Rroxscaffold_5G00387510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000160
Physical Location & Seq
Reverse (-)
66139270 .. 66139638
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387510.1

Sequence Viewer

Length: 369 bp
ATGGAGGCATTAGCCGCTAAGCCATTGGTGGCTCCCTGCGTTTTCAAAAGCGGGCGCGCTCGGAGTCTTCTAAACCTAGTGTTTTGCGGGATCACGAAGGAAAGATCGCCTCCTCCGATTAGGGACGAAAGCTCGCCAACTAGGCGGCCACTTGTCGGGCGTAGGTTGTTTCGTGAAGAACCGAGAAAGCAAACCCTCGATTTTGAGAGACTAGGGGGCGAGGACCACGCGGCGGGGGTTTTGCGGTGGAGACCTAAGAAAGTCCAAAGTATAGTGATCACACCCCCAAAGGCAAGCACGACGGGGGAACAGCCGTCGGCCTCGCCAAAACAGGTCACCACGACACGAAGCATAACCAAGTTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.56

Weight (kDa)

11.1

Isoelectric Point (pI)

69.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 57, 230
AciI CCGC 7 cut(s) 15, 51, 87, 145, 230, 233, 244
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 155, 232, 363
AgsI TTSAA 1 cut(s) 46
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 202, 244
AlwI GGATC 1 cut(s) 98
AoxI GGCC 2 cut(s) 146, 318
AspLEI GCGC 2 cut(s) 57, 59
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 298
BclI TGATCA 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 202, 244
BfaI CTAG 3 cut(s) 77, 141, 212
BglI GCCNNNNNGGC 1 cut(s) 142
BisI GCNGC 3 cut(s) 15, 146, 231
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 3 cut(s) 16, 147, 232
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 244
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 232, 363
BseLI CCNNNNNNNGG 3 cut(s) 155, 232, 363
BsePI GCGCGC 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 102
Bsh1236I CGCG 2 cut(s) 57, 230
BshFI GGCC 2 cut(s) 148, 320
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 3 cut(s) 155, 232, 363
BsmAI GTCTC 2 cut(s) 202, 244
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 2 cut(s) 148, 320
Bso31I GGTCTC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 90, 104, 276
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 7 cut(s) 15, 51, 87, 145, 230, 233, 244
BspANI GGCC 2 cut(s) 148, 320
BspFNI CGCG 2 cut(s) 57, 230
BspLI GGNNCC 1 cut(s) 33
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 244
BssHII GCGCGC 1 cut(s) 55
BssMI GATC 3 cut(s) 90, 104, 276
BstC8I GCNNGC 4 cut(s) 53, 57, 134, 295
BstDEI CTNAG 2 cut(s) 18, 255
BstEII GGTNACC 1 cut(s) 334
BstFNI CGCG 2 cut(s) 57, 230
BstHHI GCGC 2 cut(s) 57, 59
BstKTI GATC 3 cut(s) 93, 107, 279
BstMAI GTCTC 2 cut(s) 202, 244
BstMBI GATC 3 cut(s) 90, 104, 276
BstMWI GCNNNNNNNGC 2 cut(s) 14, 142
BstPI GGTNACC 1 cut(s) 334
BstUI CGCG 2 cut(s) 57, 230
BstV2I GAAGAC 1 cut(s) 59
BsuRI GGCC 2 cut(s) 148, 320
Cac8I GCNNGC 4 cut(s) 53, 57, 134, 295
CfoI GCGC 2 cut(s) 57, 59
Cfr13I GGNCC 1 cut(s) 223
CviJI RGCY 7 cut(s) 14, 22, 32, 132, 148, 313, 320
CviKI_1 RGCY 7 cut(s) 14, 22, 32, 132, 148, 313, 320
DdeI CTNAG 2 cut(s) 18, 255
DpnI GATC 3 cut(s) 92, 106, 278
DpnII GATC 3 cut(s) 90, 104, 276
EaeI YGGCCR 1 cut(s) 146
Eco31I GGTCTC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 223
Eco91I GGTNACC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 334
FaiI YATR 2 cut(s) 272, 353
FaqI GGGAC 1 cut(s) 137
FauI CCCGC 3 cut(s) 44, 80, 226
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 15, 146, 231
Fsp4HI GCNGC 3 cut(s) 15, 146, 231
FspBI CTAG 3 cut(s) 77, 141, 212
GlaI GCGC 2 cut(s) 56, 58
GluI GCNGC 3 cut(s) 15, 146, 231
HaeIII GGCC 2 cut(s) 148, 320
HhaI GCGC 2 cut(s) 57, 59
Hin6I GCGC 2 cut(s) 55, 57
HinP1I GCGC 2 cut(s) 55, 57
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 63, 117
Hpy188III TCNNGA 2 cut(s) 94, 173
Hpy99I CGWCG 2 cut(s) 304, 319
HpyAV CCTTC 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 142
HpyF3I CTNAG 2 cut(s) 18, 255
HspAI GCGC 2 cut(s) 55, 57
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 3 cut(s) 90, 104, 276
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 2 cut(s) 49, 317
MaeI CTAG 3 cut(s) 77, 141, 212
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 92, 106, 278
MboI GATC 3 cut(s) 90, 104, 276
MboII GAAGA 2 cut(s) 59, 188
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 6 cut(s) 120, 123, 206, 214, 331, 357
MvnI CGCG 2 cut(s) 57, 230
MwoI GCNNNNNNNGC 2 cut(s) 14, 142
NdeII GATC 3 cut(s) 90, 104, 276
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 334
PauI GCGCGC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 113
PkrI GCNGC 3 cut(s) 16, 147, 232
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PspEI GGTNACC 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 33
PspPI GGNCC 1 cut(s) 223
PteI GCGCGC 1 cut(s) 55
SatI GCNGC 3 cut(s) 15, 146, 231
Sau3AI GATC 3 cut(s) 90, 104, 276
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 1 cut(s) 73
SetI ASST 6 cut(s) 78, 134, 167, 256, 336, 368
SinI GGWCC 1 cut(s) 223
SsiI CCGC 7 cut(s) 15, 51, 87, 145, 230, 233, 244
SspMI CTAG 3 cut(s) 77, 141, 212
TaqI TCGA 1 cut(s) 198
TauI GCSGC 3 cut(s) 17, 148, 233
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 223
XspI CTAG 3 cut(s) 77, 141, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.