FvH4_4g05272

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000160
Physical Location & Seq
Reverse (-)
4550698 .. 4551237
540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05272.t1

Sequence Viewer

Length: 540 bp
ATGTACGGTCATGATGCCGTCCTTCCCCTCGAGATCAATATAGCTTCACTCCGCGTTCAGGAACAGCATCAACTACTTGGCGAGGATTATGTCCAAGTTATGTGGCAGGAGCTTGAGGATCTCGACGAGCACCGCGTCGCCGCTTTCAACAATCTCGTCCTCGAGAAACAACGCATCGCGCGTTCGTACGATAAAGTCACGCGCGCACGGAGCTATGCTGAGGGCCAAAAAGTGTGGCGCGCGGTACTCTCACTTGGGGAAAAAACCGACGGTCGGGACACGTGGTCCGCTCGATGGGAAGGCCCCTTTATTATTCATCGTATACTCCCCAAGAGGGCATACCACCTGCGCGACTTGGACGACACCATTCATCGCAATCCTATTAATGGCCGCTTCCTCAAGCGCCACATTGCAAGAGTTTGGGAACGCGAGGATCCTCCACCTCCCCCAGACTCCGTCACCACAGTCAATAGTGCTACGCACCATCGCATTCTCGCTCCGCCGCCTAGCACTAGGGGGCAATCCGGGATAGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

180

Amino Acids

20.76

Weight (kDa)

