Rroxscaffold_4G00331810

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000160
Physical Location & Seq
Forward (+)
65819838 .. 65822285
2448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331810.1

Sequence Viewer

Length: 774 bp
ATGCATAAGTCGGGAATCATCGGGGTAGCCAAGTATAATCGGTGGCTATCCAATGTTGTTCCAGTTCAAAAGAAGAATGGCAAAATGAGGGTGTGCGTGGACTACCACGATCTCAATAAGGCCACTCCCAAAGACGTTTACCCCATGCCGGTAGCGGACATGTTGGTGGACGCGGTAGATGGTCATGAACTTCTCTCTTTTATGGACGGAACTGCCGGTTACCATCAAATTCCGGTGGCGGAAGAAGATAGACACAAAACTGCTTTTAGGTGCCCGGGTTTCGTGGGAGTTTTCAAATACGTGGTCATACCATTTGGTTTGAAGAATGCGGGAGCCACGTACCGGCGAGCAATGAACCTAATCTTTCATGACATCTTAGGGAAGATTCTAGAGGTTTACATAGATGACGTAGTCATTAAATCCAGTGCACTGTGTAATCACATTGCGGATTTGCGAAAAGTTTTCGAAGGTATGCGGCGTCACAAGCTAAAGATGAACCCCGAGAAATGTGTGTTTGGGGTTCAAGCGGTGATTTTTTGGGATTCATTGTACATCGGAGAGGCATTGAGGTATCGGAAGATAAAGCTAAAGCGATTATCAATGCCTCGCCACCGTGAACAAAGAAGGAGTTGCAAAGGTTGTTGGGAAAAATCAATTTCCTACGACAATTTATTTCCAATTCCTCCAAAGAAGATTCAGCATTTTTTCTACTCTACTAAAGCTGCAAGGAAAAATAGAATTTGTGTGGGAAGTGAAGCATCAAGAGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

257

Amino Acids

29.49

Weight (kDa)

