Rroxscaffold_6G00423370

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
44482377 .. 44483467
1091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423370.1

Sequence Viewer

Length: 495 bp
ATGCGCGAAGTTCATTCGGCATTTGCGGCACTCACCAAGCAAGTCCAAAGATGCGATGGTTGCTCGACGACATGGGTATTTTTGGCCCGTCGCCGTCCAATCATTACGAGTTCAAGAGCAACATCATCTTATTGGAGAAGACTACGTTCAAGCTATGTGGCAGAACATGAAGACCTTAGCGAAAAGCGCTTGGAGGCTTTAGACGGTTTGGTCATGGAAATACAACGAGTCGCTCGCGCCTATATCAAGCGTACGCGGGGAAGGAGTTACAGCAAAGGAGAGTTGGTTTGGAAAGCGGTTCTCCCACTTGGTGAAAAAATAGATGGTCGCAAGAAATGGACTCCAAGATGGGAAGGCTCGTACATCATCTATAAAATCTTAGAGAAAGGAGCTTTTCATCTCAAGAACCTAGATGGAGATGTCCATCATAACCCTATCATTGGTAGATACTTGAAGAAATACTTTCCTAATATCCGGGACTCGGAGGAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

19.22

Weight (kDa)

9.96

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccII CGCG 3 cut(s) 6, 237, 256
AciI CCGC 3 cut(s) 26, 256, 296
AdeI CACNNNGTG 1 cut(s) 311
AfaI GTAC 2 cut(s) 253, 362
AfeI AGCGCT 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 440, 481
AgsI TTSAA 3 cut(s) 114, 150, 454
AluBI AGCT 2 cut(s) 153, 392
AluI AGCT 2 cut(s) 153, 392
Aor51HI AGCGCT 1 cut(s) 188
AoxI GGCC 1 cut(s) 84
AspLEI GCGC 3 cut(s) 6, 189, 239
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 476
AsuHPI GGTGA 2 cut(s) 25, 323
BbsI GAAGAC 2 cut(s) 145, 177
BccI CCATC 5 cut(s) 50, 317, 342, 407, 432
BceAI ACGGC 1 cut(s) 78
BcnI CCSGG 1 cut(s) 476
BfaI CTAG 1 cut(s) 410
BfoI RGCGCY 1 cut(s) 190
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 145, 177
Bpu10I CCTNAGC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 423
BsaXI ACNNNNNCTCC 3 cut(s) 270, 300, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 481
Bse8I GATNNNNATC 1 cut(s) 423
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 2 cut(s) 440, 481
Bsh1236I CGCG 3 cut(s) 6, 237, 256
BshFI GGCC 1 cut(s) 86
BsiSI CCGG 1 cut(s) 475
BsiWI CGTACG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 2 cut(s) 440, 481
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 1 cut(s) 86
BspACI CCGC 3 cut(s) 26, 256, 296
BspANI GGCC 1 cut(s) 86
BspFNI CGCG 3 cut(s) 6, 237, 256
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 176, 379
BstFNI CGCG 3 cut(s) 6, 237, 256
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 3 cut(s) 6, 189, 239
BstMWI GCNNNNNNNGC 3 cut(s) 26, 60, 186
BstSCI CCNGG 1 cut(s) 474
BstUI CGCG 3 cut(s) 6, 237, 256
BstV2I GAAGAC 2 cut(s) 145, 177
BsuRI GGCC 1 cut(s) 86
BtgZI GCGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 3 cut(s) 6, 189, 239
Cfr13I GGNCC 1 cut(s) 85
Csp6I GTAC 2 cut(s) 252, 361
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 3 cut(s) 72, 167, 214
CviJI RGCY 5 cut(s) 86, 153, 197, 357, 392
CviKI_1 RGCY 5 cut(s) 86, 153, 197, 357, 392
CviQI GTAC 2 cut(s) 252, 361
DdeI CTNAG 2 cut(s) 176, 379
DraIII CACNNNGTG 1 cut(s) 311
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eco47III AGCGCT 1 cut(s) 188
FaeI CATG 3 cut(s) 75, 170, 217
FaiI YATR 7 cut(s) 73, 156, 168, 215, 243, 372, 429
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 491
FatI CATG 3 cut(s) 71, 166, 213
FauI CCCGC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 410
GlaI GCGC 3 cut(s) 5, 188, 238
GluI GCNGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 475
HhaI GCGC 3 cut(s) 6, 189, 239
Hin1II CATG 3 cut(s) 75, 170, 217
Hin6I GCGC 3 cut(s) 4, 187, 237
HinP1I GCGC 3 cut(s) 4, 187, 237
HinfI GANTC 3 cut(s) 228, 340, 479
HpaII CCGG 1 cut(s) 475
HphI GGTGA 2 cut(s) 25, 323
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 2 cut(s) 114, 403
Hpy99I CGWCG 2 cut(s) 70, 93
HpyAV CCTTC 2 cut(s) 255, 347
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 60, 186
HpyF3I CTNAG 2 cut(s) 176, 379
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 3 cut(s) 75, 170, 217
HspAI GCGC 3 cut(s) 4, 187, 237
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 1 cut(s) 488
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 410
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 3 cut(s) 150, 182, 466
MlyI GAGTC 3 cut(s) 237, 334, 473
MnlI CCTC 2 cut(s) 187, 478
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 476
MvnI CGCG 3 cut(s) 6, 237, 256
MwoI GCNNNNNNNGC 3 cut(s) 26, 60, 186
NciI CCSGG 1 cut(s) 476
NlaIII CATG 3 cut(s) 75, 170, 217
Pfl23II CGTACG 1 cut(s) 251
PfoI TCCNGGA 1 cut(s) 474
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 3 cut(s) 236, 334, 473
PpsI GAGTC 3 cut(s) 236, 334, 473
PspLI CGTACG 1 cut(s) 251
PspPI GGNCC 1 cut(s) 85
RsaI GTAC 2 cut(s) 253, 362
RsaNI GTAC 2 cut(s) 252, 361
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 3 cut(s) 237, 334, 473
ScrFI CCNGG 1 cut(s) 476
SetI ASST 5 cut(s) 148, 155, 177, 394, 411
SfaNI GCATC 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SsiI CCGC 3 cut(s) 26, 256, 296
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 65
TauI GCSGC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 183, 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 53
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.