RchiOBHm_Chr5g0069371

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000160
Physical Location & Seq
Forward (+)
75220110 .. 75220680
571 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34476

Sequence Viewer

Length: 516 bp
ATGCCAGCCGATGTCTTTGAGCTTGACGTGCCACTTGGTGATTGGAGATTTTACATAATCCAACACCTTTTGATGAAAACTGATGGCGGTGGGAGCCGAAAAATTAGAATGTTGTCTAGCAAGTTCACAATTAAAAATGGTGAACTGCTAAGGAAAAGTCCTGATGATGACCTTCTTCTTCGTTGCCTCGGCTCCGAAGATGCCCAGCTAGTAATGGCTGAAGTTCATGAGGGTATTTGCGGAGCACACCAGGCTGGGATAAAAATGAGATGGTTAATTAGGAGACATGGCTGCTACTGGCCAACTATTCTTAAAGACTGTATTGAGTATGCTCGAGGCTGTGCTCCATGCCAACTTCACGGGTCCATTCAGAGAGTTCCTGCTTTCCCCATGAATCCAATAGTGAAGCCATGGCCTTTTCAGGGCTGGGCAATGGATATAATTGGCCAAATATCTCCCCCATCTTCCAAACAGCACAGATGGATACTGGTAGCCACAGACTACTTTACAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

171

Amino Acids

19.49

Weight (kDa)

8.77

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 68 - 120 1.6e-08 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 87, 240
AcoI YGGCCR 2 cut(s) 299, 445
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 422
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 2 cut(s) 22, 208
AluI AGCT 2 cut(s) 22, 208
Alw21I GWGCWC 2 cut(s) 247, 346
Alw26I GTCTC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 3 cut(s) 299, 413, 445
ApeKI GCWGC 1 cut(s) 291
AspS9I GGNCC 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 50, 152
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 1 cut(s) 363
BalI TGGCCA 2 cut(s) 301, 447
Bbv12I GWGCWC 2 cut(s) 247, 346
BbvI GCAGC 1 cut(s) 278
BccI CCATC 4 cut(s) 77, 264, 469, 474
BciT130I CCWGG 1 cut(s) 251
BciVI GTATCC 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 277
BfaI CTAG 2 cut(s) 117, 209
BfuI GTATCC 1 cut(s) 477
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 333
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 363
BmiI GGNNCC 3 cut(s) 95, 193, 364
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 187, 410
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 302, 492
Bse3DI GCAATG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 187, 410
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 438
BseNI ACTGG 2 cut(s) 302, 492
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 3 cut(s) 204, 254, 426
BshFI GGCC 3 cut(s) 301, 415, 447
BsiHKAI GWGCWC 2 cut(s) 247, 346
BsiHKCI CYCGRG 1 cut(s) 333
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 277
BsnI GGCC 3 cut(s) 301, 415, 447
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 2 cut(s) 247, 346
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 2 cut(s) 87, 240
BspANI GGCC 3 cut(s) 301, 415, 447
BspHI TCATGA 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 95, 193, 364
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 2 cut(s) 302, 492
BssECI CCNNGG 2 cut(s) 187, 410
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 410
BstMAI GTCTC 1 cut(s) 277
BstMWI GCNNNNNNNGC 3 cut(s) 28, 93, 251
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 278
BsuI GTATCC 1 cut(s) 477
BsuRI GGCC 3 cut(s) 301, 415, 447
BtgI CCRYGG 1 cut(s) 410
BtrI CACGTC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 363
CviAII CATG 5 cut(s) 227, 287, 348, 391, 411
DdeI CTNAG 1 cut(s) 149
DraIII CACNNNGTG 1 cut(s) 38
EaeI YGGCCR 2 cut(s) 299, 445
Eco130I CCWWGG 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 363
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 410
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 5 cut(s) 230, 290, 351, 394, 414
FaiI YATR 8 cut(s) 56, 228, 288, 330, 349, 392, 412, 440
FatI CATG 5 cut(s) 226, 286, 347, 390, 410
Fnu4HI GCNGC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 2 cut(s) 117, 209
GluI GCNGC 1 cut(s) 292
GsaI CCCAGC 3 cut(s) 208, 258, 430
HaeIII GGCC 3 cut(s) 301, 415, 447
Hin1II CATG 5 cut(s) 230, 290, 351, 394, 414
HinfI GANTC 1 cut(s) 394
HphI GGTGA 2 cut(s) 50, 152
Hpy166II GTNNAC 2 cut(s) 126, 143
Hpy188I TCNGA 2 cut(s) 196, 372
Hpy188III TCNNGA 2 cut(s) 161, 227
Hpy8I GTNNAC 2 cut(s) 126, 143
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 93, 251
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 5 cut(s) 230, 290, 351, 394, 414
LmnI GCTCC 4 cut(s) 93, 197, 242, 349
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 117, 209
MaeII ACGT 1 cut(s) 27
MboII GAAGA 4 cut(s) 167, 170, 209, 456
MhlI GDGCHC 2 cut(s) 247, 346
MlsI TGGCCA 2 cut(s) 301, 447
MluCI AATT 4 cut(s) 102, 129, 276, 441
MluNI TGGCCA 2 cut(s) 301, 447
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 3 cut(s) 197, 223, 329
Mox20I TGGCCA 2 cut(s) 301, 447
MscI TGGCCA 2 cut(s) 301, 447
MseI TTAA 3 cut(s) 132, 275, 312
Msp20I TGGCCA 2 cut(s) 301, 447
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 28, 93, 251
NcoI CCATGG 1 cut(s) 410
NlaIII CATG 5 cut(s) 230, 290, 351, 394, 414
NlaIV GGNNCC 3 cut(s) 95, 193, 364
NmeAIII GCCGAG 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 333
PagI TCATGA 1 cut(s) 226
PfeI GAWTC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 249
PspFI CCCAGC 3 cut(s) 204, 254, 426
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 3 cut(s) 95, 193, 364
PspPI GGNCC 1 cut(s) 363
PspXI VCTCGAGB 1 cut(s) 333
SaqAI TTAA 3 cut(s) 132, 275, 312
SatI GCNGC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 363
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 2 cut(s) 247, 346
SetI ASST 5 cut(s) 24, 30, 69, 174, 210
SfaNI GCATC 1 cut(s) 190
Sfr274I CTCGAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 363
SlaI CTCGAG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 4 cut(s) 102, 129, 276, 441
SsiI CCGC 2 cut(s) 87, 240
SspMI CTAG 2 cut(s) 117, 209
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 334
TasI AATT 4 cut(s) 102, 129, 276, 441
TfiI GAWTC 1 cut(s) 394
Tru1I TTAA 3 cut(s) 132, 275, 312
Tru9I TTAA 3 cut(s) 132, 275, 312
TseI GCWGC 1 cut(s) 291
TspDTI ATGAA 3 cut(s) 89, 215, 407
VpaK11BI GGWCC 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XhoI CTCGAG 1 cut(s) 333
XspI CTAG 2 cut(s) 117, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.