054, 2075, 2123, 2157, 2209
Ppu21I YACGTR 1 cut(s) 1208
PscI ACATGT 1 cut(s) 1404
PshAI GACNNNNGTC 1 cut(s) 891
Psp124BI GAGCTC 1 cut(s) 865
Psp1406I AACGTT 1 cut(s) 433
Psp6I CCWGG 4 cut(s) 310, 464, 709, 1026
PspFI CCCAGC 1 cut(s) 1911
PspGI CCWGG 4 cut(s) 310, 464, 709, 1026
PspN4I GGNNCC 6 cut(s) 190, 201, 1197, 1319, 1606, 2045
PspPI GGNCC 9 cut(s) 24, 119, 189, 1467, 1497, 1552, 1662, 2020, 2489
PsuI RGATCY 2 cut(s) 1317, 2043
PvuI CGATCG 1 cut(s) 1966
RseI CAYNNNNRTG 3 cut(s) 740, 1328, 1634
SacI GAGCTC 1 cut(s) 865
SaqAI TTAA 7 cut(s) 417, 440, 758, 1046, 1878, 2388, 2586
SatI GCNGC 4 cut(s) 396, 612, 1149, 2555
Sau96I GGNCC 9 cut(s) 24, 119, 189, 1467, 1497, 1552, 1662, 2020, 2489
ScaI AGTACT 1 cut(s) 1687
SchI GAGTC 6 cut(s) 1456, 2054, 2076, 2124, 2157, 2209
ScrFI CCNGG 4 cut(s) 312, 466, 711, 1028
SduI GDGCHC 5 cut(s) 88, 648, 865, 1136, 1840
SfaNI GCATC 3 cut(s) 695, 976, 1247
SfuI TTCGAA 1 cut(s) 457
SinI GGWCC 3 cut(s) 189, 1497, 1662
SmiMI CAYNNNNRTG 3 cut(s) 740, 1328, 1634
SmlI CTYRAG 4 cut(s) 159, 1309, 2193, 2585
SmoI CTYRAG 4 cut(s) 159, 1309, 2193, 2585
SphI GCATGC 1 cut(s) 2561
SsiI CCGC 5 cut(s) 396, 611, 1148, 1698, 2263
SspI AATATT 2 cut(s) 490, 2594
SspMI CTAG 5 cut(s) 107, 170, 999, 1265, 1683
SstI GAGCTC 1 cut(s) 865
StyD4I CCNGG 4 cut(s) 310, 464, 709, 1026
StyI CCWWGG 5 cut(s) 922, 972, 1107, 1500, 2477
TaaI ACNGT 2 cut(s) 12, 772
TaiI ACGT 7 cut(s) 436, 1210, 1523, 1961, 2089, 2145, 2461
TaqII GACCGA 3 cut(s) 1405, 1454, 1607
TatI WGTACW 2 cut(s) 1452, 1685
TauI GCSGC 3 cut(s) 398, 614, 1151
TfiI GAWTC 7 cut(s) 47, 880, 1078, 1819, 1862, 1968, 2627
Tru1I TTAA 7 cut(s) 417, 440, 758, 1046, 1878, 2388, 2586
Tru9I TTAA 7 cut(s) 417, 440, 758, 1046, 1878, 2388, 2586
TscAI CASTG 2 cut(s) 1664, 2262
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 1 cut(s) 2554
Tsp45I GTSAC 1 cut(s) 764
TspGWI ACGGA 2 cut(s) 1534, 2056
TspRI CASTG 2 cut(s) 1664, 2262
Van91I CCANNNNNTGG 4 cut(s) 1208, 1561, 1831, 2607
Vha464I CTTAAG 1 cut(s) 2585
VpaK11BI GGWCC 3 cut(s) 189, 1497, 1662
XapI RAATTY 9 cut(s) 58, 68, 181, 624, 663, 1039, 1121, 1595, 1691
XceI RCATGY 4 cut(s) 1408, 1459, 1773, 2561
XcmI CCANNNNNNNNNTGG 3 cut(s) 61, 308, 979
XmiI GTMKAC 1 cut(s) 780
XspI CTAG 5 cut(s) 107, 170, 999, 1265, 1683
ZraI GACGTC 1 cut(s) 2143
ZrmI AGTACT 1 cut(s) 1687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.