Rw5G043010

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000160
Physical Location & Seq
Forward (+)
75198774 .. 75199574
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043010.1

Sequence Viewer

Length: 693 bp
ATGGAGAACCTGTGCCTAACTCTGTATTTTTCAGCGTGCAAGTTGCGGCACTACATGTTATCCTTTACCACCTGCATTATCGCTCAAACTGATTTGGTCAAATACATGTTGTCACGGCCTATCTTGAGAGGTCGCATTGGCAAATGGGTATTGGCTCTCTCAGAATTTTCTCTCCAATATGTACCTCAGAAAGTTGTCAAGGGGCAGGCCATCGCGGATTTTCTAGCACATCATCCTACGTTAGAGATACCAGCACTGAAGGAATTAGAGATAGCAACTGACACACTGGTTGGTGCAGGGATTGTTTTGGAAAACCCAACCGGTGACCGTTTCTCTTATTCTTTCAAACTAGAGTTCAAATGTACTAATAATCAGGCCGAATATGAAGCTCTTATTATTAGACTCGAGGTCTTATTGGAAATGGGCGTAAGGGACGTTCAGATTCGCGGCGATTCTCAGCTTGTTATAAACCAGCTCCAGGAAAAGTATCGATGTGTAAGTTGGTTGCTTGTACCATATCTGAATCGAGCCATCGAGCGTCTGGACCAATTTGACGACGTCGATCTGGAGCATATCCCCCGCGAGCGCAACTTTGCAGCTAATGAGCTCGCTCAGCTGGCCACAGGCATCACATTGAAGTATGGAGTGCGCATGCGCATTTTGAAAGTTGAGCGTCGCACATTACCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

230

Amino Acids

26.45

Weight (kDa)

