Rorug01G0056400

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000160
Physical Location & Seq
Reverse (-)
9307491 .. 9313451
5961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0056400.1

Sequence Viewer

Length: 2259 bp
ATGAGCAAAGAGTTGAGATTCATTGTGAAGGCCTGGGAAGCAACAGTGCGTAAAACACATATTGGAGGAAAGAAGAGGGCCAACCCTTTATTCACAACAATGTCTGTAGTCCCTGCAGATGATGAGCCAGGTGAAACCTATCATACCGAGAAGGTCCTCGCCAATGGTGACTTCTACACAGGCCAATGGGCTAACAGCTTTGCTCATGGGCAAGGCAAGTACCTGTGGGCAGATGGGTGCATGTATGTTGGAGAATGGCAGAAAGGTAAGACAGCAGGGAAGGGAAAGTTCAGCTGGCCTTCTGGTGCCACTTATGAAGGAGACTTCAAAAATGGGTTTATGGATGGTAAAGGGACTTATACAGGTTCTTTTGGAGAAACATATCGAGGTTCATGGGTGATGAATCTGAGATATGGGCAGGGGACTAAGAGCTTTGTCAATGGGGATCATTATGAGGGTGAATGGCGCCGAGGATTGCAGGACGGCCAGGGGAGGTACCAGTGGAAGAATGGGAACCATTATATTGGTCAATGGAGGAATGGGATGATTCATGGGAGTGGGACTATGATTTGGAGCAATGGGAATAGGTATGATGGGTCTTGGGAAGAAGGGTTGCCTAAAGGAAATGGTACATTTAGGTGGGCTGATGGGAGTTTCTATGTGGGTGTTTGGAGTAAGGAGAGTAAAGATCAGATGGGGACTTATTATCCAGCTGGTTCTTCTGGTGGTCATGTGGATTGGGATCCTCAGGAGGTGTTTGCAGTGGACTTGAATGATTGTAAGGTATGTCCAGTGGAGACTATTTCGATTTTCCCTTCACAGAAGATGCTGAATTGGCCTGGAATGGAAGGGGAGTTTATGAACAAGCCACCTATTTATAAGAATGGAAGCGAAGGGAATGTGAGGCCTAGGAGATCGTCTGATGCGAGGTCGAGTAATTTTAGCAGAGGATCCAATTGTGATAGCACTTTGGATGGAAATGTTGGGCTCGAAGGTTCGTTTGCTAGCAACAGGTTTGGAGTTCAGCCAATGAAGAAACAAGGGGTCACAATATCGAAAGGACATAAGAATTATGAGCTTATGCTTAATCTGCAGTTGGGGATCAGGCATTCTGTTGGAAGGCCGGCTCCAACTACATCCCTTGATCTGAAGACTTCAGCATTTGATCCCAGGGAAAAAGTTTGGACGAAATTTCCCCCAGAAGGATCCAAGTATACTCCACCTCACCAGTCGAGTGACTTCAAATGGAAGGATTATTGCCCTGTGGTTTTCAGGACTCTAAGGAAACTGTTTAAGGTAGATCCAGCAGATTACATGATATCACTATGTGGAAATGACGCCCTTCGAGAACTCTCATCTCCTGGAAAGAGTGGAAGCTTCTTTTACTTGACCAATGATGACCGTTACATGATAAAGACCATGAAGAAAGCAGAAGTAAAAGTTCTGCTGAGAATGCTTCCAGCTTACTATAATCATGTTCGAGCCTTTGAGAATACTCTGGTCACAAAGTTTTTTGGTCTTCATTGCGTAAAATTAACAGGGCCTACCCAAAAGAAGGTGCGGTTTGTCATAATGGGGAATCTATTTTGCTCCGAATACGGCATTCATAGAAGGTTTGATTTGAAAGGCTCTTCCCTTGGCCGTACAACCAACAAACCTGCGGCAGAAATTGATGCAACAACAACTCTTAAAGATCTTGATCTTAATTATATATTTAGGTTACAGAAGGTTTGGTTTCAAGAGTTCTGCAGGCAAGTGGACAGAGATTGCGACTTCCTTGAACAGGAAAGAATAATGGACTACAGTCTTTTGATTGGTCTTCACTTCCGAGAAGCTTCATGCAACGATCCCCTCGCAACTCCAGACCGTTCTGGAGTGCGCACTCCAACTGGAAATGGTGACCCTGACAATGAAGGAGCCCCTCGCATTTTTAAAGGTGAAATGGATCGGCTTCTTTCTGATCCAAACAGGTGGGCTTCTATTAGATTAGGTATTAATATGCCAGCATGGGCTGAAAAGACTCTGAGAAAAACTGATTGTGAGGCACAGTTGGTTGGAGAACCAACAGGAGAGTTGTATGATGTTATCCTGTTTTTTGGTATAATTGACATACTACAGGATTATGATATCAGCAAAAGGCTTGAGCATGCATACAAGTCATTCCAATATGACCCAACTTCAATCTCTGCTGTTGATCCAAAGCAATACTCTAGACGCTTTCGCGCTTTCATCTTCAGAGTTTTTGTAGAAGACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

