Rw1G008480

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000160
Physical Location & Seq
Reverse (-)
18328370 .. 18329974
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008480.1

Sequence Viewer

Length: 1431 bp
ATGGAGAAGCTATGCCTAACTCTGTATTTTTCGGCATGCAAGTTACGGCACTACATGTTATCCTTTACCACCTGCATCATCGCTCAAACTGACTTGGTCAAATACAAGTTGTCGCGGCCTATTTTGAGAGGCCGCATTGGCAAGTGGGTACTAGCTCTCTCAGAGTTTTCGCTCCAATATCCCTGGGTACTGTTCTTCGATGGCTTAAGAACCGACACTCTGGCCGGAGCAGGGATTGTTTTGGAAAACCTAGCCGGTGACCGTTTCTCTTATTCCTTCCAACTAGAGTTCCAATGCATAAATAATCAGGCCGAATATGAAGCTCTTATAATTGGACTCGAGGTCTTATTGGAAATAGGCATAAAGGACGTTCAGATTCGCGGCGACTCTCAGCTCGTTATAAACCAGCTCCAGGAAAAATATCGATGTGCAAGTTGGTTGCTTGTACCATATCTGAATCGCACCATCGAGCTTCTGGACCAATTTGACTACGTCGATCTGAAGCATATACCCCGCGAGTGCAACTTTGCAGCTAATGAACTCGCTCAGCTGGCCACAGGCATCACGTTGAAGTATGGAGTGCGCGAGCGCATTTTGAAAGTTGAGCGTCGCACATTACCTTCATGGCTTGCACGACCTGATCCACCAGATGATCCCGTGGTCACGATACTAGAACCTATCGATGTGGATTGGCGAATCCCGTTGATTGAGTACCTCAAACAACCAGACCGAAGAGCTGACAGGAAGATTCGTTTGCTCGCGCTAAATTACTTCCTTAGAGGTGATGAGTTGCGGCGACGAGGGGAAGATGGCATAGACTTTCGTTGTGTCTATGGCCGCGAAGCCAAACGATTAATGCGCGAAGTACACACGGGGATATGTGGGGCCCATCAAGCGGGGCCTAAGATGCGATGGCTTTTGCGACGGCATGGTTATTATTGGCCCAGCATTTTAAAGGATTGTATCGTATTTGCCAAAGGCTGTGAAGATTGTCAAGCGCACGGTCCAGTCCAGCATGTTCCTACCATCCCTATGCAGCCTATTATCAAGCCTTGGCCTGCGCGAGGTTGGGCATTGGACTTGATTGGGATGATCCATCCCCATTCTTCTCTTCAACACAAGTTCATCATCGTCGCTACTGACTACTTCACCAAATGGGTTGAAATAGAGCCTTTGAAGGAGGCTTCCAGTGCCACCATTTGCCAGTTTATTTTCCGTAACATTCTCTGCAGGTTTGGTATCCCCGAGGTGCTAGTTTCGGACCGGGGGGCAGCGTTCATGGGAGGCCCCGTCGAGGAGCTTGTCAATGATTTTGGCATCCAATTCATCCACAGCACTCCATATTACGCTCAATCTAATGGTCAAACGGAGGCTAGCAACAAGACAATCATTACCTTACTGAAGAAGATGCTGGTAGAGAACCCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

476

Amino Acids

54.83

Weight (kDa)

8.46

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 66 - 184 1.2e-19 Reverse transcriptase-like
Integrase_H2C2 PF17921 281 - 334 8.4e-08 Integrase zinc binding domain
rve PF00665 355 - 449 5.1e-09 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 329, 401
AarI CACCTGC 1 cut(s) 80
Acc36I ACCTGC 2 cut(s) 80, 1221
AccII CGCG 8 cut(s) 115, 381, 516, 585, 761, 840, 861, 1063
AciI CCGC 7 cut(s) 115, 133, 381, 514, 793, 838, 896
AclWI GGATC 3 cut(s) 635, 647, 1087
AcoI YGGCCR 3 cut(s) 222, 552, 835
AcuI CTGAAG 2 cut(s) 521, 1421
AfaI GTAC 5 cut(s) 150, 189, 447, 713, 867
