RchiOBHm_Chr3g0462151

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000160
Physical Location & Seq
Forward (+)
9922988 .. 9925368
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42854

Sequence Viewer

Length: 1137 bp
ATGGAGAACATTGAAATGGATACTGCACAAGTCGGCCAGATGTATCACGAGCCTTGGCTACTATATTTTGATGGCTCAACCACCAGTGACTCCGCCGGGGCAGGAATAGTGATTGAATCTCCAACCGGCCAAAAGCATCAATATGCCTTCAAACTGGACTTTAACTGCACAAACAACCAAGCCGAATATGAAGCCTTAATAATTGGCCTGGAAGTATTGGAAGAACTTGGAGCAATAAGAGTTAAGGTGTTTGGGGACTCACTATTAGTCATCAATCAAATGCTCCAGGTTTTTAGATGTTCAAATCTCTCGTTGGCCACTTATTATGCCGCCGCACAACAACTGCTTAGTTGTTTTCATGATGTGGAATTTCACCATCTTCCGCGAGAACTCAATCGTGAAGCGAATGAAATGGCTCAAATTGCTTCTGGCGTCAGCATTCTAGCAGGCCAAACTAACAAAATCATCACAATTGAGAGAAAATCGTTGCCATCTTTGGCCGAGAGAGGTATGCCGGCCGATGTCTTTGAGCTAGACGTGCCACTTGGTGATTGGAGATTTTACATAATCCAACACCTTTTGATGAAAATTGATGGCGGTGGGAGCCGAAAAATTAGAATGTTGTCTAGCAAGTTCACAATTAAAAATGGTGAACTGCTAAGGAAAAGTCCTGACGATGACCTTCTTCTTCGTTGCCTCGGCTCTGAAGATGCCCAACTAGTAATGGCTGAAGTTCATGAGGGTATTTGCGGAGCACACCAGGCTGGGATAAAAATGAGATGGTTAATTAGGAGACATGGTTACTACTGGCCAACTATTCTTAAAGACTGTATTGAGTATGCTCGAGGCTGTGCTCCATGCCAACTTCACGGATCCATTCAAAGAGTTCCTGCTTTCCCCATGAATCCAATAGTGAAGCCATGGCCTTTTCGGGGCTGGGCAATGGATATAATTGGCCAAATCTCTCCCCCATCTTCCAAACAGCACAGATGGATACTGGTAGCCACAGACTACTTTACAAAATGGGTTGAAGCCGTTCCATTCACCTCCATCAGTAGTGCCGAGGTGATCAAATTCATTGAGCAAAACATCATTCACCGCTTCGGTATTCTAGAAACTATAAGAACTTACCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

378

Amino Acids

42.83

Weight (kDa)