752

Amino Acids

85.39

Weight (kDa)

8.87

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORN PF02493 59 - 81 1.1e-06 MORN repeat
MORN PF02493 151 - 172 2.2e-06 MORN repeat
MORN PF02493 174 - 196 2e-08 MORN repeat
PIP5K PF01504 442 - 745 7.4e-101 Phosphatidylinositol-4-phosphate 5-Kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 879
Acc16I TGCGCA 1 cut(s) 1880
Acc36I ACCTGC 1 cut(s) 1666
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 3 cut(s) 305, 465, 495
AccI GTMKAC 1 cut(s) 1214
AccII CGCG 1 cut(s) 2223
AciI CCGC 2 cut(s) 1561, 1661
AcoI YGGCCR 2 cut(s) 484, 1639
AcsI RAATTY 1 cut(s) 1190
AcuI CTGAAG 3 cut(s) 1140, 1169, 2218
AcyI GRCGYC 2 cut(s) 466, 1338
AdeI CACNNNGTG 1 cut(s) 1328
AfaI GTAC 4 cut(s) 221, 497, 631, 1645
AfiI CCNNNNNNNGG 3 cut(s) 1202, 1555, 1783
AgsI TTSAA 7 cut(s) 328, 772, 1243, 1624, 1739, 1781, 2181
AjnI CCWGG 6 cut(s) 32, 127, 486, 838, 1169, 1360
AjuI GAANNNNNNNTTGG 4 cut(s) 74, 106, 155, 187
AluBI AGCT 8 cut(s) 198, 294, 432, 713, 1078, 1377, 1463, 1835
AluI AGCT 8 cut(s) 198, 294, 432, 713, 1078, 1377, 1463, 1835
Alw26I GTCTC 2 cut(s) 315, 791
ApoI RAATTY 1 cut(s) 1190
AseI ATTAAT 1 cut(s) 1995
Asp718I GGTACC 1 cut(s) 495
AspA2I CCTAGG 1 cut(s) 908
AspLEI GCGC 3 cut(s) 468, 1881, 2225
AspS9I GGNCC 3 cut(s) 78, 154, 1541
AsuHPI GGTGA 7 cut(s) 143, 179, 409, 470, 1217, 1910, 1949
AsuNHI GCTAGC 1 cut(s) 1004
AvaII GGWCC 1 cut(s) 154
AvrII CCTAGG 1 cut(s) 908
AxyI CCTNAGG 1 cut(s) 747
BamHI GGATCC 3 cut(s) 742, 950, 1205
BanI GGYRCC 3 cut(s) 305, 465, 495
BanII GRGCYC 2 cut(s) 990, 1921
BbsI GAAGAC 3 cut(s) 1157, 1511, 1811
BccI CCATC 6 cut(s) 227, 338, 587, 641, 688, 968
BceAI ACGGC 3 cut(s) 499, 1615, 1626
BciT130I CCWGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
BcoDI GTCTC 2 cut(s) 315, 791
BfaI CTAG 3 cut(s) 909, 1005, 2211
BfmI CTRYAG 6 cut(s) 105, 114, 1091, 1747, 1801, 2114
BfoI RGCGCY 1 cut(s) 469
BfuAI ACCTGC 1 cut(s) 1666
BglII AGATCT 1 cut(s) 1693
BisI GCNGC 1 cut(s) 1662
BlnI CCTAGG 1 cut(s) 908
BlsI GCNGC 1 cut(s) 1663
Bme1390I CCNGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 78, 154, 1541
BmiI GGNNCC 9 cut(s) 307, 467, 497, 515, 744, 952, 1128, 1207, 1918
BmrFI CCNGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
BmsI GCATC 3 cut(s) 816, 913, 1663
BmtI GCTAGC 1 cut(s) 1008