AfiI CCNNNNNNNGG 5 cut(s) 231, 412, 895, 1064, 1294
AflII CTTAAG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 5 cut(s) 571, 598, 1115, 1163, 1177
AhdI GACNNNNNGTC 1 cut(s) 341
AjnI CCWGG 2 cut(s) 182, 411
AlwI GGATC 3 cut(s) 635, 647, 1087
Ama87I CYCGRG 2 cut(s) 338, 1244
ApaI GGGCCC 1 cut(s) 889
ApeKI GCWGC 3 cut(s) 530, 1036, 1271
AseI ATTAAT 1 cut(s) 854
AspLEI GCGC 6 cut(s) 585, 591, 763, 861, 1000, 1063
AspS9I GGNCC 8 cut(s) 478, 885, 886, 899, 942, 1004, 1261, 1286
AsuC2I CCSGG 1 cut(s) 1265
AsuHPI GGTGA 3 cut(s) 269, 794, 1141
AsuNHI GCTAGC 1 cut(s) 1373
AvaI CYCGRG 2 cut(s) 338, 1244
AvaII GGWCC 3 cut(s) 478, 1004, 1261
BaeGI GKGCMC 1 cut(s) 889
BalI TGGCCA 1 cut(s) 554
BanII GRGCYC 1 cut(s) 889
BbvI GCAGC 3 cut(s) 542, 1048, 1283
BccI CCATC 7 cut(s) 194, 473, 803, 897, 906, 1034, 1104
BceAI ACGGC 2 cut(s) 62, 941
BciT130I CCWGG 2 cut(s) 184, 413
BciVI GTATCC 1 cut(s) 1250
BcnI CCSGG 1 cut(s) 1265
BfaI CTAG 6 cut(s) 152, 251, 284, 671, 1253, 1374
BfmI CTRYAG 1 cut(s) 1228
BfrI CTTAAG 1 cut(s) 205
BfuAI ACCTGC 2 cut(s) 80, 1221
BfuI GTATCC 1 cut(s) 1250
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 8 cut(s) 116, 133, 382, 531, 794, 838, 1037, 1272
BlpI GCTNAGC 1 cut(s) 546
BlsI GCNGC 8 cut(s) 117, 134, 383, 532, 795, 839, 1038, 1273
Bme1390I CCNGG 3 cut(s) 184, 413, 1265
Bme18I GGWCC 3 cut(s) 478, 1004, 1261
BmeRI GACNNNNNGTC 1 cut(s) 341
BmeT110I CYCGRG 2 cut(s) 338, 1244
BmgT120I GGNCC 8 cut(s) 478, 885, 886, 899, 942, 1004, 1261, 1286
BmiI GGNNCC 4 cut(s) 886, 887, 900, 1288
BmrFI CCNGG 3 cut(s) 184, 413, 1265
BmsI GCATC 5 cut(s) 84, 570, 897, 1326, 1398
BmtI GCTAGC 1 cut(s) 1377
BpmI CTGGAG 1 cut(s) 395
Bpu1102I GCTNAGC 1 cut(s) 546
BpuMI CCSGG 1 cut(s) 1265
Bsa29I ATCGAT 2 cut(s) 424, 681
BsaJI CCNNGG 6 cut(s) 182, 183, 657, 1052, 1245, 1264
BsaXI ACNNNNNCTCC 2 cut(s) 1275, 1305
Bsc4I CCNNNNNNNGG 5 cut(s) 231, 412, 895, 1064, 1294
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 3 cut(s) 1007, 1188, 1204
BseBI CCWGG 2 cut(s) 184, 413
BseCI ATCGAT 2 cut(s) 424, 681
BseDI CCNNGG 6 cut(s) 182, 183, 657, 1052, 1245, 1264
BseGI GGATG 5 cut(s) 1026, 1095, 1096, 1317, 1326
BseLI CCNNNNNNNGG 5 cut(s) 231, 412, 895, 1064, 1294
BseMII CTCAG 3 cut(s) 174, 404, 560
BseNI ACTGG 3 cut(s) 1007, 1188, 1204
BseRI GAGGAG 1 cut(s) 1310