6.76

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 354
Acc36I ACCTGC 1 cut(s) 354
AccBSI CCGCTC 1 cut(s) 290
AccI GTMKAC 1 cut(s) 322
AciI CCGC 8 cut(s) 52, 133, 141, 242, 288, 391, 500, 503
AclWI GGATC 3 cut(s) 126, 428, 441
AcoI YGGCCR 1 cut(s) 388
AcvI CACGTG 1 cut(s) 282
AfaI GTAC 3 cut(s) 5, 188, 246
AfiI CCNNNNNNNGG 5 cut(s) 58, 273, 294, 334, 386
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 1 cut(s) 148
AhdI GACNNNNNGTC 1 cut(s) 283
AluBI AGCT 3 cut(s) 44, 112, 213
AluI AGCT 3 cut(s) 44, 112, 213
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 3 cut(s) 126, 428, 441
Ama87I CYCGRG 2 cut(s) 29, 161
AoxI GGCC 3 cut(s) 223, 301, 388
AseI ATTAAT 1 cut(s) 384
AspLEI GCGC 7 cut(s) 181, 204, 206, 240, 242, 351, 405
AspS9I GGNCC 3 cut(s) 223, 285, 302
AsuC2I CCSGG 1 cut(s) 526
AsuHPI GGTGA 1 cut(s) 451
AvaI CYCGRG 2 cut(s) 29, 161
AvaII GGWCC 1 cut(s) 285
BamHI GGATCC 1 cut(s) 433
BbrPI CACGTG 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 132
BbvCI CCTCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 288, 492
BceAI ACGGC 1 cut(s) 2
BcnI CCSGG 1 cut(s) 526
BfaI CTAG 2 cut(s) 507, 513
BfoI RGCGCY 1 cut(s) 406
BfuAI ACCTGC 1 cut(s) 354
BisI GCNGC 3 cut(s) 141, 391, 503
BlsI GCNGC 3 cut(s) 142, 392, 504
Bme1390I CCNGG 1 cut(s) 526
Bme18I GGWCC 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 283
BmeT110I CYCGRG 2 cut(s) 29, 161
BmgT120I GGNCC 3 cut(s) 223, 285, 302
BmiI GGNNCC 2 cut(s) 304, 435
BmrFI CCNGG 1 cut(s) 526
BmsI GCATC 3 cut(s) 4, 76, 183
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 2 cut(s) 134, 383
BpuMI CCSGG 1 cut(s) 526
BsaAI YACGTR 1 cut(s) 282
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 273, 294, 334, 386
Bse3DI GCAATG 1 cut(s) 408
BseLI CCNNNNNNNGG 5 cut(s) 58, 273, 294, 334, 386
BseMI GCAATG 1 cut(s) 408
BseMII CTCAG 1 cut(s) 210
BsePI GCGCGC 2 cut(s) 202, 238
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 3 cut(s) 225, 303, 390
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 2 cut(s) 29, 161
BsiSI CCGG 1 cut(s) 525
BsiWI CGTACG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 5 cut(s) 58, 273, 294, 334, 386
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 3 cut(s) 225, 303, 390
BsoBI CYCGRG 2 cut(s) 29, 161
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 33, 118, 433
BspACI CCGC 8 cut(s) 52, 133, 141, 242, 288, 391, 500, 503
BspANI GGCC 3 cut(s) 225, 303, 390
BspCNI CTCAG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 304, 435
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 3 cut(s) 126, 428, 441
BsrBI CCGCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 408
BssHII GCGCGC 2 cut(s) 202, 238
BssMI GATC 3 cut(s) 33, 118, 433
BssNAI GTATAC 1 cut(s) 323
Bst1107I GTATAC 1 cut(s) 323
Bst4CI ACNGT 3 cut(s) 8, 272, 466
BstBAI YACGTR 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 204, 240
BstDEI CTNAG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 7 cut(s) 181, 204, 206, 240, 242, 351, 405
BstKTI GATC 3 cut(s) 36, 121, 436
BstMBI GATC 3 cut(s) 33, 118, 433
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 524
BstX2I RGATCY 2 cut(s) 118, 433
BstYI RGATCY 2 cut(s) 118, 433
BstZ17I GTATAC 1 cut(s) 323
BsuRI GGCC 3 cut(s) 225, 303, 390
BtgZI GCGATG 3 cut(s) 160, 356, 470
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 204, 240
CciI TCATGA 1 cut(s) 10
CfoI GCGC 7 cut(s) 181, 204, 206, 240, 242, 351, 405
Cfr13I GGNCC 3 cut(s) 223, 285, 302
CseI GACGC 1 cut(s) 124
Csp6I GTAC 3 cut(s) 4, 187, 245
CspCI CAANNNNNGTGG 4 cut(s) 83, 118, 215, 250
CviAII CATG 1 cut(s) 11
CviJI RGCY 6 cut(s) 44, 112, 213, 225, 303, 390
CviKI_1 RGCY 6 cut(s) 44, 112, 213, 225, 303, 390
CviQI GTAC 3 cut(s) 4, 187, 245
DdeI CTNAG 1 cut(s) 219
DpnI GATC 3 cut(s) 35, 120, 435
DpnII GATC 3 cut(s) 33, 118, 433
DriI GACNNNNNGTC 1 cut(s) 283
EaeI YGGCCR 1 cut(s) 388