7.63

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 97 - 206 1.5e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AarI CACCTGC 1 cut(s) 80
AatII GACGTC 1 cut(s) 561
Acc16I TGCGCA 2 cut(s) 650, 656
Acc36I ACCTGC 1 cut(s) 80
AccII CGCG 3 cut(s) 215, 447, 582
AciI CCGC 4 cut(s) 46, 215, 447, 580
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 558
AfaI GTAC 3 cut(s) 183, 364, 513
AfiI CCNNNNNNNGG 1 cut(s) 478
AflIII ACRYGT 2 cut(s) 54, 105
AgeI ACCGGT 1 cut(s) 320
AgsI TTSAA 4 cut(s) 346, 358, 637, 664
AhdI GACNNNNNGTC 1 cut(s) 407
AjnI CCWGG 1 cut(s) 477
AluBI AGCT 6 cut(s) 389, 460, 475, 599, 607, 616
AluI AGCT 6 cut(s) 389, 460, 475, 599, 607, 616
Alw21I GWGCWC 1 cut(s) 609
Ama87I CYCGRG 1 cut(s) 404
AoxI GGCC 4 cut(s) 116, 207, 375, 618
ApeKI GCWGC 1 cut(s) 596
ApoI RAATTY 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 320
AspLEI GCGC 3 cut(s) 588, 651, 657
AspS9I GGNCC 1 cut(s) 544
AsuHPI GGTGA 1 cut(s) 335
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 620
BanII GRGCYC 1 cut(s) 609
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 608
BccI CCATC 2 cut(s) 218, 539
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 479
BfaI CTAG 2 cut(s) 224, 350
BfuAI ACCTGC 1 cut(s) 80
BisI GCNGC 3 cut(s) 47, 448, 597
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 3 cut(s) 48, 449, 598
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 544
BmeRI GACNNNNNGTC 1 cut(s) 407
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 544
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 1 cut(s) 636
BpmI CTGGAG 2 cut(s) 461, 587
Bpu1102I GCTNAGC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 145
Bsa29I ATCGAT 1 cut(s) 490
BsaHI GRCGYC 1 cut(s) 558
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 479
BseCI ATCGAT 1 cut(s) 490
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 4 cut(s) 174, 200, 470, 626
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 608
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 3 cut(s) 215, 447, 582
BshFI GGCC 4 cut(s) 118, 209, 377, 620
BshTI ACCGGT 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 609
BsiHKCI CYCGRG 1 cut(s) 404
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 478
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 4 cut(s) 118, 209, 377, 620
BsoBI CYCGRG 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 609
Bsp143I GATC 1 cut(s) 562
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 4 cut(s) 46, 215, 447, 580
BspANI GGCC 4 cut(s) 118, 209, 377, 620
BspCNI CTCAG 4 cut(s) 173, 199, 469, 625
BspDI ATCGAT 1 cut(s) 490
BspFNI CGCG 3 cut(s) 215, 447, 582
BspHI TCATGA 1 cut(s) 689
BspMI ACCTGC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 320
BssMI GATC 1 cut(s) 562
BssNI GRCGYC 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 558
BstC8I GCNNGC 6 cut(s) 37, 207, 584, 609, 618, 653
BstDEI CTNAG 4 cut(s) 160, 186, 456, 612
BstEII GGTNACC 1 cut(s) 323
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 3 cut(s) 215, 447, 582
BstHHI GCGC 3 cut(s) 588, 651, 657
BstKTI GATC 1 cut(s) 565
BstMBI GATC 1 cut(s) 562
BstMWI GCNNNNNNNGC 2 cut(s) 613, 617
BstNI CCWGG 1 cut(s) 479
BstNSI RCATGY 3 cut(s) 58, 109, 655
BstPI GGTNACC 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 477
BstUI CGCG 3 cut(s) 215, 447, 582
BstV1I GCAGC 1 cut(s) 608
Bsu15I ATCGAT 1 cut(s) 490
BsuRI GGCC 4 cut(s) 118, 209, 377, 620
BsuTUI ATCGAT 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 196
BtsCI GGATG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 254, 284
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 6 cut(s) 37, 207, 584, 609, 618, 653
CciI TCATGA 1 cut(s) 689
CfoI GCGC 3 cut(s) 588, 651, 657
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 544
ClaI ATCGAT 1 cut(s) 490
CseI GACGC 2 cut(s) 527, 662
Csp6I GTAC 3 cut(s) 182, 363, 512
CspAI ACCGGT 1 cut(s) 320
CviAII CATG 4 cut(s) 55, 106, 652, 690
CviQI GTAC 3 cut(s) 182, 363, 512
DdeI CTNAG 4 cut(s) 160, 186, 456, 612
DpnI GATC 1 cut(s) 564
DpnII GATC 1 cut(s) 562
DriI GACNNNNNGTC 1 cut(s) 407
EaeI YGGCCR 1 cut(s) 618
Eam1105I GACNNNNNGTC 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 607
Eco24I GRGCYC 1 cut(s) 609
Eco47I GGWCC 1 cut(s) 544
Eco53kI GAGCTC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 404