BoxI GACNNNNGTC 1 cut(s) 1803
BpiI GAAGAC 3 cut(s) 1157, 1511, 1811
BpmI CTGGAG 2 cut(s) 1845, 1893
BpuEI CTTGAG 1 cut(s) 2162
BsaBI GATNNNNATC 2 cut(s) 741, 1698
BsaHI GRCGYC 2 cut(s) 466, 1338
BsaJI CCNNGG 7 cut(s) 33, 469, 487, 908, 1169, 1170, 1636
Bsc4I CCNNNNNNNGG 3 cut(s) 1202, 1555, 1783
Bse118I RCCGGY 1 cut(s) 1123
Bse1I ACTGG 4 cut(s) 499, 791, 1228, 1894
Bse21I CCTNAGG 1 cut(s) 747
Bse3DI GCAATG 2 cut(s) 583, 1522
Bse8I GATNNNNATC 2 cut(s) 741, 1698
BseBI CCWGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
BseDI CCNNGG 7 cut(s) 33, 469, 487, 908, 1169, 1170, 1636
BseGI GGATG 4 cut(s) 349, 549, 979, 1136
BseJI GATNNNNATC 2 cut(s) 741, 1698
BseLI CCNNNNNNNGG 3 cut(s) 1202, 1555, 1783
BseMI GCAATG 2 cut(s) 583, 1522
BseMII CTCAG 4 cut(s) 398, 761, 1439, 2015
BseNI ACTGG 4 cut(s) 499, 791, 1228, 1894
Bsh1236I CGCG 1 cut(s) 2223
BshNI GGYRCC 3 cut(s) 305, 465, 495
BsiSI CCGG 1 cut(s) 1124
BslFI GGGAC 5 cut(s) 95, 367, 436, 574, 712
BslI CCNNNNNNNGG 3 cut(s) 1202, 1555, 1783
BsmAI GTCTC 2 cut(s) 315, 791
BsmFI GGGAC 5 cut(s) 95, 367, 436, 574, 712
BsmI GAATGC 3 cut(s) 1108, 1458, 1602
Bsp1286I GDGCHC 2 cut(s) 990, 1921
BspACI CCGC 2 cut(s) 1561, 1661
BspCNI CTCAG 4 cut(s) 399, 760, 1440, 2016
BspFNI CGCG 1 cut(s) 2223
BspLI GGNNCC 9 cut(s) 307, 467, 497, 515, 744, 952, 1128, 1207, 1918
BspMAI CTGCAG 3 cut(s) 118, 1095, 1751
BspMI ACCTGC 1 cut(s) 1666
BspOI GCTAGC 1 cut(s) 1008
BspQI GCTCTTC 1 cut(s) 1636
BspT107I GGYRCC 3 cut(s) 305, 465, 495
BsrDI GCAATG 2 cut(s) 583, 1522
BsrFI RCCGGY 1 cut(s) 1123
BsrI ACTGG 4 cut(s) 499, 791, 1228, 1894
BssAI RCCGGY 1 cut(s) 1123
BssECI CCNNGG 7 cut(s) 33, 469, 487, 908, 1169, 1170, 1636
BssNAI GTATAC 1 cut(s) 1215
BssNI GRCGYC 2 cut(s) 466, 1338
BssT1I CCWWGG 2 cut(s) 908, 1636
Bst1107I GTATAC 1 cut(s) 1215
Bst2UI CCWGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
Bst4CI ACNGT 6 cut(s) 46, 1290, 1403, 1805, 1868, 2049
Bst6I CTCTTC 2 cut(s) 68, 1636
BstACI GRCGYC 2 cut(s) 466, 1338
BstC8I GCNNGC 6 cut(s) 296, 1006, 1125, 1751, 2004, 2148
BstDEI CTNAG 6 cut(s) 407, 426, 747, 1280, 1448, 2024
BstEII GGTNACC 1 cut(s) 1898
BstENI CCTNNNNNAGG 1 cut(s) 1781
BstF5I GGATG 4 cut(s) 349, 549, 979, 1136
BstFNI CGCG 1 cut(s) 2223
BstH2I RGCGCY 1 cut(s) 469
BstHHI GCGC 3 cut(s) 468, 1881, 2225
BstMAI GTCTC 2 cut(s) 315, 791
BstMWI GCNNNNNNNGC 4 cut(s) 38, 835, 1090, 1453
BstNI CCWGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
