Rroxscaffold_7G00205630

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000160
Physical Location & Seq
Reverse (-)
55178196 .. 55182643
4448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00205630.1

Sequence Viewer

Length: 702 bp
ATGCCTCCTCCGGCTAGGGATGAACGCTCGCCAACTAGGCGGCCACTTTTCGGGCGTAGATTGTTTCGTGAGGAACCGGAAAGTAAACCCTCGGTTTTTGAGAGACGGGGGCAAGGACCATGCGGCGGGGGTTTTACGGTGGAGCCTAAGAAAGTCCAAAGTATAGTGATCACACCCCCAACGGAAAGCATGACGGGGGAACAACCATGCGTAGACACATCTTGTAACATGGTTTACATTCTCCCTATGAAATATGCACTACCAATTACCGCACAGGAATGTGTAGACGCCGAAGAGAGTAGTGAACAGCCTTTGCAAATCACTTCGCCAAAGAACAACACCTCTAGAGGAGGCTCCGATGAAGATTCTTCAATTGGGATTGCCAAGCAACCGGACACTCTAGATGAGCAAGATGTAGGTTATATCGGTGAACTGCTTAAGTACGTGCAGATGACATCCAAGTATGCGGCGATTCTCTCGCTCGTGATTAACCGTTTTCGCGACAAGTATAGGGGCGACGGTCGCTTGCTTGCTCGATATTTGGATCGCGCGCTTGAGTTTTTGATCCGGTTTGAGGACGTGGACCTTGAATACATACCTCTCGAGCGCAATTTCACCGCAAACGAGCCGGCTCGATTGGCTACGGGCGTTACTCCGAAATATGGGGTTCGCGAGGGTATTCGAAAGTGGAGCAGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

233

Amino Acids

26.21

Weight (kDa)