BseSI GKGCMC 1 cut(s) 889
BseXI GCAGC 3 cut(s) 542, 1048, 1283
BseYI CCCAGC 1 cut(s) 944
Bsh1236I CGCG 8 cut(s) 115, 381, 516, 585, 761, 840, 861, 1063
BshVI ATCGAT 2 cut(s) 424, 681
BsiHKCI CYCGRG 2 cut(s) 338, 1244
BsiSI CCGG 3 cut(s) 225, 255, 1264
BslI CCNNNNNNNGG 5 cut(s) 231, 412, 895, 1064, 1294
BsoBI CYCGRG 2 cut(s) 338, 1244
Bsp120I GGGCCC 1 cut(s) 885
Bsp1286I GDGCHC 1 cut(s) 889
Bsp143I GATC 4 cut(s) 496, 640, 652, 1092
Bsp1720I GCTNAGC 1 cut(s) 546
BspACI CCGC 7 cut(s) 115, 133, 381, 514, 793, 838, 896
BspCNI CTCAG 3 cut(s) 173, 403, 559
BspDI ATCGAT 2 cut(s) 424, 681
BspFNI CGCG 8 cut(s) 115, 381, 516, 585, 761, 840, 861, 1063
BspLI GGNNCC 4 cut(s) 886, 887, 900, 1288
BspMAI CTGCAG 1 cut(s) 1232
BspMI ACCTGC 2 cut(s) 80, 1221
BspOI GCTAGC 1 cut(s) 1377
BspPI GGATC 3 cut(s) 635, 647, 1087
BspQI GCTCTTC 1 cut(s) 727
BspTI CTTAAG 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 3 cut(s) 1007, 1188, 1204
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 6 cut(s) 182, 183, 657, 1052, 1245, 1264
BssMI GATC 4 cut(s) 496, 640, 652, 1092
BssT1I CCWWGG 1 cut(s) 1052
Bst2UI CCWGG 2 cut(s) 184, 413
Bst4CI ACNGT 3 cut(s) 192, 263, 1004
Bst6I CTCTTC 2 cut(s) 727, 1116
BstAFI CTTAAG 1 cut(s) 205
BstC8I GCNNGC 7 cut(s) 37, 552, 587, 630, 759, 1059, 1375
BstDEI CTNAG 5 cut(s) 160, 390, 546, 776, 903
BstDSI CCRYGG 1 cut(s) 657
BstEII GGTNACC 1 cut(s) 257
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 5 cut(s) 1026, 1095, 1096, 1317, 1326
BstFNI CGCG 8 cut(s) 115, 381, 516, 585, 761, 840, 861, 1063
BstHHI GCGC 6 cut(s) 585, 591, 763, 861, 1000, 1063
BstKTI GATC 4 cut(s) 499, 643, 655, 1095
BstMBI GATC 4 cut(s) 496, 640, 652, 1092
BstMWI GCNNNNNNNGC 5 cut(s) 138, 551, 893, 907, 1190
BstNI CCWGG 2 cut(s) 184, 413
BstNSI RCATGY 3 cut(s) 39, 58, 1019
BstPI GGTNACC 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 182, 411, 1263
BstSFI CTRYAG 1 cut(s) 1228
BstSLI GKGCMC 1 cut(s) 889
BstUI CGCG 8 cut(s) 115, 381, 516, 585, 761, 840, 861, 1063
BstV1I GCAGC 3 cut(s) 542, 1048, 1283
Bsu15I ATCGAT 2 cut(s) 424, 681
BsuI GTATCC 1 cut(s) 1250
BsuTUI ATCGAT 2 cut(s) 424, 681
BtgI CCRYGG 1 cut(s) 657
BtgZI GCGATG 2 cut(s) 64, 925
BtsCI GGATG 5 cut(s) 1026, 1095, 1096, 1317, 1326
BtsIMutI CAGTG 1 cut(s) 1195
BveI ACCTGC 2 cut(s) 80, 1221
Cac8I GCNNGC 7 cut(s) 37, 552, 587, 630, 759, 1059, 1375