BstNSI RCATGY 2 cut(s) 244, 2150
BstPAI GACNNNNGTC 1 cut(s) 1803
BstPI GGTNACC 1 cut(s) 1898
BstSCI CCNGG 6 cut(s) 32, 127, 486, 838, 1169, 1360
BstSFI CTRYAG 6 cut(s) 105, 114, 1091, 1747, 1801, 2114
BstUI CGCG 1 cut(s) 2223
BstV2I GAAGAC 3 cut(s) 1157, 1511, 1811
BstX2I RGATCY 5 cut(s) 742, 950, 1205, 1300, 1693
BstXI CCANNNNNNTGG 2 cut(s) 524, 1971
BstYI RGATCY 5 cut(s) 742, 950, 1205, 1300, 1693
BstZ17I GTATAC 1 cut(s) 1215
Bsu36I CCTNAGG 1 cut(s) 747
BtsCI GGATG 4 cut(s) 349, 549, 979, 1136
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 4 cut(s) 51, 506, 768, 798
BveI ACCTGC 1 cut(s) 1666
Cac8I GCNNGC 6 cut(s) 296, 1006, 1125, 1751, 2004, 2148
CfoI GCGC 3 cut(s) 468, 1881, 2225
Cfr10I RCCGGY 1 cut(s) 1123
Cfr13I GGNCC 3 cut(s) 78, 154, 1541
CseI GACGC 2 cut(s) 1346, 2223
Csp6I GTAC 4 cut(s) 220, 496, 630, 1644
CviQI GTAC 4 cut(s) 220, 496, 630, 1644
DdeI CTNAG 6 cut(s) 407, 426, 747, 1280, 1448, 2024
DinI GGCGCC 1 cut(s) 467
DraI TTTAAA 1 cut(s) 1933
DraIII CACNNNGTG 1 cut(s) 1328
EaeI YGGCCR 2 cut(s) 484, 1639
Eam1104I CTCTTC 2 cut(s) 68, 1636
EarI CTCTTC 2 cut(s) 68, 1636
Eco130I CCWWGG 2 cut(s) 908, 1636
Eco147I AGGCCT 2 cut(s) 32, 907
Eco24I GRGCYC 2 cut(s) 990, 1921
Eco32I GATATC 2 cut(s) 1320, 2128
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 3 cut(s) 1140, 1169, 2218
Eco81I CCTNAGG 1 cut(s) 747
Eco91I GGTNACC 1 cut(s) 1898
EcoNI CCTNNNNNAGG 1 cut(s) 1781
EcoO109I RGGNCCY 2 cut(s) 154, 1541
EcoO65I GGTNACC 1 cut(s) 1898
EcoRII CCWGG 6 cut(s) 32, 127, 486, 838, 1169, 1360
EcoRV GATATC 2 cut(s) 1320, 2128
EcoT14I CCWWGG 2 cut(s) 908, 1636
EcoT22I ATGCAT 1 cut(s) 2152
EcoT38I GRGCYC 2 cut(s) 990, 1921
EgeI GGCGCC 1 cut(s) 467
EheI GGCGCC 1 cut(s) 467
ErhI CCWWGG 2 cut(s) 908, 1636
FaqI GGGAC 5 cut(s) 95, 367, 436, 574, 712
FblI GTMKAC 1 cut(s) 1214
Fnu4HI GCNGC 1 cut(s) 1662
FokI GGATG 4 cut(s) 356, 556, 986, 1123
FriOI GRGCYC 2 cut(s) 990, 1921
Fsp4HI GCNGC 1 cut(s) 1662
FspAI RTGCGCAY 1 cut(s) 1880
FspBI CTAG 3 cut(s) 909, 1005, 2211
FspI TGCGCA 1 cut(s) 1880
GlaI GCGC 3 cut(s) 467, 1880, 2224
GluI GCNGC 1 cut(s) 1662
GsuI CTGGAG 2 cut(s) 1845, 1893
HaeII RGCGCY 1 cut(s) 469
HapII CCGG 1 cut(s) 1124
HgaI GACGC 2 cut(s) 1346, 2223
HhaI GCGC 3 cut(s) 468, 1881, 2225
Hin1I GRCGYC 2 cut(s) 466, 1338
Hin6I GCGC 3 cut(s) 466, 1879, 2223
HinP1I GCGC 3 cut(s) 466, 1879, 2223
HindIII AAGCTT 2 cut(s) 1375, 1833
HinfI GANTC 6 cut(s) 18, 403, 547, 1276, 1579, 2020
