Rw4G017000

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000160
Physical Location & Seq
Reverse (-)
38464954 .. 38465820
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G017000.1

Sequence Viewer

Length: 867 bp
ATGGAAAAGCTGTGTCTAACCCTGTATTTTTCAGCGTGCAAATTACGACACTACATGTTATCCTTTACTACTTGCATCATCGCTCAGACCGATCTGGTCAAATATATGTTGTCCCGGCCTATCTTGCGAGGCCGCATTGGCAAATGGGTATTGGCGCTTTCAGAGTTTTCGCTCCAATATGTACCCCAGAAGGCTGTGAAAGGGCAAGCGATCGCTGATTTTCTGGCACACCATCCTCCGCTAGAAATACATGTACTAAAGGAGTTAGAGATTGCCTGCAACGCTACGACTCGACCAGATAAAACGTGCATCCCTGAGTACGAGCTCTGGTATCAGGCTACAATCTTTCTACAGCCCTGGGTGTTATTTTTTGATGGTTCCAGAACGGACGCTATGGCTGGCGCGGGGATTGTTTTGGAGAACCCGGCAGGTGATCGTTTCTCTTATTCTTTCCAGCTTACATTCCAGTGTACTAATAATCAGGCCGAATATGAGGCCCTCATCATTGGACTAGAAGTCTTGTTGGAAATGGGCGTCCGGGACATTCAGATTCGCGGTGACTCCCAGCTCGTTATCAATCAGCTTCTGGGAAAATATCGCTGTACGAGTTGGCTGCTCATCCCATACCTGAATCGCGCAATTGAGCTCCTGGACCAATTTACAGACGTTGATATGGAGCATATACCACGTGAACGTAACTTTGCTGCTAATGAGCTCGCTCAGTTGGCTACAGGCATCACCTTGAAATACGGAGTACGCGAGCGCATTCTGAAAGTTGAGCGTCGCACACTACCTTCGTGGCTTGCTCGACCTGATCCTCCAGATGATCCCGTGGTCGCGGTACTAGAGCCCATTGACGTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

288

Amino Acids

32.91

Weight (kDa)