6.19

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 20 - 98 9e-06 RNase H
RVT_3 PF13456 23 - 140 7.3e-20 Reverse transcriptase-like
Integrase_H2C2 PF17921 238 - 290 8.7e-09 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 385
AciI CCGC 7 cut(s) 93, 330, 333, 383, 597, 750, 1099
AclWI GGATC 2 cut(s) 867, 880
AcoI YGGCCR 7 cut(s) 34, 127, 315, 498, 516, 809, 955
AcsI RAATTY 2 cut(s) 368, 1073
AcuI CTGAAG 2 cut(s) 726, 750
AcyI GRCGYC 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 548
AfiI CCNNNNNNNGG 1 cut(s) 932
AgsI TTSAA 6 cut(s) 14, 116, 151, 303, 881, 1031
AhlI ACTAGT 1 cut(s) 718
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 3 cut(s) 207, 285, 759
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw21I GWGCWC 2 cut(s) 757, 856
Alw26I GTCTC 1 cut(s) 787
AlwI GGATC 2 cut(s) 867, 880
Ama87I CYCGRG 1 cut(s) 843
ApoI RAATTY 2 cut(s) 368, 1073
Asp700I GAANNNNTTC 1 cut(s) 1035
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 6 cut(s) 365, 560, 662, 1036, 1078, 1088
AvaI CYCGRG 1 cut(s) 843
BalI TGGCCA 3 cut(s) 317, 811, 957
BamHI GGATCC 1 cut(s) 872
BauI CACGAG 1 cut(s) 47
Bbv12I GWGCWC 2 cut(s) 757, 856
BccI CCATC 8 cut(s) 65, 384, 499, 587, 774, 979, 984, 1058
BceAI ACGGC 1 cut(s) 1019
BciT130I CCWGG 3 cut(s) 209, 287, 761
BciVI GTATCC 2 cut(s) 13, 987
BclI TGATCA 1 cut(s) 1068
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 787
BcuI ACTAGT 1 cut(s) 718
BfaI CTAG 5 cut(s) 443, 533, 627, 719, 1112
BfuI GTATCC 2 cut(s) 13, 987
BisI GCNGC 2 cut(s) 330, 333
BlsI GCNGC 2 cut(s) 331, 334
Bme1390I CCNGG 4 cut(s) 97, 209, 287, 761
BmeT110I CYCGRG 1 cut(s) 843
BmgBI CACGTC 1 cut(s) 538
BmiI GGNNCC 2 cut(s) 605, 874
BmrFI CCNGG 4 cut(s) 97, 209, 287, 761
BmsI GCATC 2 cut(s) 145, 700
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 659
BpuMI CCSGG 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 5 cut(s) 53, 96, 697, 920, 1062
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 1 cut(s) 932
Bse118I RCCGGY 2 cut(s) 125, 514
Bse1I ACTGG 4 cut(s) 84, 159, 812, 1002
Bse3DI GCAATG 1 cut(s) 948
BseBI CCWGG 3 cut(s) 209, 287, 761
BseDI CCNNGG 5 cut(s) 53, 96, 697, 920, 1062
BseLI CCNNNNNNNGG 1 cut(s) 932
BseMI GCAATG 1 cut(s) 948
BseNI ACTGG 4 cut(s) 84, 159, 812, 1002
BseX3I CGGCCG 1 cut(s) 516
BseYI CCCAGC 2 cut(s) 764, 936
BsgI GTGCAG 2 cut(s) 9, 151
Bsh1236I CGCG 1 cut(s) 385
Bsh1285I CGRYCG 1 cut(s) 519
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 757, 856
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 3 cut(s) 96, 126, 515
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 932
BsmAI GTCTC 1 cut(s) 787
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 843
Bsp1286I GDGCHC 2 cut(s) 757, 856
Bsp143I GATC 2 cut(s) 872, 1068
Bsp19I CCATGG 1 cut(s) 920
BspACI CCGC 7 cut(s) 93, 330, 333, 383, 597, 750, 1099
BspFNI CGCG 1 cut(s) 385
BspHI TCATGA 2 cut(s) 358, 736
BspLI GGNNCC 2 cut(s) 605, 874
BspPI GGATC 2 cut(s) 867, 880
BsrDI GCAATG 1 cut(s) 948