Eco91I GGTNACC 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 607
EcoO65I GGTNACC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 609
FaeI CATG 4 cut(s) 58, 109, 655, 693
FaqI GGGAC 1 cut(s) 446
FatI CATG 4 cut(s) 54, 105, 651, 689
FauI CCCGC 1 cut(s) 587
Fnu4HI GCNGC 3 cut(s) 47, 448, 597
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 609
Fsp4HI GCNGC 3 cut(s) 47, 448, 597
FspAI RTGCGCAY 2 cut(s) 650, 656
FspBI CTAG 2 cut(s) 224, 350
FspI TGCGCA 2 cut(s) 650, 656
GlaI GCGC 3 cut(s) 587, 650, 656
GluI GCNGC 3 cut(s) 47, 448, 597
GsuI CTGGAG 2 cut(s) 461, 587
HaeIII GGCC 4 cut(s) 118, 209, 377, 620
HapII CCGG 1 cut(s) 321
HgaI GACGC 2 cut(s) 527, 662
HhaI GCGC 3 cut(s) 588, 651, 657
Hin1I GRCGYC 1 cut(s) 558
Hin1II CATG 4 cut(s) 58, 109, 655, 693
Hin6I GCGC 3 cut(s) 586, 649, 655
HinP1I GCGC 3 cut(s) 586, 649, 655
HinfI GANTC 4 cut(s) 402, 442, 452, 523
HpaII CCGG 1 cut(s) 321
HphI GGTGA 1 cut(s) 335
Hpy188I TCNGA 4 cut(s) 163, 189, 441, 522
Hpy188III TCNNGA 4 cut(s) 124, 542, 566, 690
Hpy99I CGWCG 3 cut(s) 560, 563, 678
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 3 cut(s) 239, 435, 558
HpyCH4V TGCA 4 cut(s) 39, 75, 296, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 613, 617
HpyF3I CTNAG 4 cut(s) 160, 186, 456, 612
HpySE526I ACGT 3 cut(s) 239, 435, 558
Hsp92I GRCGYC 1 cut(s) 558
Hsp92II CATG 4 cut(s) 58, 109, 655, 693
HspAI GCGC 3 cut(s) 586, 649, 655
Kzo9I GATC 1 cut(s) 562
LmnI GCTCC 2 cut(s) 480, 568
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 1 cut(s) 636
MaeI CTAG 2 cut(s) 224, 350
MaeII ACGT 3 cut(s) 239, 435, 558
MaeIII GTNAC 2 cut(s) 111, 323
MalI GATC 1 cut(s) 564
MboI GATC 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 609
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 3 cut(s) 164, 263, 548
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 1 cut(s) 396
MnlI CCTC 3 cut(s) 122, 195, 400
Mox20I TGGCCA 1 cut(s) 620
MscI TGGCCA 1 cut(s) 620
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 616
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 479
MvaI CCWGG 1 cut(s) 479
MvnI CGCG 3 cut(s) 215, 447, 582
MwoI GCNNNNNNNGC 2 cut(s) 613, 617
NdeII GATC 1 cut(s) 562
NlaIII CATG 4 cut(s) 58, 109, 655, 693
NmuCI GTSAC 2 cut(s) 111, 323
NsbI TGCGCA 2 cut(s) 650, 656
NspI RCATGY 3 cut(s) 58, 109, 655
PaeI GCATGC 1 cut(s) 655
PaeR7I CTCGAG 1 cut(s) 404
PagI TCATGA 1 cut(s) 689
PaqCI CACCTGC 1 cut(s) 80
PciI ACATGT 2 cut(s) 54, 105
PfeI GAWTC 3 cut(s) 442, 452, 523
PflFI GACNNNGTC 1 cut(s) 557
PfoI TCCNGGA 1 cut(s) 477
PinAI ACCGGT 1 cut(s) 320
PkrI GCNGC 3 cut(s) 48, 449, 598
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PscI ACATGT 2 cut(s) 54, 105
PsiI TTATAA 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 477
PspEI GGTNACC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 477
PspPI GGNCC 1 cut(s) 544
PspXI VCTCGAGB 1 cut(s) 404
PsrI GAACNNNNNNTAC 2 cut(s) 420, 452
PsyI GACNNNGTC 1 cut(s) 557
PvuII CAGCTG 1 cut(s) 616
RsaI GTAC 3 cut(s) 183, 364, 513
RsaNI GTAC 3 cut(s) 182, 363, 512
SacI GAGCTC 1 cut(s) 609
SatI GCNGC 3 cut(s) 47, 448, 597
Sau3AI GATC 1 cut(s) 562
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 396
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 1 cut(s) 609
SfaNI GCATC 1 cut(s) 636
Sfr274I CTCGAG 1 cut(s) 404
SinI GGWCC 1 cut(s) 544
SlaI CTCGAG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 124, 404
SmoI CTYRAG 2 cut(s) 124, 404
SphI GCATGC 1 cut(s) 655
Sse9I AATT 3 cut(s) 164, 263, 548
SsiI CCGC 4 cut(s) 46, 215, 447, 580
SspMI CTAG 2 cut(s) 224, 350
SstI GAGCTC 1 cut(s) 609
StyD4I CCNGG 1 cut(s) 477
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 3 cut(s) 242, 438, 561
TaqI TCGA 5 cut(s) 405, 490, 526, 534, 561
TasI AATT 3 cut(s) 164, 263, 548
TatI WGTACW 1 cut(s) 362
TauI GCSGC 2 cut(s) 49, 450
TfiI GAWTC 3 cut(s) 442, 452, 523
TscAI CASTG 2 cut(s) 261, 291
TseFI GTSAC 2 cut(s) 111, 323
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 2 cut(s) 111, 323
TspDTI ATGAA 2 cut(s) 399, 678
TspRI CASTG 2 cut(s) 261, 291
Tth111I GACNNNGTC 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 1 cut(s) 164
XceI RCATGY 3 cut(s) 58, 109, 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XhoI CTCGAG 1 cut(s) 404
XspI CTAG 2 cut(s) 224, 350
ZraI GACGTC 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.