5.49

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 121 - 217 2.8e-06 RNase H
RVT_3 PF13456 124 - 242 1e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
AatII GACGTC 1 cut(s) 861
Acc36I ACCTGC 1 cut(s) 419
AccII CGCG 5 cut(s) 404, 555, 636, 759, 839
AciI CCGC 5 cut(s) 133, 239, 404, 555, 839
AclWI GGATC 2 cut(s) 809, 821
AcvI CACGTG 1 cut(s) 689
AcyI GRCGYC 2 cut(s) 534, 858
AfaI GTAC 7 cut(s) 183, 255, 320, 472, 604, 756, 843
AflIII ACRYGT 2 cut(s) 54, 250
AgsI TTSAA 1 cut(s) 745
AhdI GACNNNNNGTC 1 cut(s) 515
AjnI CCWGG 2 cut(s) 356, 648
AluBI AGCT 7 cut(s) 10, 325, 457, 568, 583, 646, 715
AluI AGCT 7 cut(s) 10, 325, 457, 568, 583, 646, 715
Alw21I GWGCWC 3 cut(s) 327, 648, 717
AlwI GGATC 2 cut(s) 809, 821
AlwNI CAGNNNCTG 1 cut(s) 586
AoxI GGCC 4 cut(s) 116, 130, 483, 495
ApeKI GCWGC 2 cut(s) 613, 704
AsiSI GCGATCGC 1 cut(s) 213
AspLEI GCGC 4 cut(s) 157, 404, 638, 765
AspS9I GGNCC 2 cut(s) 496, 652
AsuC2I CCSGG 3 cut(s) 115, 425, 539
AsuHPI GGTGA 3 cut(s) 443, 569, 730
AvaII GGWCC 1 cut(s) 652
BanII GRGCYC 4 cut(s) 327, 648, 717, 852
BbrPI CACGTG 1 cut(s) 689
Bbv12I GWGCWC 3 cut(s) 327, 648, 717
BbvI GCAGC 2 cut(s) 600, 691
BccI CCATC 2 cut(s) 240, 368
BcgI CGANNNNNNTGC 2 cut(s) 595, 629
BciT130I CCWGG 2 cut(s) 358, 650
BcnI CCSGG 3 cut(s) 115, 425, 539
BfaI CTAG 3 cut(s) 242, 512, 845
BfmI CTRYAG 2 cut(s) 350, 729
BfoI RGCGCY 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 3 cut(s) 133, 614, 705
BlsI GCNGC 3 cut(s) 134, 615, 706
Bme1390I CCNGG 5 cut(s) 115, 358, 425, 539, 650
Bme18I GGWCC 1 cut(s) 652
BmeRI GACNNNNNGTC 1 cut(s) 515
BmgT120I GGNCC 2 cut(s) 496, 652
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 5 cut(s) 115, 358, 425, 539, 650
BmsI GCATC 3 cut(s) 84, 318, 744
BpmI CTGGAG 1 cut(s) 804
BpuMI CCSGG 3 cut(s) 115, 425, 539
BsaAI YACGTR 1 cut(s) 689
BsaHI GRCGYC 2 cut(s) 534, 858
BsaJI CCNNGG 3 cut(s) 356, 357, 831
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 2 cut(s) 358, 650
BseDI CCNNGG 3 cut(s) 356, 357, 831
BseGI GGATG 3 cut(s) 232, 309, 618
BseMII CTCAG 3 cut(s) 98, 306, 734
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 2 cut(s) 600, 691
BseYI CCCAGC 1 cut(s) 564
Bsh1236I CGCG 5 cut(s) 404, 555, 636, 759, 839
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 4 cut(s) 118, 132, 485, 497
BsiEI CGRYCG 1 cut(s) 213
BsiHKAI GWGCWC 3 cut(s) 327, 648, 717
BsiSI CCGG 3 cut(s) 115, 425, 538
BslFI GGGAC 2 cut(s) 97, 554
BsmFI GGGAC 2 cut(s) 97, 554
BsmI GAATGC 1 cut(s) 765
BsnI GGCC 4 cut(s) 118, 132, 485, 497
Bsp1286I GDGCHC 4 cut(s) 327, 648, 717, 852
Bsp143I GATC 5 cut(s) 91, 210, 433, 814, 826
BspACI CCGC 5 cut(s) 133, 239, 404, 555, 839
BspANI GGCC 4 cut(s) 118, 132, 485, 497
BspCNI CTCAG 3 cut(s) 97, 307, 733
BspFNI CGCG 5 cut(s) 404, 555, 636, 759, 839
BspLI GGNNCC 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 419
BspPI GGATC 2 cut(s) 809, 821
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 3 cut(s) 356, 357, 831
BssMI GATC 5 cut(s) 91, 210, 433, 814, 826
BssNI GRCGYC 2 cut(s) 534, 858
Bst2UI CCWGG 2 cut(s) 358, 650
BstACI GRCGYC 2 cut(s) 534, 858
