pycom12g02580

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
2333866 .. 2334201
336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g02580.1

Sequence Viewer

Length: 336 bp
ATGTCTCTACCTTCATTGTTGGAACGAGAGGGTCCTGTAGATGTTTACGCTGTTAAGACATTACCAGACGATTGGAGAAGGTCAATTATGCAATACCTTGATAATCCCATGGGCAAACACGACCGCAAGACAAGGGTACATGCCACAAATTATGTAGTATATCAAAATGAGTTGTACTCAAAGGTGAAGACGGCCTATTATTATTATGCCTCGGCCCAGAATAAGCAACCCAAGCTATTGCGGAAGTACACGAAGGAATATGCAGAACCCATCAATCTGGACGAAAAACACGTTGGTTACTTCGTCGACACAACTATTTTTGGCCGAGTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

13.13

Weight (kDa)

9.1

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AciI CCGC 2 cut(s) 124, 241
AcoI YGGCCR 1 cut(s) 322
AfaI GTAC 3 cut(s) 138, 176, 248
AflIII ACRYGT 1 cut(s) 289
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 3 cut(s) 192, 213, 322
AspS9I GGNCC 2 cut(s) 32, 214
AsuHPI GGTGA 1 cut(s) 196
AvaII GGWCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 194
BccI CCATC 1 cut(s) 278
BceAI ACGGC 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 32, 214
BmiI GGNNCC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BsaJI CCNNGG 2 cut(s) 108, 210
BseDI CCNNGG 2 cut(s) 108, 210
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 194, 215, 324
BsiEI CGRYCG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 3 cut(s) 194, 215, 324
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 124, 241
BspANI GGCC 3 cut(s) 194, 215, 324
BspLI GGNNCC 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 108, 210
BssT1I CCWWGG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 194
BstXI CCANNNNNNTGG 2 cut(s) 72, 277
BsuRI GGCC 3 cut(s) 194, 215, 324
BtgI CCRYGG 1 cut(s) 108
Cfr13I GGNCC 2 cut(s) 32, 214
Csp6I GTAC 3 cut(s) 137, 175, 247
CviAII CATG 2 cut(s) 109, 140
CviJI RGCY 4 cut(s) 194, 215, 235, 324
CviKI_1 RGCY 4 cut(s) 194, 215, 235, 324
CviQI GTAC 3 cut(s) 137, 175, 247
EaeI YGGCCR 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 108
Eco47I GGWCC 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 112, 143
FaiI YATR 8 cut(s) 89, 110, 141, 153, 160, 207, 261, 331
FatI CATG 2 cut(s) 108, 139
FblI GTMKAC 1 cut(s) 306
HaeIII GGCC 3 cut(s) 194, 215, 324
Hin1II CATG 2 cut(s) 112, 143
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 46, 249, 307
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 3 cut(s) 46, 249, 307
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 21, 72, 247
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 91, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 112, 143
LpnPI CCDG 4 cut(s) 48, 78, 230, 263
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 296
MboII GAAGA 1 cut(s) 199
MluCI AATT 2 cut(s) 84, 148
MnlI CCTC 2 cut(s) 22, 220
MseI TTAA 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 232
NcoI CCATGG 1 cut(s) 108
NlaIII CATG 2 cut(s) 112, 143
NlaIV GGNNCC 1 cut(s) 33
NmeAIII GCCGAG 1 cut(s) 191
NspI RCATGY 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PpuMI RGGWCCY 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 2 cut(s) 32, 214
PspPPI RGGWCCY 1 cut(s) 32
RsaI GTAC 3 cut(s) 138, 176, 248
RsaNI GTAC 3 cut(s) 137, 175, 247
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 54
Sau96I GGNCC 2 cut(s) 32, 214
SetI ASST 6 cut(s) 13, 83, 99, 186, 237, 294
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 32
Sse9I AATT 2 cut(s) 84, 148
SsiI CCGC 2 cut(s) 124, 241
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 84, 148
TatI WGTACW 2 cut(s) 174, 246
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 32
XceI RCATGY 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.