5.53

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 213, 285
AccII CGCG 4 cut(s) 501, 549, 551, 672
AciI CCGC 6 cut(s) 40, 123, 126, 270, 467, 618
AclWI GGATC 2 cut(s) 552, 559
AcoI YGGCCR 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 4 cut(s) 50, 125, 574, 662
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 2 cut(s) 372, 590
AjiI CACGTC 1 cut(s) 580
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 2 cut(s) 552, 559
Ama87I CYCGRG 1 cut(s) 602
AoxI GGCC 1 cut(s) 41
ApeKI GCWGC 1 cut(s) 693
AspLEI GCGC 3 cut(s) 551, 553, 609
AspS9I GGNCC 2 cut(s) 116, 583
AsuHPI GGTGA 2 cut(s) 440, 607
AsuII TTCGAA 1 cut(s) 682
AvaI CYCGRG 1 cut(s) 602
AvaII GGWCC 2 cut(s) 116, 583
BauI CACGAG 1 cut(s) 482
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 4 cut(s) 15, 36, 345, 401
BfrI CTTAAG 1 cut(s) 437
BglI GCCNNNNNGGC 1 cut(s) 37
BisI GCNGC 4 cut(s) 41, 124, 468, 694
BlsI GCNGC 4 cut(s) 42, 125, 469, 695
Bme18I GGWCC 2 cut(s) 116, 583
BmeT110I CYCGRG 1 cut(s) 602
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 2 cut(s) 116, 583
BmiI GGNNCC 3 cut(s) 75, 144, 355
Bpu14I TTCGAA 1 cut(s) 682
BpuEI CTTGAG 1 cut(s) 575
BsaAI YACGTR 1 cut(s) 445
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 3 cut(s) 76, 391, 567
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 125, 574, 662
Bse118I RCCGGY 1 cut(s) 628
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 25, 455
BseLI CCNNNNNNNGG 4 cut(s) 50, 125, 574, 662
BsePI GCGCGC 1 cut(s) 549
BseRI GAGGAG 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 467
Bsh1236I CGCG 4 cut(s) 501, 549, 551, 672
Bsh1285I CGRYCG 1 cut(s) 523
BshFI GGCC 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 602
BsiSI CCGG 5 cut(s) 11, 77, 392, 568, 629
BslI CCNNNNNNNGG 4 cut(s) 50, 125, 574, 662
BsmAI GTCTC 1 cut(s) 97
BsmBI CGTCTC 1 cut(s) 97
BsnI GGCC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 602
Bsp119I TTCGAA 1 cut(s) 682
Bsp143I GATC 3 cut(s) 168, 544, 564
Bsp68I TCGCGA 2 cut(s) 501, 672
BspACI CCGC 6 cut(s) 40, 123, 126, 270, 467, 618
BspANI GGCC 1 cut(s) 43
BspFNI CGCG 4 cut(s) 501, 549, 551, 672
BspLI GGNNCC 3 cut(s) 75, 144, 355
BspPI GGATC 2 cut(s) 552, 559
BspT104I TTCGAA 1 cut(s) 682
BspTI CTTAAG 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 628
BssAI RCCGGY 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 90
BssHII GCGCGC 1 cut(s) 549
BssMI GATC 3 cut(s) 168, 544, 564
BssNI GRCGYC 1 cut(s) 288
BssSI CACGAG 1 cut(s) 482
Bst2BI CACGAG 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 139, 494, 521
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 437
BstBAI YACGTR 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 682
BstC8I GCNNGC 5 cut(s) 29, 527, 531, 551, 630
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 25, 455
BstFNI CGCG 4 cut(s) 501, 549, 551, 672
BstHHI GCGC 3 cut(s) 551, 553, 609
BstKTI GATC 3 cut(s) 171, 547, 567
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 3 cut(s) 168, 544, 564
BstMCI CGRYCG 1 cut(s) 523
BstMWI GCNNNNNNNGC 3 cut(s) 37, 522, 638
BstUI CGCG 4 cut(s) 501, 549, 551, 672
BsuRI GGCC 1 cut(s) 43
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 2 cut(s) 25, 455
BtuMI TCGCGA 2 cut(s) 501, 672
Cac8I GCNNGC 5 cut(s) 29, 527, 531, 551, 630
CfoI GCGC 3 cut(s) 551, 553, 609
Cfr10I RCCGGY 1 cut(s) 628
Cfr13I GGNCC 2 cut(s) 116, 583
CseI GACGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 442
CviAII CATG 4 cut(s) 120, 190, 207, 229
CviJI RGCY 8 cut(s) 14, 43, 145, 310, 354, 628, 632, 641
CviKI_1 RGCY 8 cut(s) 14, 43, 145, 310, 354, 628, 632, 641
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 170, 546, 566
DpnII GATC 3 cut(s) 168, 544, 564
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 116, 583
Eco88I CYCGRG 1 cut(s) 602