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 7 cut(s) 37, 207, 277, 400, 717, 761, 804
BstDEI CTNAG 3 cut(s) 84, 315, 720
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 3 cut(s) 232, 309, 618
BstFNI CGCG 5 cut(s) 404, 555, 636, 759, 839
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 4 cut(s) 157, 404, 638, 765
BstKTI GATC 5 cut(s) 94, 213, 436, 817, 829
BstMBI GATC 5 cut(s) 91, 210, 433, 814, 826
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 4 cut(s) 124, 138, 281, 725
BstNI CCWGG 2 cut(s) 358, 650
BstNSI RCATGY 2 cut(s) 58, 254
BstSCI CCNGG 5 cut(s) 113, 356, 423, 537, 648
BstSFI CTRYAG 2 cut(s) 350, 729
BstUI CGCG 5 cut(s) 404, 555, 636, 759, 839
BstV1I GCAGC 2 cut(s) 600, 691
BsuRI GGCC 4 cut(s) 118, 132, 485, 497
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 3 cut(s) 232, 309, 618
BtsIMutI CAGTG 1 cut(s) 473
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 7 cut(s) 37, 207, 277, 400, 717, 761, 804
CaiI CAGNNNCTG 1 cut(s) 586
CfoI GCGC 4 cut(s) 157, 404, 638, 765
Cfr13I GGNCC 2 cut(s) 496, 652
CseI GACGC 3 cut(s) 398, 523, 770
Csp6I GTAC 7 cut(s) 182, 254, 319, 471, 603, 755, 842
CviAII CATG 2 cut(s) 55, 251
CviQI GTAC 7 cut(s) 182, 254, 319, 471, 603, 755, 842
DdeI CTNAG 3 cut(s) 84, 315, 720
DpnI GATC 5 cut(s) 93, 212, 435, 816, 828
DpnII GATC 5 cut(s) 91, 210, 433, 814, 826
DriI GACNNNNNGTC 1 cut(s) 515
Eam1105I GACNNNNNGTC 1 cut(s) 515
Ecl136II GAGCTC 3 cut(s) 325, 646, 715
Eco24I GRGCYC 4 cut(s) 327, 648, 717, 852
Eco47I GGWCC 1 cut(s) 652
Eco53kI GAGCTC 3 cut(s) 325, 646, 715
Eco72I CACGTG 1 cut(s) 689
EcoICRI GAGCTC 3 cut(s) 325, 646, 715
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 356, 648
EcoT38I GRGCYC 4 cut(s) 327, 648, 717, 852
FaeI CATG 2 cut(s) 58, 254
FaqI GGGAC 2 cut(s) 97, 554
FatI CATG 2 cut(s) 54, 250
FauI CCCGC 1 cut(s) 397
Fnu4HI GCNGC 3 cut(s) 133, 614, 705
FokI GGATG 3 cut(s) 219, 296, 605
FriOI GRGCYC 4 cut(s) 327, 648, 717, 852
Fsp4HI GCNGC 3 cut(s) 133, 614, 705
FspBI CTAG 3 cut(s) 242, 512, 845
GlaI GCGC 4 cut(s) 156, 403, 637, 764
GluI GCNGC 3 cut(s) 133, 614, 705
GsaI CCCAGC 1 cut(s) 568
GsuI CTGGAG 1 cut(s) 804
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 4 cut(s) 118, 132, 485, 497
HapII CCGG 3 cut(s) 115, 425, 538
HgaI GACGC 3 cut(s) 398, 523, 770
HhaI GCGC 4 cut(s) 157, 404, 638, 765
Hin1I GRCGYC 2 cut(s) 534, 858
Hin1II CATG 2 cut(s) 58, 254
Hin6I GCGC 4 cut(s) 155, 402, 636, 763
HinP1I GCGC 4 cut(s) 155, 402, 636, 763
HinfI GANTC 4 cut(s) 289, 550, 560, 631
HpaII CCGG 3 cut(s) 115, 425, 538
HphI GGTGA 3 cut(s) 443, 569, 730
Hpy166II GTNNAC 2 cut(s) 471, 692
Hpy188I TCNGA 4 cut(s) 87, 163, 549, 771
Hpy188III TCNNGA 2 cut(s) 381, 821
Hpy8I GTNNAC 2 cut(s) 471, 692
Hpy99I CGWCG 2 cut(s) 786, 863
HpyAV CCTTC 2 cut(s) 184, 804
HpyCH4IV ACGT 5 cut(s) 305, 666, 688, 694, 858
HpyCH4V TGCA 4 cut(s) 39, 75, 279, 309
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 138, 281, 725
HpyF3I CTNAG 3 cut(s) 84, 315, 720
HpySE526I ACGT 5 cut(s) 305, 666, 688, 694, 858
Hsp92I GRCGYC 2 cut(s) 534, 858
Hsp92II CATG 2 cut(s) 58, 254
HspAI GCGC 4 cut(s) 155, 402, 636, 763
Kzo9I GATC 5 cut(s) 91, 210, 433, 814, 826