CfoI GCGC 6 cut(s) 585, 591, 763, 861, 1000, 1063
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 8 cut(s) 478, 885, 886, 899, 942, 1004, 1261, 1286
ClaI ATCGAT 2 cut(s) 424, 681
CpoI CGGWCCG 1 cut(s) 1261
CseI GACGC 1 cut(s) 596
Csp6I GTAC 5 cut(s) 149, 188, 446, 712, 866
CspI CGGWCCG 1 cut(s) 1261
CviAII CATG 6 cut(s) 36, 55, 624, 929, 1016, 1279
CviQI GTAC 5 cut(s) 149, 188, 446, 712, 866
DdeI CTNAG 5 cut(s) 160, 390, 546, 776, 903
DpnI GATC 4 cut(s) 498, 642, 654, 1094
DpnII GATC 4 cut(s) 496, 640, 652, 1092
DraI TTTAAA 1 cut(s) 954
DriI GACNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 3 cut(s) 222, 552, 835
Eam1104I CTCTTC 2 cut(s) 727, 1116
Eam1105I GACNNNNNGTC 1 cut(s) 341
EarI CTCTTC 2 cut(s) 727, 1116
Eco130I CCWWGG 1 cut(s) 1052
Eco24I GRGCYC 1 cut(s) 889
Eco47I GGWCC 3 cut(s) 478, 1004, 1261
Eco57I CTGAAG 2 cut(s) 521, 1421
Eco88I CYCGRG 2 cut(s) 338, 1244
Eco91I GGTNACC 1 cut(s) 257
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoO109I RGGNCCY 3 cut(s) 885, 899, 1286
EcoO65I GGTNACC 1 cut(s) 257
EcoRII CCWGG 2 cut(s) 182, 411
EcoT14I CCWWGG 1 cut(s) 1052
EcoT22I ATGCAT 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 889
ErhI CCWWGG 1 cut(s) 1052
FaeI CATG 6 cut(s) 39, 58, 627, 932, 1019, 1282
FatI CATG 6 cut(s) 35, 54, 623, 928, 1015, 1278
FauI CCCGC 2 cut(s) 521, 889
Fnu4HI GCNGC 8 cut(s) 116, 133, 382, 531, 794, 838, 1037, 1272
FokI GGATG 5 cut(s) 1013, 1083, 1102, 1304, 1313
FriOI GRGCYC 1 cut(s) 889
Fsp4HI GCNGC 8 cut(s) 116, 133, 382, 531, 794, 838, 1037, 1272
FspBI CTAG 6 cut(s) 152, 251, 284, 671, 1253, 1374
GlaI GCGC 6 cut(s) 584, 590, 762, 860, 999, 1062
GluI GCNGC 8 cut(s) 116, 133, 382, 531, 794, 838, 1037, 1272
GsaI CCCAGC 1 cut(s) 948
GsuI CTGGAG 1 cut(s) 395
HapII CCGG 3 cut(s) 225, 255, 1264
HgaI GACGC 1 cut(s) 596
HhaI GCGC 6 cut(s) 585, 591, 763, 861, 1000, 1063
Hin1II CATG 6 cut(s) 39, 58, 627, 932, 1019, 1282
Hin6I GCGC 6 cut(s) 583, 589, 761, 859, 998, 1061
HinP1I GCGC 6 cut(s) 583, 589, 761, 859, 998, 1061
HinfI GANTC 6 cut(s) 336, 376, 386, 457, 696, 748
HpaII CCGG 3 cut(s) 225, 255, 1264
HphI GGTGA 3 cut(s) 269, 794, 1141
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 5 cut(s) 163, 375, 456, 501, 1261
Hpy188III TCNNGA 2 cut(s) 476, 664
Hpy8I GTNNAC 1 cut(s) 868
