pycom05g06510

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000160
Physical Location & Seq
Reverse (-)
8980068 .. 8980419
352 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06510.1

Sequence Viewer

Length: 309 bp
ATGCCAATCTCAGATTTATTAATTGATGCCGCAGCTAATCATGAACTACTATCTTTTATGGACGGTCACGCGGGTTACAACCAGATTTTCATCGCCGAAGCTGACGTCCACAAGACGGCTTTCCGTTGCCCTGGGGCACTTGGTACTTACAAATGGGTAGTCATGCCTTTCGGCCTCAAGAATGCCAGCGCCACATACCAACGAGCCATGAATCTGATCTTCCATGACTTAATCGGTACAATCGTCGAAGTTTATATCGATGATGTGGTCGTAAAATCCAAACGCCGCGCAAGAACAACCTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

7.91

Isoelectric Point (pI)

25.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 10 - 97 9.7e-16 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccII CGCG 2 cut(s) 71, 288
AciI CCGC 3 cut(s) 30, 71, 286
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 2 cut(s) 145, 238
AfiI CCNNNNNNNGG 1 cut(s) 115
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 35, 101
AluI AGCT 2 cut(s) 35, 101
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 32
ArsI GACNNNNNNTTYG 4 cut(s) 90, 122, 144, 176
AseI ATTAAT 1 cut(s) 20
AspLEI GCGC 2 cut(s) 191, 290
BaeGI GKGCMC 1 cut(s) 139
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BbvI GCAGC 1 cut(s) 44
BceAI ACGGC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 3 cut(s) 30, 33, 286
BlsI GCNGC 3 cut(s) 31, 34, 287
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 130, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 1 cut(s) 132
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 130, 131
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 71, 288
BshFI GGCC 1 cut(s) 174
BshVI ATCGAT 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 115
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 216
BspACI CCGC 3 cut(s) 30, 71, 286
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 1 cut(s) 23
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 2 cut(s) 71, 288
BspHI TCATGA 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 130, 131
BssMI GATC 1 cut(s) 216
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 10
BstFNI CGCG 2 cut(s) 71, 288
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 290
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 139
BstUI CGCG 2 cut(s) 71, 288
BstV1I GCAGC 1 cut(s) 44
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 40
CfoI GCGC 2 cut(s) 191, 290
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 2 cut(s) 144, 237
CviAII CATG 4 cut(s) 41, 163, 208, 224
CviJI RGCY 5 cut(s) 35, 101, 119, 174, 206
CviKI_1 RGCY 5 cut(s) 35, 101, 119, 174, 206
CviQI GTAC 2 cut(s) 144, 237
DdeI CTNAG 1 cut(s) 10
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 4 cut(s) 44, 166, 211, 227
FaiI YATR 7 cut(s) 42, 59, 164, 196, 209, 225, 255
FatI CATG 4 cut(s) 40, 162, 207, 223
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 30, 33, 286
Fsp4HI GCNGC 3 cut(s) 30, 33, 286
GlaI GCGC 2 cut(s) 190, 289
GluI GCNGC 3 cut(s) 30, 33, 286
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 1 cut(s) 174
HhaI GCGC 2 cut(s) 191, 290
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 4 cut(s) 44, 166, 211, 227
Hin6I GCGC 2 cut(s) 189, 288
HinP1I GCGC 2 cut(s) 189, 288
HinfI GANTC 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 13, 216
Hpy188III TCNNGA 2 cut(s) 41, 178
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 105
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 4 cut(s) 44, 166, 211, 227
HspAI GCGC 2 cut(s) 189, 288
Kzo9I GATC 1 cut(s) 216
LpnPI CCDG 4 cut(s) 95, 117, 144, 199
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 16
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 65, 74
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 21
MnlI CCTC 1 cut(s) 185
MseI TTAA 2 cut(s) 20, 230
MspR9I CCNGG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 71, 288
NdeII GATC 1 cut(s) 216
NlaIII CATG 4 cut(s) 44, 166, 211, 227
NmuCI GTSAC 1 cut(s) 65
PagI TCATGA 1 cut(s) 40
PasI CCCWGGG 1 cut(s) 131
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 211
PkrI GCNGC 3 cut(s) 31, 34, 287
PshBI ATTAAT 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
RsaI GTAC 2 cut(s) 145, 238
RsaNI GTAC 2 cut(s) 144, 237
SaqAI TTAA 2 cut(s) 20, 230
SatI GCNGC 3 cut(s) 30, 33, 286
Sau3AI GATC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 139
SetI ASST 4 cut(s) 37, 103, 108, 302
SfaNI GCATC 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 21
SsiI CCGC 3 cut(s) 30, 71, 286
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 246, 258
TasI AATT 1 cut(s) 21
TauI GCSGC 2 cut(s) 32, 288
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 20, 230
Tru9I TTAA 2 cut(s) 20, 230
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 57, 79, 224
TspGWI ACGGA 1 cut(s) 113
VspI ATTAAT 1 cut(s) 20
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.