LmnI GCTCC 3 cut(s) 177, 651, 676
Lsp1109I GCAGC 2 cut(s) 600, 691
LweI GCATC 3 cut(s) 84, 318, 744
MaeI CTAG 3 cut(s) 242, 512, 845
MaeII ACGT 5 cut(s) 305, 666, 688, 694, 858
MaeIII GTNAC 2 cut(s) 557, 695
MalI GATC 5 cut(s) 93, 212, 435, 816, 828
MboI GATC 5 cut(s) 91, 210, 433, 814, 826
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 4 cut(s) 327, 648, 717, 852
MluCI AATT 3 cut(s) 41, 639, 656
MlyI GAGTC 2 cut(s) 283, 554
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 5 cut(s) 122, 246, 487, 509, 828
MslI CAYNNNNRTG 1 cut(s) 466
MspI CCGG 3 cut(s) 115, 425, 538
MspR9I CCNGG 5 cut(s) 115, 358, 425, 539, 650
MunI CAATTG 1 cut(s) 639
Mva1269I GAATGC 1 cut(s) 765
MvaI CCWGG 2 cut(s) 358, 650
MvnI CGCG 5 cut(s) 404, 555, 636, 759, 839
MwoI GCNNNNNNNGC 4 cut(s) 124, 138, 281, 725
NciI CCSGG 3 cut(s) 115, 425, 539
NdeII GATC 5 cut(s) 91, 210, 433, 814, 826
NlaIII CATG 2 cut(s) 58, 254
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 1 cut(s) 557
NspI RCATGY 2 cut(s) 58, 254
PaqCI CACCTGC 1 cut(s) 419
PasI CCCWGGG 1 cut(s) 357
PciI ACATGT 2 cut(s) 54, 250
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 756
PctI GAATGC 1 cut(s) 765
PfeI GAWTC 2 cut(s) 550, 631
PfoI TCCNGGA 2 cut(s) 537, 648
PkrI GCNGC 3 cut(s) 134, 615, 706
Ple19I CGATCG 1 cut(s) 213
PleI GAGTC 2 cut(s) 283, 554
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
PpsI GAGTC 2 cut(s) 283, 554
Ppu21I YACGTR 1 cut(s) 689
PscI ACATGT 2 cut(s) 54, 250
Psp124BI GAGCTC 3 cut(s) 327, 648, 717
Psp6I CCWGG 2 cut(s) 356, 648
PspCI CACGTG 1 cut(s) 689
PspFI CCCAGC 1 cut(s) 564
PspGI CCWGG 2 cut(s) 356, 648
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 496, 652
PstNI CAGNNNCTG 1 cut(s) 586
PvuI CGATCG 1 cut(s) 213
RgaI GCGATCGC 1 cut(s) 213
RsaI GTAC 7 cut(s) 183, 255, 320, 472, 604, 756, 843
RsaNI GTAC 7 cut(s) 182, 254, 319, 471, 603, 755, 842
RseI CAYNNNNRTG 1 cut(s) 466
SacI GAGCTC 3 cut(s) 327, 648, 717
SatI GCNGC 3 cut(s) 133, 614, 705
Sau3AI GATC 5 cut(s) 91, 210, 433, 814, 826
Sau96I GGNCC 2 cut(s) 496, 652
SchI GAGTC 2 cut(s) 283, 554
ScrFI CCNGG 5 cut(s) 115, 358, 425, 539, 650
SduI GDGCHC 4 cut(s) 327, 648, 717, 852
SfaAI GCGATCGC 1 cut(s) 213
SfaNI GCATC 3 cut(s) 84, 318, 744
SfcI CTRYAG 2 cut(s) 350, 729
SgfI GCGATCGC 1 cut(s) 213
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 1 cut(s) 466
Sse9I AATT 3 cut(s) 41, 639, 656
SsiI CCGC 5 cut(s) 133, 239, 404, 555, 839
SspMI CTAG 3 cut(s) 242, 512, 845
SstI GAGCTC 3 cut(s) 327, 648, 717
StyD4I CCNGG 5 cut(s) 113, 356, 423, 537, 648
TaiI ACGT 5 cut(s) 308, 669, 691, 697, 861
TaqI TCGA 3 cut(s) 292, 808, 861
TaqII GACCGA 1 cut(s) 104
TasI AATT 3 cut(s) 41, 639, 656
TatI WGTACW 2 cut(s) 253, 470
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 2 cut(s) 550, 631
TscAI CASTG 1 cut(s) 473
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 2 cut(s) 613, 704
Tsp45I GTSAC 1 cut(s) 557
TspGWI ACGGA 2 cut(s) 401, 765
TspRI CASTG 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 652
XceI RCATGY 2 cut(s) 58, 254
XspI CTAG 3 cut(s) 242, 512, 845
ZraI GACGTC 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.