Hpy99I CGWCG 6 cut(s) 497, 612, 801, 927, 1136, 1295
HpyAV CCTTC 3 cut(s) 286, 630, 1171
HpyCH4III ACNGT 3 cut(s) 192, 263, 1004
HpyCH4IV ACGT 3 cut(s) 369, 492, 566
HpyCH4V TGCA 9 cut(s) 39, 75, 297, 431, 522, 530, 632, 1036, 1230
HpyF10VI GCNNNNNNNGC 5 cut(s) 138, 551, 893, 907, 1190
HpyF3I CTNAG 5 cut(s) 160, 390, 546, 776, 903
HpySE526I ACGT 3 cut(s) 369, 492, 566
Hsp92II CATG 6 cut(s) 39, 58, 627, 932, 1019, 1282
HspAI GCGC 6 cut(s) 583, 589, 761, 859, 998, 1061
Kzo9I GATC 4 cut(s) 496, 640, 652, 1092
LguI GCTCTTC 1 cut(s) 727
LmnI GCTCC 4 cut(s) 177, 227, 414, 1297
Lsp1109I GCAGC 3 cut(s) 542, 1048, 1283
LweI GCATC 5 cut(s) 84, 570, 897, 1326, 1398
MaeI CTAG 6 cut(s) 152, 251, 284, 671, 1253, 1374
MaeII ACGT 3 cut(s) 369, 492, 566
MaeIII GTNAC 4 cut(s) 42, 257, 661, 1217
MalI GATC 4 cut(s) 498, 642, 654, 1094
MboI GATC 4 cut(s) 496, 640, 652, 1092
MboII GAAGA 9 cut(s) 187, 744, 757, 818, 998, 1098, 1103, 1414, 1417
MhlI GDGCHC 1 cut(s) 889
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 4 cut(s) 330, 482, 766, 1322
MluNI TGGCCA 1 cut(s) 554
MlyI GAGTC 2 cut(s) 330, 380
MmeI TCCRAC 1 cut(s) 304
Mox20I TGGCCA 1 cut(s) 554
Mph1103I ATGCAT 1 cut(s) 299
MscI TGGCCA 1 cut(s) 554
MseI TTAA 3 cut(s) 206, 854, 953
MslI CAYNNNNRTG 1 cut(s) 1031
Msp20I TGGCCA 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 550
MspCI CTTAAG 1 cut(s) 205
MspI CCGG 3 cut(s) 225, 255, 1264
MspR9I CCNGG 3 cut(s) 184, 413, 1265
MvaI CCWGG 2 cut(s) 184, 413
MvnI CGCG 8 cut(s) 115, 381, 516, 585, 761, 840, 861, 1063
MwoI GCNNNNNNNGC 5 cut(s) 138, 551, 893, 907, 1190
NciI CCSGG 1 cut(s) 1265
NdeII GATC 4 cut(s) 496, 640, 652, 1092
NheI GCTAGC 1 cut(s) 1373
NlaIII CATG 6 cut(s) 39, 58, 627, 932, 1019, 1282
NlaIV GGNNCC 4 cut(s) 886, 887, 900, 1288
NmuCI GTSAC 2 cut(s) 257, 661
NsiI ATGCAT 1 cut(s) 299
NspI RCATGY 3 cut(s) 39, 58, 1019
PaeI GCATGC 1 cut(s) 39
PaeR7I CTCGAG 1 cut(s) 338
PaqCI CACCTGC 1 cut(s) 80
PasI CCCWGGG 1 cut(s) 183
PciI ACATGT 1 cut(s) 54
PciSI GCTCTTC 1 cut(s) 727
PfeI GAWTC 4 cut(s) 376, 457, 696, 748
PflFI GACNNNGTC 2 cut(s) 95, 491
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 8 cut(s) 117, 134, 383, 532, 795, 839, 1038, 1273
PleI GAGTC 2 cut(s) 330, 380
PpsI GAGTC 2 cut(s) 330, 380
PscI ACATGT 1 cut(s) 54
PshBI ATTAAT 1 cut(s) 854
PsiI TTATAA 2 cut(s) 329, 401