Eam1105I GACNNNNNGTC 1 cut(s) 283
EciI GGCGGA 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 285
Eco72I CACGTG 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 29, 161
EcoO109I RGGNCCY 1 cut(s) 302
FaeI CATG 1 cut(s) 14
FaiI YATR 7 cut(s) 12, 41, 90, 101, 216, 323, 340
FaqI GGGAC 1 cut(s) 290
FatI CATG 1 cut(s) 10
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 141, 391, 503
Fsp4HI GCNGC 3 cut(s) 141, 391, 503
FspBI CTAG 2 cut(s) 507, 513
GlaI GCGC 7 cut(s) 180, 203, 205, 239, 241, 350, 404
GluI GCNGC 3 cut(s) 141, 391, 503
HaeII RGCGCY 1 cut(s) 406
HaeIII GGCC 3 cut(s) 225, 303, 390
HapII CCGG 1 cut(s) 525
HgaI GACGC 1 cut(s) 124
HhaI GCGC 7 cut(s) 181, 204, 206, 240, 242, 351, 405
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 7 cut(s) 179, 202, 204, 238, 240, 349, 403
HinP1I GCGC 7 cut(s) 179, 202, 204, 238, 240, 349, 403
HinfI GANTC 1 cut(s) 452
HpaII CCGG 1 cut(s) 525
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 1 cut(s) 323
Hpy188III TCNNGA 6 cut(s) 11, 31, 59, 122, 163, 275
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 3 cut(s) 128, 140, 272
HpyAV CCTTC 2 cut(s) 32, 293
HpyCH4III ACNGT 3 cut(s) 8, 272, 466
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 7 cut(s) 179, 202, 204, 238, 240, 349, 403
Kzo9I GATC 3 cut(s) 33, 118, 433
LmnI GCTCC 3 cut(s) 109, 210, 502
LpnPI CCDG 4 cut(s) 44, 92, 359, 462
LweI GCATC 3 cut(s) 4, 76, 183
MaeI CTAG 2 cut(s) 507, 513
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 196, 457
MalI GATC 3 cut(s) 35, 120, 435
MbiI CCGCTC 1 cut(s) 290
MboI GATC 3 cut(s) 33, 118, 433
MflI RGATCY 2 cut(s) 118, 433
MhlI GDGCHC 1 cut(s) 132
MlyI GAGTC 1 cut(s) 446
MseI TTAA 1 cut(s) 384
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 526
Mva1269I GAATGC 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 1 cut(s) 526
NdeII GATC 3 cut(s) 33, 118, 433
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 2 cut(s) 304, 435
NmuCI GTSAC 2 cut(s) 196, 457
PaeR7I CTCGAG 2 cut(s) 29, 161
PagI TCATGA 1 cut(s) 10
PaqCI CACCTGC 1 cut(s) 354
PauI GCGCGC 2 cut(s) 202, 238
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 178
PctI GAATGC 1 cut(s) 489
Pfl23II CGTACG 1 cut(s) 186
PflFI GACNNNGTC 1 cut(s) 455
PfoI TCCNGGA 1 cut(s) 524
PkrI GCNGC 3 cut(s) 142, 392, 504
PleI GAGTC 1 cut(s) 446
PmaCI CACGTG 1 cut(s) 282
PmlI CACGTG 1 cut(s) 282
PpsI GAGTC 1 cut(s) 446
Ppu21I YACGTR 1 cut(s) 282
PshBI ATTAAT 1 cut(s) 384
PspCI CACGTG 1 cut(s) 282
PspLI CGTACG 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 304, 435
PspPI GGNCC 3 cut(s) 223, 285, 302
PsuI RGATCY 2 cut(s) 118, 433
PsyI GACNNNGTC 1 cut(s) 455
PteI GCGCGC 2 cut(s) 202, 238
RsaI GTAC 3 cut(s) 5, 188, 246
RsaNI GTAC 3 cut(s) 4, 187, 245
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 3 cut(s) 141, 391, 503
Sau3AI GATC 3 cut(s) 33, 118, 433
Sau96I GGNCC 3 cut(s) 223, 285, 302
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 526
SduI GDGCHC 1 cut(s) 132
SetI ASST 6 cut(s) 46, 114, 215, 284, 348, 445
SfaNI GCATC 3 cut(s) 4, 76, 183
Sfr274I CTCGAG 2 cut(s) 29, 161
SinI GGWCC 1 cut(s) 285
SlaI CTCGAG 2 cut(s) 29, 161
SmlI CTYRAG 4 cut(s) 29, 113, 161, 398
SmoI CTYRAG 4 cut(s) 29, 113, 161, 398
SsiI CCGC 8 cut(s) 52, 133, 141, 242, 288, 391, 500, 503
SspMI CTAG 2 cut(s) 507, 513
StyD4I CCNGG 1 cut(s) 524
TaaI ACNGT 3 cut(s) 8, 272, 466
TaiI ACGT 1 cut(s) 284
TaqI TCGA 4 cut(s) 30, 123, 162, 292
TauI GCSGC 3 cut(s) 143, 393, 505
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 2 cut(s) 196, 457
Tsp45I GTSAC 2 cut(s) 196, 457
TspDTI ATGAA 2 cut(s) 305, 359
TspGWI ACGGA 2 cut(s) 223, 445
Tth111I GACNNNGTC 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 285
VspI ATTAAT 1 cut(s) 384
XhoI CTCGAG 2 cut(s) 29, 161
XmiI GTMKAC 1 cut(s) 322
XspI CTAG 2 cut(s) 507, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.