BsrFI RCCGGY 2 cut(s) 125, 514
BsrI ACTGG 4 cut(s) 84, 159, 812, 1002
BssAI RCCGGY 2 cut(s) 125, 514
BssECI CCNNGG 5 cut(s) 53, 96, 697, 920, 1062
BssMI GATC 2 cut(s) 872, 1068
BssNI GRCGYC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 2 cut(s) 53, 920
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 3 cut(s) 209, 287, 761
Bst4CI ACNGT 1 cut(s) 830
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 448, 516
BstDEI CTNAG 2 cut(s) 347, 659
BstDSI CCRYGG 1 cut(s) 920
BstFNI CGCG 1 cut(s) 385
BstKTI GATC 2 cut(s) 875, 1071
BstMAI GTCTC 1 cut(s) 787
BstMBI GATC 2 cut(s) 872, 1068
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 4 cut(s) 422, 538, 603, 761
BstNI CCWGG 3 cut(s) 209, 287, 761
BstSCI CCNGG 4 cut(s) 95, 207, 285, 759
BstUI CGCG 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 872
BstYI RGATCY 1 cut(s) 872
BstZI CGGCCG 1 cut(s) 516
BsuI GTATCC 2 cut(s) 13, 987
BtgI CCRYGG 1 cut(s) 920
BtrI CACGTC 1 cut(s) 538
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 448, 516
CciI TCATGA 2 cut(s) 358, 736
Cfr10I RCCGGY 2 cut(s) 125, 514
CseI GACGC 1 cut(s) 421
CviAII CATG 6 cut(s) 359, 737, 797, 858, 901, 921
DdeI CTNAG 2 cut(s) 347, 659
DpnI GATC 2 cut(s) 874, 1070
DpnII GATC 2 cut(s) 872, 1068
DraIII CACNNNGTG 1 cut(s) 548
EaeI YGGCCR 7 cut(s) 34, 127, 315, 498, 516, 809, 955
EagI CGGCCG 1 cut(s) 516
EciI GGCGGA 1 cut(s) 82
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 2 cut(s) 53, 920
Eco52I CGGCCG 1 cut(s) 516
Eco57I CTGAAG 2 cut(s) 726, 750
Eco88I CYCGRG 1 cut(s) 843
EcoRII CCWGG 3 cut(s) 207, 285, 759
EcoT14I CCWWGG 2 cut(s) 53, 920
ErhI CCWWGG 2 cut(s) 53, 920
FaeI CATG 6 cut(s) 362, 740, 800, 861, 904, 924
FaqI GGGAC 1 cut(s) 269
FatI CATG 6 cut(s) 358, 736, 796, 857, 900, 920
FbaI TGATCA 1 cut(s) 1068
Fnu4HI GCNGC 2 cut(s) 330, 333
Fsp4HI GCNGC 2 cut(s) 330, 333
FspBI CTAG 5 cut(s) 443, 533, 627, 719, 1112
GluI GCNGC 2 cut(s) 330, 333
GsaI CCCAGC 2 cut(s) 768, 940
GsuI CTGGAG 1 cut(s) 269
HapII CCGG 3 cut(s) 96, 126, 515
HgaI GACGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 6 cut(s) 362, 740, 800, 861, 904, 924
HinfI GANTC 4 cut(s) 89, 116, 257, 904
HpaII CCGG 3 cut(s) 96, 126, 515
HphI GGTGA 6 cut(s) 365, 560, 662, 1036, 1078, 1088
Hpy166II GTNNAC 2 cut(s) 636, 653
Hpy188I TCNGA 1 cut(s) 706
Hpy188III TCNNGA 6 cut(s) 47, 359, 398, 671, 737, 1112
Hpy8I GTNNAC 2 cut(s) 636, 653
HpyAV CCTTC 2 cut(s) 157, 692
HpyCH4III ACNGT 1 cut(s) 830
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 2 cut(s) 26, 168
HpyF10VI GCNNNNNNNGC 4 cut(s) 422, 538, 603, 761
HpyF3I CTNAG 2 cut(s) 347, 659
HpySE526I ACGT 1 cut(s) 537
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 6 cut(s) 362, 740, 800, 861, 904, 924
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 1068
Kzo9I GATC 2 cut(s) 872, 1068
LmnI GCTCC 5 cut(s) 230, 288, 603, 752, 859
LweI GCATC 2 cut(s) 145, 700
MaeI CTAG 5 cut(s) 443, 533, 627, 719, 1112
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 86, 800