Psp6I CCWGG 2 cut(s) 182, 411
PspEI GGTNACC 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 2 cut(s) 182, 411
PspN4I GGNNCC 4 cut(s) 886, 887, 900, 1288
PspOMI GGGCCC 1 cut(s) 885
PspPI GGNCC 8 cut(s) 478, 885, 886, 899, 942, 1004, 1261, 1286
PspXI VCTCGAGB 1 cut(s) 338
PstI CTGCAG 1 cut(s) 1232
PsyI GACNNNGTC 2 cut(s) 95, 491
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 5 cut(s) 150, 189, 447, 713, 867
RsaNI GTAC 5 cut(s) 149, 188, 446, 712, 866
RseI CAYNNNNRTG 1 cut(s) 1031
Rsr2I CGGWCCG 1 cut(s) 1261
RsrII CGGWCCG 1 cut(s) 1261
SapI GCTCTTC 1 cut(s) 727
SaqAI TTAA 3 cut(s) 206, 854, 953
SatI GCNGC 8 cut(s) 116, 133, 382, 531, 794, 838, 1037, 1272
Sau3AI GATC 4 cut(s) 496, 640, 652, 1092
Sau96I GGNCC 8 cut(s) 478, 885, 886, 899, 942, 1004, 1261, 1286
SchI GAGTC 2 cut(s) 330, 380
ScrFI CCNGG 3 cut(s) 184, 413, 1265
SduI GDGCHC 1 cut(s) 889
SfaNI GCATC 5 cut(s) 84, 570, 897, 1326, 1398
SfcI CTRYAG 1 cut(s) 1228
Sfr274I CTCGAG 1 cut(s) 338
SinI GGWCC 3 cut(s) 478, 1004, 1261
SlaI CTCGAG 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 1031
SmlI CTYRAG 2 cut(s) 205, 338
SmoI CTYRAG 2 cut(s) 205, 338
SphI GCATGC 1 cut(s) 39
Sse9I AATT 4 cut(s) 330, 482, 766, 1322
SsiI CCGC 7 cut(s) 115, 133, 381, 514, 793, 838, 896
SspMI CTAG 6 cut(s) 152, 251, 284, 671, 1253, 1374
StyD4I CCNGG 3 cut(s) 182, 411, 1263
StyI CCWWGG 1 cut(s) 1052
TaaI ACNGT 3 cut(s) 192, 263, 1004
TaiI ACGT 3 cut(s) 372, 495, 569
TaqI TCGA 8 cut(s) 198, 339, 424, 468, 495, 681, 1293, 1426
TaqII GACCGA 1 cut(s) 744
TasI AATT 4 cut(s) 330, 482, 766, 1322
TatI WGTACW 1 cut(s) 865
TauI GCSGC 5 cut(s) 118, 135, 384, 796, 840
TfiI GAWTC 4 cut(s) 376, 457, 696, 748
Tru1I TTAA 3 cut(s) 206, 854, 953
Tru9I TTAA 3 cut(s) 206, 854, 953
TscAI CASTG 1 cut(s) 1195
TseFI GTSAC 2 cut(s) 257, 661
TseI GCWGC 3 cut(s) 530, 1036, 1271
Tsp45I GTSAC 2 cut(s) 257, 661
TspDTI ATGAA 6 cut(s) 333, 552, 612, 1114, 1267, 1315
TspGWI ACGGA 2 cut(s) 1205, 1382
TspRI CASTG 1 cut(s) 1195
Tth111I GACNNNGTC 2 cut(s) 95, 491
Vha464I CTTAAG 1 cut(s) 205
VpaK11BI GGWCC 3 cut(s) 478, 1004, 1261
VspI ATTAAT 1 cut(s) 854
XagI CCTNNNNNAGG 1 cut(s) 1062
XceI RCATGY 3 cut(s) 39, 58, 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 338
XspI CTAG 6 cut(s) 152, 251, 284, 671, 1253, 1374
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.