Rmu_co8331087.1_g000001

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8331087.1
OG0000160
Physical Location & Seq
Forward (+)
1 .. 511
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8331087.1_g000001.1.cds

Sequence Viewer

Length: 332 bp
ctagcaatcttttctcagattccttccagttagagtttcggtgcaccaacaaccaggtcgaatatgaggcccttattattggcctagaggtgttgctagaactgggagttagagacatccaagtacgcgatgtggacttggagtatattcatcgcgagtgcaactttgcggctaatgaactcgctcagttggctataaacgtcaccttgaaatatggggttcgcgagcgaattctcaaggttgagcgacgcaccctgccttcgtggcttgcacgccctgacccaatagatgagcccacagtggcggctcttgatcctcttgatgtggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

109

Amino Acids

12.51

Weight (kDa)

4.5

Isoelectric Point (pI)

22.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 128, 155, 224
AciI CCGC 2 cut(s) 169, 304
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 230
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 107
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 1 cut(s) 307
AoxI GGCC 2 cut(s) 68, 81
ApaLI GTGCAC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 296
Bbv12I GWGCWC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 3 cut(s) 2, 85, 97
BglI GCCNNNNNGGC 1 cut(s) 264
BisI GCNGC 2 cut(s) 170, 305
BlsI GCNGC 2 cut(s) 171, 306
Bme1390I CCNGG 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 69
BmrFI CCNGG 1 cut(s) 55
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 27, 107
BseBI CCWGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 29, 199
BseNI ACTGG 2 cut(s) 27, 107
BseSI GKGCMC 1 cut(s) 46
Bsh1236I CGCG 3 cut(s) 128, 155, 224
BshFI GGCC 2 cut(s) 70, 83
BsiHKAI GWGCWC 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 2 cut(s) 70, 83
Bsp1286I GDGCHC 2 cut(s) 46, 296
Bsp143I GATC 1 cut(s) 312
Bsp68I TCGCGA 2 cut(s) 155, 224
BspACI CCGC 2 cut(s) 169, 304
BspANI GGCC 2 cut(s) 70, 83
BspCNI CTCAG 2 cut(s) 28, 198
BspFNI CGCG 3 cut(s) 128, 155, 224
BspPI GGATC 1 cut(s) 307
BsrI ACTGG 2 cut(s) 27, 107
BssMI GATC 1 cut(s) 312
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 226, 269, 273
BstDEI CTNAG 2 cut(s) 15, 185
BstF5I GGATG 1 cut(s) 116
BstFNI CGCG 3 cut(s) 128, 155, 224
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 2 cut(s) 190, 264
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstSLI GKGCMC 1 cut(s) 46
BstUI CGCG 3 cut(s) 128, 155, 224
BsuRI GGCC 2 cut(s) 70, 83
BtgZI GCGATG 2 cut(s) 136, 143
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 305
BtuMI TCGCGA 2 cut(s) 155, 224
Cac8I GCNNGC 3 cut(s) 226, 269, 273
Cfr13I GGNCC 1 cut(s) 69
CseI GACGC 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 53
Csp6I GTAC 1 cut(s) 124
CviJI RGCY 7 cut(s) 70, 83, 172, 193, 267, 294, 307
CviKI_1 RGCY 7 cut(s) 70, 83, 172, 193, 267, 294, 307
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 15, 185
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 296
FaiI YATR 4 cut(s) 65, 146, 196, 215
Fnu4HI GCNGC 2 cut(s) 170, 305
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 2 cut(s) 170, 305
FspBI CTAG 3 cut(s) 2, 85, 97
GluI GCNGC 2 cut(s) 170, 305
HaeIII GGCC 2 cut(s) 70, 83
HgaI GACGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 195
Hpy166II GTNNAC 2 cut(s) 44, 135
Hpy188I TCNGA 1 cut(s) 18
Hpy188III TCNNGA 4 cut(s) 154, 223, 310, 319
Hpy8I GTNNAC 2 cut(s) 44, 135
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 33, 269
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 44, 161, 271
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 264
HpyF3I CTNAG 2 cut(s) 15, 185
HpySE526I ACGT 1 cut(s) 200
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 6 cut(s) 40, 40, 67, 88, 268, 290
MabI ACCWGGT 1 cut(s) 53
MaeI CTAG 3 cut(s) 2, 85, 97
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 201
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 46, 296
MluCI AATT 1 cut(s) 230
MnlI CCTC 3 cut(s) 60, 81, 326
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
MvnI CGCG 3 cut(s) 128, 155, 224
MwoI GCNNNNNNNGC 2 cut(s) 190, 264
NdeII GATC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 201
NruI TCGCGA 2 cut(s) 155, 224
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 171, 306
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspPI GGNCC 1 cut(s) 69
RruI TCGCGA 2 cut(s) 155, 224
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 2 cut(s) 170, 305
Sau3AI GATC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 69
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 2 cut(s) 46, 296
SetI ASST 5 cut(s) 59, 92, 203, 208, 242
SexAI ACCWGGT 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 1 cut(s) 230
SsiI CCGC 2 cut(s) 169, 304
SspMI CTAG 3 cut(s) 2, 85, 97
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 230
TauI GCSGC 2 cut(s) 172, 307
TfiI GAWTC 1 cut(s) 19
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 139, 191
TspRI CASTG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 42
XapI RAATTY 1 cut(s) 230
XspI CTAG 3 cut(s) 2, 85, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.