HpaII CCGG 1 cut(s) 1124
HphI GGTGA 7 cut(s) 143, 179, 409, 470, 1217, 1910, 1949
Hpy166II GTNNAC 3 cut(s) 766, 1215, 1759
Hpy188I TCNGA 9 cut(s) 408, 693, 922, 1149, 1594, 1829, 1960, 2025, 2237
Hpy188III TCNNGA 8 cut(s) 749, 1273, 1346, 1697, 1739, 1862, 1872, 2211
Hpy8I GTNNAC 3 cut(s) 766, 1215, 1759
HpyCH4III ACNGT 6 cut(s) 46, 1290, 1403, 1805, 1868, 2049
HpyCH4V TGCA 9 cut(s) 116, 240, 478, 761, 1093, 1676, 1749, 1842, 2150
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 835, 1090, 1453
HpyF3I CTNAG 6 cut(s) 407, 426, 747, 1280, 1448, 2024
Hsp92I GRCGYC 2 cut(s) 466, 1338
HspAI GCGC 3 cut(s) 466, 1879, 2223
KasI GGCGCC 1 cut(s) 465
KpnI GGTACC 1 cut(s) 499
KroI GCCGGC 1 cut(s) 1123
KroNI GCCGGC 1 cut(s) 1125
LguI GCTCTTC 1 cut(s) 1636
LmnI GCTCC 4 cut(s) 573, 1132, 1595, 1916
LweI GCATC 3 cut(s) 816, 913, 1663
MaeI CTAG 3 cut(s) 909, 1005, 2211
MaeIII GTNAC 7 cut(s) 167, 1045, 1235, 1403, 1501, 1719, 1898
MfeI CAATTG 1 cut(s) 955
MflI RGATCY 5 cut(s) 742, 950, 1205, 1300, 1693
MhlI GDGCHC 2 cut(s) 990, 1921
MluCI AATT 9 cut(s) 832, 937, 955, 1069, 1190, 1532, 1668, 1705, 2103
Mly113I GGCGCC 1 cut(s) 466
MlyI GAGTC 2 cut(s) 1270, 2014
MmeI TCCRAC 5 cut(s) 229, 1096, 1154, 1910, 2035
Mph1103I ATGCAT 1 cut(s) 2152
MroNI GCCGGC 1 cut(s) 1123
MseI TTAA 7 cut(s) 1086, 1293, 1535, 1689, 1704, 1932, 1995
MslI CAYNNNNRTG 3 cut(s) 98, 555, 637
MspA1I CMGCKG 2 cut(s) 294, 713
MspI CCGG 1 cut(s) 1124
MspR9I CCNGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
MunI CAATTG 1 cut(s) 955
Mva1269I GAATGC 3 cut(s) 1108, 1458, 1602
MvaI CCWGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
MvnI CGCG 1 cut(s) 2223
MwoI GCNNNNNNNGC 4 cut(s) 38, 835, 1090, 1453
NaeI GCCGGC 1 cut(s) 1125
NarI GGCGCC 1 cut(s) 466
NgoMIV GCCGGC 1 cut(s) 1123
NheI GCTAGC 1 cut(s) 1004
NlaIV GGNNCC 9 cut(s) 307, 467, 497, 515, 744, 952, 1128, 1207, 1918
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 5 cut(s) 167, 1045, 1235, 1501, 1898
NsbI TGCGCA 1 cut(s) 1880
NsiI ATGCAT 1 cut(s) 2152
NspI RCATGY 2 cut(s) 244, 2150
PaeI GCATGC 1 cut(s) 2150
PasI CCCWGGG 1 cut(s) 1170
PceI AGGCCT 2 cut(s) 32, 907
PciSI GCTCTTC 1 cut(s) 1636
PcsI WCGNNNNNNNCGW 1 cut(s) 923
PctI GAATGC 3 cut(s) 1108, 1458, 1602
PdiI GCCGGC 1 cut(s) 1125
PfeI GAWTC 4 cut(s) 18, 403, 547, 1579
PfoI TCCNGGA 1 cut(s) 1360
PkrI GCNGC 1 cut(s) 1663
PleI GAGTC 2 cut(s) 1270, 2014
PluTI GGCGCC 1 cut(s) 469
PpsI GAGTC 2 cut(s) 1270, 2014