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 4 cut(s) 123, 193, 210, 232
FatI CATG 4 cut(s) 119, 189, 206, 228
FauI CCCGC 1 cut(s) 119
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 2 cut(s) 213, 285
Fnu4HI GCNGC 4 cut(s) 41, 124, 468, 694
FokI GGATG 2 cut(s) 32, 442
Fsp4HI GCNGC 4 cut(s) 41, 124, 468, 694
FspBI CTAG 4 cut(s) 15, 36, 345, 401
GlaI GCGC 3 cut(s) 550, 552, 608
GluI GCNGC 4 cut(s) 41, 124, 468, 694
HaeIII GGCC 1 cut(s) 43
HapII CCGG 5 cut(s) 11, 77, 392, 568, 629
HgaI GACGC 1 cut(s) 296
HhaI GCGC 3 cut(s) 551, 553, 609
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 4 cut(s) 123, 193, 210, 232
Hin6I GCGC 3 cut(s) 549, 551, 607
HinP1I GCGC 3 cut(s) 549, 551, 607
HinfI GANTC 2 cut(s) 365, 472
HpaII CCGG 5 cut(s) 11, 77, 392, 568, 629
HphI GGTGA 2 cut(s) 440, 607
Hpy166II GTNNAC 7 cut(s) 86, 214, 235, 286, 305, 431, 583
Hpy188I TCNGA 2 cut(s) 358, 657
Hpy188III TCNNGA 7 cut(s) 68, 345, 401, 484, 500, 602, 671
Hpy8I GTNNAC 7 cut(s) 86, 214, 235, 286, 305, 431, 583
Hpy99I CGWCG 1 cut(s) 521
HpyCH4III ACNGT 3 cut(s) 139, 494, 521
HpyCH4IV ACGT 2 cut(s) 444, 579
HpyCH4V TGCA 3 cut(s) 257, 316, 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 522, 638
HpyF3I CTNAG 1 cut(s) 147
HpySE526I ACGT 2 cut(s) 444, 579
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 4 cut(s) 123, 193, 210, 232
HspAI GCGC 3 cut(s) 549, 551, 607
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 3 cut(s) 168, 544, 564
LmnI GCTCC 3 cut(s) 142, 359, 690
LpnPI CCDG 6 cut(s) 24, 90, 260, 405, 581, 642
MaeI CTAG 4 cut(s) 15, 36, 345, 401
MaeII ACGT 2 cut(s) 444, 579
MaeIII GTNAC 2 cut(s) 224, 649
MalI GATC 3 cut(s) 170, 546, 566
MboI GATC 3 cut(s) 168, 544, 564
MboII GAAGA 3 cut(s) 305, 360, 374
MfeI CAATTG 1 cut(s) 372
MluCI AATT 3 cut(s) 264, 372, 610
MroNI GCCGGC 1 cut(s) 628
MseI TTAA 2 cut(s) 438, 489
MslI CAYNNNNRTG 1 cut(s) 277
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 5 cut(s) 11, 77, 392, 568, 629
MunI CAATTG 1 cut(s) 372
MvnI CGCG 4 cut(s) 501, 549, 551, 672
MwoI GCNNNNNNNGC 3 cut(s) 37, 522, 638
NaeI GCCGGC 1 cut(s) 630
NdeII GATC 3 cut(s) 168, 544, 564
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 4 cut(s) 123, 193, 210, 232
NlaIV GGNNCC 3 cut(s) 75, 144, 355
NruI TCGCGA 2 cut(s) 501, 672
NspV TTCGAA 1 cut(s) 682
PaeR7I CTCGAG 1 cut(s) 602
PauI GCGCGC 1 cut(s) 549
PdiI GCCGGC 1 cut(s) 630
PfeI GAWTC 2 cut(s) 365, 472
PkrI GCNGC 4 cut(s) 42, 125, 469, 695
Ppu21I YACGTR 1 cut(s) 445
PspN4I GGNNCC 3 cut(s) 75, 144, 355
PspPI GGNCC 2 cut(s) 116, 583
PteI GCGCGC 1 cut(s) 549
RruI TCGCGA 2 cut(s) 501, 672
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 2 cut(s) 438, 489
SatI GCNGC 4 cut(s) 41, 124, 468, 694
Sau3AI GATC 3 cut(s) 168, 544, 564
Sau96I GGNCC 2 cut(s) 116, 583
SetI ASST 6 cut(s) 344, 421, 447, 582, 588, 601
Sfr274I CTCGAG 1 cut(s) 602
SfuI TTCGAA 1 cut(s) 682
SinI GGWCC 2 cut(s) 116, 583
SlaI CTCGAG 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 277
SmlI CTYRAG 3 cut(s) 437, 554, 602
SmoI CTYRAG 3 cut(s) 437, 554, 602
Sse9I AATT 3 cut(s) 264, 372, 610
SsiI CCGC 6 cut(s) 40, 123, 126, 270, 467, 618
SspMI CTAG 4 cut(s) 15, 36, 345, 401
TaaI ACNGT 3 cut(s) 139, 494, 521
TaiI ACGT 2 cut(s) 447, 582
TaqI TCGA 4 cut(s) 535, 603, 634, 682
TasI AATT 3 cut(s) 264, 372, 610
TauI GCSGC 3 cut(s) 43, 126, 470
TfiI GAWTC 2 cut(s) 365, 472
Tru1I TTAA 2 cut(s) 438, 489
Tru9I TTAA 2 cut(s) 438, 489
TseI GCWGC 1 cut(s) 693
TspDTI ATGAA 3 cut(s) 36, 263, 375
TspGWI ACGGA 1 cut(s) 197
Vha464I CTTAAG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 116, 583
XbaI TCTAGA 2 cut(s) 344, 400
XhoI CTCGAG 1 cut(s) 602
XmiI GTMKAC 2 cut(s) 213, 285
XspI CTAG 4 cut(s) 15, 36, 345, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.