9.75

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 22 - 174 6.3e-29 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 270
AccII CGCG 1 cut(s) 173
AciI CCGC 7 cut(s) 155, 173, 239, 329, 446, 475, 527
AcsI RAATTY 2 cut(s) 228, 738
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 2 cut(s) 341, 551
AfiI CCNNNNNNNGG 2 cut(s) 148, 342
AflIII ACRYGT 1 cut(s) 159
AgsI TTSAA 4 cut(s) 68, 295, 322, 524
AluBI AGCT 3 cut(s) 487, 586, 722
AluI AGCT 3 cut(s) 487, 586, 722
Alw21I GWGCWC 1 cut(s) 430
Alw44I GTGCAC 1 cut(s) 426
Ama87I CYCGRG 2 cut(s) 274, 500
AoxI GGCC 1 cut(s) 120
ApaLI GTGCAC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 722
ApoI RAATTY 2 cut(s) 228, 738
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AsuC2I CCSGG 2 cut(s) 275, 276
AsuHPI GGTGA 1 cut(s) 541
AsuII TTCGAA 1 cut(s) 465
AvaI CYCGRG 2 cut(s) 274, 500
BaeGI GKGCMC 2 cut(s) 275, 430
BanI GGYRCC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 709
BccI CCATC 2 cut(s) 173, 231
BcnI CCSGG 2 cut(s) 275, 276
BfaI CTAG 1 cut(s) 389
BisI GCNGC 2 cut(s) 476, 723
BlsI GCNGC 2 cut(s) 477, 724
Bme1390I CCNGG 2 cut(s) 275, 276
BmeT110I CYCGRG 2 cut(s) 274, 500
BmiI GGNNCC 2 cut(s) 272, 334
BmrFI CCNGG 2 cut(s) 275, 276
BmsI GCATC 1 cut(s) 767
Bpu14I TTCGAA 1 cut(s) 465
BpuMI CCSGG 2 cut(s) 275, 276
BsaAI YACGTR 2 cut(s) 301, 339
BsaHI GRCGYC 1 cut(s) 478
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 342
Bse118I RCCGGY 3 cut(s) 148, 215, 342
Bse1I ACTGG 2 cut(s) 62, 423
Bse3DI GCAATG 2 cut(s) 357, 441
BseDI CCNNGG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 148, 342
BseMI GCAATG 2 cut(s) 357, 441
BseNI ACTGG 2 cut(s) 62, 423
BseSI GKGCMC 2 cut(s) 275, 430
BseXI GCAGC 1 cut(s) 709
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 2 cut(s) 274, 500
BsiSI CCGG 5 cut(s) 149, 216, 233, 275, 343
BslI CCNNNNNNNGG 2 cut(s) 148, 342
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 2 cut(s) 274, 500
Bsp119I TTCGAA 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 275, 430
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 7 cut(s) 155, 173, 239, 329, 446, 475, 527
BspANI GGCC 1 cut(s) 122
BspFNI CGCG 1 cut(s) 173
BspHI TCATGA 2 cut(s) 184, 367
BspLI GGNNCC 2 cut(s) 272, 334
BspT104I TTCGAA 1 cut(s) 465
BspT107I GGYRCC 1 cut(s) 270
BsrDI GCAATG 2 cut(s) 357, 441
BsrFI RCCGGY 3 cut(s) 148, 215, 342
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 2 cut(s) 62, 423
BssAI RCCGGY 3 cut(s) 148, 215, 342
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 109
BssNI GRCGYC 1 cut(s) 478
Bst4CI ACNGT 2 cut(s) 432, 614
BstACI GRCGYC 1 cut(s) 478
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 2 cut(s) 301, 339
BstBI TTCGAA 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 1 cut(s) 376
BstEII GGTNACC 1 cut(s) 218
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 484
BstNSI RCATGY 1 cut(s) 163
BstPI GGTNACC 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 273, 274
BstSLI GKGCMC 2 cut(s) 275, 430
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 709
BsuRI GGCC 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 428, 430
Cac8I GCNNGC 1 cut(s) 348
CciI TCATGA 2 cut(s) 184, 367
Cfr10I RCCGGY 3 cut(s) 148, 215, 342
Cfr9I CCCGGG 1 cut(s) 274
CseI GACGC 2 cut(s) 179, 467
Csp6I GTAC 2 cut(s) 340, 550
CviAII CATG 4 cut(s) 145, 160, 185, 368
CviJI RGCY 7 cut(s) 29, 46, 122, 335, 487, 586, 722
CviKI_1 RGCY 7 cut(s) 29, 46, 122, 335, 487, 586, 722
CviQI GTAC 2 cut(s) 340, 550
DdeI CTNAG 1 cut(s) 376
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 254
Eco88I CYCGRG 2 cut(s) 274, 500
Eco91I GGTNACC 1 cut(s) 218
EcoO65I GGTNACC 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 148, 163, 188, 371
FatI CATG 4 cut(s) 144, 159, 184, 367
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 476, 723
Fsp4HI GCNGC 2 cut(s) 476, 723
FspBI CTAG 1 cut(s) 389
GluI GCNGC 2 cut(s) 476, 723
HaeIII GGCC 1 cut(s) 122
HapII CCGG 5 cut(s) 149, 216, 233, 275, 343
HgaI GACGC 2 cut(s) 179, 467
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 4 cut(s) 148, 163, 188, 371
HinfI GANTC 4 cut(s) 15, 385, 542, 694
HpaII CCGG 5 cut(s) 149, 216, 233, 275, 343
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 6 cut(s) 100, 139, 169, 397, 428, 617
Hpy188I TCNGA 2 cut(s) 557, 576
Hpy188III TCNNGA 5 cut(s) 12, 185, 368, 389, 762
Hpy8I GTNNAC 6 cut(s) 100, 139, 169, 397, 428, 617
HpyAV CCTTC 2 cut(s) 461, 618
HpyCH4III ACNGT 2 cut(s) 432, 614
HpyCH4IV ACGT 4 cut(s) 135, 300, 338, 408
HpyCH4V TGCA 4 cut(s) 4, 428, 633, 725
HpyF10VI GCNNNNNNNGC 1 cut(s) 484
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 4 cut(s) 135, 300, 338, 408
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 4 cut(s) 148, 163, 188, 371
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 7 cut(s) 75, 162, 229, 246, 288, 356, 436
Lsp1109I GCAGC 1 cut(s) 709
LweI GCATC 1 cut(s) 767
MaeI CTAG 1 cut(s) 389
MaeII ACGT 4 cut(s) 135, 300, 338, 408
MaeIII GTNAC 2 cut(s) 218, 479
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 7 cut(s) 85, 254, 257, 334, 394, 589, 703
MhlI GDGCHC 2 cut(s) 275, 430
MluCI AATT 5 cut(s) 228, 654, 667, 678, 738
MnlI CCTC 7 cut(s) 81, 385, 553, 561, 615, 693, 758
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 5 cut(s) 149, 216, 233, 275, 343
MspR9I CCNGG 2 cut(s) 275, 276
Mva1269I GAATGC 1 cut(s) 331
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 484
NciI CCSGG 2 cut(s) 275, 276
NdeII GATC 1 cut(s) 109
NlaIII CATG 4 cut(s) 148, 163, 188, 371
NlaIV GGNNCC 2 cut(s) 272, 334
NmuCI GTSAC 1 cut(s) 479
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 163
NspV TTCGAA 1 cut(s) 465
PagI TCATGA 2 cut(s) 184, 367
PciI ACATGT 1 cut(s) 159
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 4 cut(s) 15, 385, 542, 694
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 2 cut(s) 477, 724
Ppu21I YACGTR 2 cut(s) 301, 339
PscI ACATGT 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 272, 334
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 2 cut(s) 341, 551
RsaNI GTAC 2 cut(s) 340, 550
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 2 cut(s) 476, 723
Sau3AI GATC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 275, 276
SduI GDGCHC 2 cut(s) 275, 430
SfaNI GCATC 1 cut(s) 767
SfuI TTCGAA 1 cut(s) 465
SmaI CCCGGG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 5 cut(s) 228, 654, 667, 678, 738
SsiI CCGC 7 cut(s) 155, 173, 239, 329, 446, 475, 527
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 2 cut(s) 273, 274
TaaI ACNGT 2 cut(s) 432, 614
TaiI ACGT 4 cut(s) 138, 303, 341, 411
TaqI TCGA 1 cut(s) 465
TasI AATT 5 cut(s) 228, 654, 667, 678, 738
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 4 cut(s) 15, 385, 542, 694
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 2 cut(s) 430, 435
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 5 cut(s) 201, 356, 368, 509, 534
TspGWI ACGGA 1 cut(s) 222
TspMI CCCGGG 1 cut(s) 274
TspRI CASTG 2 cut(s) 430, 435
Tth111I GACNNNGTC 1 cut(s) 410
VneI GTGCAC 1 cut(s) 426
XapI RAATTY 2 cut(s) 228, 738
XbaI TCTAGA 1 cut(s) 388
XceI RCATGY 1 cut(s) 163
XmaI CCCGGG 1 cut(s) 274
XspI CTAG 1 cut(s) 389
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.