PpuMI RGGWCCY 1 cut(s) 154
PshAI GACNNNNGTC 1 cut(s) 1803
PshBI ATTAAT 1 cut(s) 1995
PsiI TTATAA 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 6 cut(s) 32, 127, 486, 838, 1169, 1360
PspEI GGTNACC 1 cut(s) 1898
PspGI CCWGG 6 cut(s) 32, 127, 486, 838, 1169, 1360
PspN4I GGNNCC 9 cut(s) 307, 467, 497, 515, 744, 952, 1128, 1207, 1918
PspPI GGNCC 3 cut(s) 78, 154, 1541
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 3 cut(s) 118, 1095, 1751
PsuI RGATCY 5 cut(s) 742, 950, 1205, 1300, 1693
PvuII CAGCTG 2 cut(s) 294, 713
RsaI GTAC 4 cut(s) 221, 497, 631, 1645
RsaNI GTAC 4 cut(s) 220, 496, 630, 1644
RseI CAYNNNNRTG 3 cut(s) 98, 555, 637
SapI GCTCTTC 1 cut(s) 1636
SaqAI TTAA 7 cut(s) 1086, 1293, 1535, 1689, 1704, 1932, 1995
SatI GCNGC 1 cut(s) 1662
Sau96I GGNCC 3 cut(s) 78, 154, 1541
SchI GAGTC 2 cut(s) 1270, 2014
ScrFI CCNGG 6 cut(s) 34, 129, 488, 840, 1171, 1362
SduI GDGCHC 2 cut(s) 990, 1921
SfaNI GCATC 3 cut(s) 816, 913, 1663
SfcI CTRYAG 6 cut(s) 105, 114, 1091, 1747, 1801, 2114
SfoI GGCGCC 1 cut(s) 467
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 3 cut(s) 98, 555, 637
SmlI CTYRAG 1 cut(s) 2141
SmoI CTYRAG 1 cut(s) 2141
SphI GCATGC 1 cut(s) 2150
Sse9I AATT 9 cut(s) 832, 937, 955, 1069, 1190, 1532, 1668, 1705, 2103
SseBI AGGCCT 2 cut(s) 32, 907
SsiI CCGC 2 cut(s) 1561, 1661
SspDI GGCGCC 1 cut(s) 465
SspMI CTAG 3 cut(s) 909, 1005, 2211
StuI AGGCCT 2 cut(s) 32, 907
StyD4I CCNGG 6 cut(s) 32, 127, 486, 838, 1169, 1360
StyI CCWWGG 2 cut(s) 908, 1636
TaaI ACNGT 6 cut(s) 46, 1290, 1403, 1805, 1868, 2049
TaqI TCGA 8 cut(s) 385, 806, 932, 990, 1055, 1232, 1345, 1480
TasI AATT 9 cut(s) 832, 937, 955, 1069, 1190, 1532, 1668, 1705, 2103
TauI GCSGC 1 cut(s) 1664
TfiI GAWTC 4 cut(s) 18, 403, 547, 1579
Tru1I TTAA 7 cut(s) 1086, 1293, 1535, 1689, 1704, 1932, 1995
Tru9I TTAA 7 cut(s) 1086, 1293, 1535, 1689, 1704, 1932, 1995
TscAI CASTG 4 cut(s) 51, 506, 768, 798
TseFI GTSAC 5 cut(s) 167, 1045, 1235, 1501, 1898
Tsp45I GTSAC 5 cut(s) 167, 1045, 1235, 1501, 1898
TspRI CASTG 4 cut(s) 51, 506, 768, 798
VpaK11BI GGWCC 1 cut(s) 154
VspI ATTAAT 1 cut(s) 1995
XagI CCTNNNNNAGG 1 cut(s) 1781
XapI RAATTY 1 cut(s) 1190
XbaI TCTAGA 1 cut(s) 2210
XceI RCATGY 2 cut(s) 244, 2150
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmaJI CCTAGG 1 cut(s) 908
XmiI GTMKAC 1 cut(s) 1214
XspI CTAG 3 cut(s) 909, 1005, 2211
Zsp2I ATGCAT 1 cut(s) 2152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.