MalI GATC 2 cut(s) 874, 1070
MboI GATC 2 cut(s) 872, 1068
MboII GAAGA 6 cut(s) 233, 371, 677, 680, 719, 966
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 2 cut(s) 757, 856
MlsI TGGCCA 3 cut(s) 317, 811, 957
MluNI TGGCCA 3 cut(s) 317, 811, 957
MlyI GAGTC 2 cut(s) 83, 251
MmeI TCCRAC 2 cut(s) 146, 595
MnlI CCTC 6 cut(s) 500, 707, 733, 839, 1057, 1057
Mox20I TGGCCA 3 cut(s) 317, 811, 957
MroNI GCCGGC 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 1035
MscI TGGCCA 3 cut(s) 317, 811, 957
MseI TTAA 6 cut(s) 162, 197, 243, 642, 785, 822
MslI CAYNNNNRTG 2 cut(s) 14, 141
Msp20I TGGCCA 3 cut(s) 317, 811, 957
MspI CCGG 3 cut(s) 96, 126, 515
MspR9I CCNGG 4 cut(s) 97, 209, 287, 761
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 438
MvaI CCWGG 3 cut(s) 209, 287, 761
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 4 cut(s) 422, 538, 603, 761
NaeI GCCGGC 1 cut(s) 516
NciI CCSGG 1 cut(s) 97
NcoI CCATGG 1 cut(s) 920
NdeII GATC 2 cut(s) 872, 1068
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 6 cut(s) 362, 740, 800, 861, 904, 924
NlaIV GGNNCC 2 cut(s) 605, 874
NmeAIII GCCGAG 3 cut(s) 526, 678, 1087
NmuCI GTSAC 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 843
PagI TCATGA 2 cut(s) 358, 736
PctI GAATGC 1 cut(s) 438
PdiI GCCGGC 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 1035
PfeI GAWTC 2 cut(s) 116, 904
PkrI GCNGC 2 cut(s) 331, 334
PleI GAGTC 2 cut(s) 83, 251
PpsI GAGTC 2 cut(s) 83, 251
Psp6I CCWGG 3 cut(s) 207, 285, 759
PspFI CCCAGC 2 cut(s) 764, 936
PspGI CCWGG 3 cut(s) 207, 285, 759
PspN4I GGNNCC 2 cut(s) 605, 874
PspXI VCTCGAGB 1 cut(s) 843
PsuI RGATCY 1 cut(s) 872
RseI CAYNNNNRTG 2 cut(s) 14, 141
SaqAI TTAA 6 cut(s) 162, 197, 243, 642, 785, 822
SatI GCNGC 2 cut(s) 330, 333
Sau3AI GATC 2 cut(s) 872, 1068
SchI GAGTC 2 cut(s) 83, 251
ScrFI CCNGG 4 cut(s) 97, 209, 287, 761
SduI GDGCHC 2 cut(s) 757, 856
SetI ASST 9 cut(s) 249, 291, 511, 534, 540, 579, 684, 1049, 1068
SfaNI GCATC 2 cut(s) 145, 700
Sfr274I CTCGAG 1 cut(s) 843
SlaI CTCGAG 1 cut(s) 843
SmiMI CAYNNNNRTG 2 cut(s) 14, 141
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
SpeI ACTAGT 1 cut(s) 718
SsiI CCGC 7 cut(s) 93, 330, 333, 383, 597, 750, 1099
SspMI CTAG 5 cut(s) 443, 533, 627, 719, 1112
StyD4I CCNGG 4 cut(s) 95, 207, 285, 759
StyI CCWWGG 2 cut(s) 53, 920
TaaI ACNGT 1 cut(s) 830
TaiI ACGT 1 cut(s) 540
TaqI TCGA 1 cut(s) 844
TauI GCSGC 2 cut(s) 332, 335
TfiI GAWTC 2 cut(s) 116, 904
Tru1I TTAA 6 cut(s) 162, 197, 243, 642, 785, 822
Tru9I TTAA 6 cut(s) 162, 197, 243, 642, 785, 822
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 7 cut(s) 204, 347, 423, 599, 725, 917, 1066
TspGWI ACGGA 1 cut(s) 885
TspRI CASTG 1 cut(s) 91
XapI RAATTY 2 cut(s) 368, 1073
XbaI TCTAGA 1 cut(s) 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 549
XhoI CTCGAG 1 cut(s) 843
XmnI GAANNNNTTC 1 cut(s) 1035
XspI CTAG 5 cut(s) 443, 533, 627, 719, 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.