Rw0G019440

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00869
OG0000160
Physical Location & Seq
Forward (+)
17782 .. 19836
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019440.1

Sequence Viewer

Length: 1821 bp
ATGCCTGAGCCAAGAAATCTACGCGAGTTAAAAAGTCTCCAAGGACGGCTTGCCTTTATTAGACAGTTTATATCAAACCTCGCAGGCCGTTGTCAGCCGTTTAGTCAACTTCTGAAGAAGGATGTGCCTTTCGTATGGGATGAAGCTTGCCATAACGCCTTTGAAAGCATAAAGAAGTACCTGGCAAACCCTCCAGTGTTAGGTGCACCCATCCTTGGGAAGCCGCTTATCCTCTACATTGCTGCTCAAGAGCGATCACTCGGAGCAATCCTAGCCCAAGAAAATGAAGCAAAGAAGGAGAGGGCGTTGTATTACTTGAGTCGAACTCTCACAGGATCAGAACTAAACTATCCGCCGATAGAGAAAATTTGTCTCGCACTCGTCTTCGCTATCCAAAAGTTAAGACATTACATGCAAGCTTACACAGTGCATCTAGTGGTGCGAGATGACCCAGTCAAGTTTGTTATGTCACAACCCGTCTTGACAGGGCGAATGGCAAAATGGGCAATACTTCTCAATCAGTATGAGATCATCTACATACCAGCCAAAGCGGTTAAAGGACAAGCATTGGCTGATTTCCTAGCGGATCATCCTATTCCTGCGGATTGGGAGATTTGTGATGAGTTGCCAAATGATGAAGTCTTTAATATAGAGGTCCTCCTTGCTTGGAAAATGTTCTTCGATGGGTCTTCACGAGCAGATGGGGCAGGAGCTGGTGTGAAAGAGGATTTAGTTCCTTATTTTCAGCTCGCCACACAACTCTTAAAGGGATTTGACGCTGTCACACTAACTCATGTGCCAAGAAAAGAAAATCAAACAGCAGACGCTTTGGCCAACTTAGCAGCAACTTTGGCACTATCAGAGGATGAAATCATACACCTTCCAATCTGCCAACGGTGGGTCGTACCTACAATCTCTGAGCTTTGGCATGAAGACTCCAATGTTGTCTCTGTTTACGTGATTGATGTGGATGACTGGAGTACCTTATCACGCTTTTTCTACTATAAGGAGACTCTTTATAGACGATCATTCAATGGATTGCTTCTTAGATGTCTGGGGAAAGAGGAAGCTACTAAGGCTATGGAGGAAGCTCATTCAGGAGTATGCGGAGCTCACCAGTCAGGTCCTAAGCTCCATTTTCAAGTGAAGAGGATGGGTTACTATTGGCCCACTATGGTTAAAGATTGCATGGAGTATGCACAAAGGTGTCAAGCTTGCCAGTTTCATGCAAACTTCATCCATCAACCACCAGAGCTGTTGCATCCAACGATTGCTTCCTACCCCTTCGATGTGTGGGGACTTGATGCTGTTGAGCCCATAATTCTGAAATCCTCCACCAATCACTCATACATTCTAGCGGCTACGAATTCCTTTTCAAAGTGGGCAAAGGAGGTACCGCTTAAGGAAATAAAGAAAGAAAATGTTGTAGACTTCATCAAAGGGAATATCATTCAACGATATGGTGTTCCTCGCTGCATCATCACAGACAATGCCAAGTACTTTTCCAATAGTGCCATGGAGAAATTCTGTGAGAAATATCACTTCAAGTTACACTTTTCTTCTATGTACAACGCCCCTACAAATGGGTTGGCCGAAGCATTCAACAAGACATTGTGTAATATTTTGAAGAAAGTTGGCAGCAAAACAAAAAGGGATTGGCATGAAAGAATGGGCGAGGCGCTCTGGGCCTATAGAACGACATATCGAACTCCCACGAAAGCAACACCTTACTCCCTTGTATATGGTGTTGAAGTTGTCTTACCCTTGGAGAAACAAATTCCATCTCTGAGGATTCCTTTGCAAGAAGGTCTAACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

606

Amino Acids

69.01

Weight (kDa)

8.08

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 46 - 143 1e-24 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 74 - 175 9.8e-25 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 354 - 408 2.1e-08 Integrase zinc binding domain
rve PF00665 428 - 524 7.8e-08 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1393
AccB1I GGYRCC 1 cut(s) 1393
AccI GTMKAC 1 cut(s) 1428
AccII CGCG 1 cut(s) 24
AciI CCGC 8 cut(s) 224, 353, 551, 584, 602, 1107, 1358, 1397
AclWI GGATC 2 cut(s) 343, 594
AcoI YGGCCR 2 cut(s) 831, 1590
AcsI RAATTY 4 cut(s) 366, 1366, 1523, 1776
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 6 cut(s) 179, 906, 982, 1395, 1499, 1568
AfiI CCNNNNNNNGG 5 cut(s) 200, 215, 216, 898, 1583
AflII CTTAAG 1 cut(s) 1400
AgsI TTSAA 9 cut(s) 164, 1033, 1142, 1377, 1454, 1546, 1603, 1627, 1751
AjnI CCWGG 1 cut(s) 180
AjuI GAANNNNNNNTTGG 2 cut(s) 1258, 1290
AleI CACNNNNGTG 1 cut(s) 1204
Alw21I GWGCWC 2 cut(s) 208, 1114
Alw26I GTCTC 4 cut(s) 41, 377, 952, 1004
Alw44I GTGCAC 1 cut(s) 204
AlwI GGATC 2 cut(s) 343, 594
AlwNI CAGNNNCTG 1 cut(s) 713
AoxI GGCC 5 cut(s) 85, 831, 1166, 1590, 1686
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 4 cut(s) 242, 842, 1473, 1638
ApoI RAATTY 4 cut(s) 366, 1366, 1523, 1776
Asp700I GAANNNNTTC 1 cut(s) 674
Asp718I GGTACC 1 cut(s) 1393
AspLEI GCGC 1 cut(s) 1681
AspS9I GGNCC 4 cut(s) 655, 1124, 1167, 1686
AsuHPI GGTGA 1 cut(s) 1106
AvaII GGWCC 2 cut(s) 655, 1124
BaeGI GKGCMC 1 cut(s) 208
BaeI ACNNNNGTAYC 2 cut(s) 964, 997
BalI TGGCCA 1 cut(s) 833
BanI GGYRCC 1 cut(s) 1393
BanII GRGCYC 2 cut(s) 1114, 1317
BarI GAAGNNNNNNTAC 2 cut(s) 1743, 1775
BauI CACGAG 1 cut(s) 693
BbsI GAAGAC 3 cut(s) 376, 681, 939
Bbv12I GWGCWC 2 cut(s) 208, 1114
BbvI GCAGC 4 cut(s) 229, 854, 1460, 1650
BccI CCATC 6 cut(s) 218, 677, 695, 1147, 1248, 1789
BceAI ACGGC 3 cut(s) 62, 72, 82
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 4 cut(s) 41, 377, 952, 1004
BfaI CTAG 4 cut(s) 272, 434, 581, 1355
BfmI CTRYAG 1 cut(s) 1690
BfoI RGCGCY 1 cut(s) 1682
BfrI CTTAAG 1 cut(s) 1400
BisI GCNGC 6 cut(s) 224, 243, 843, 1359, 1474, 1639
BlsI GCNGC 6 cut(s) 225, 244, 844, 1360, 1475, 1640
BmcAI AGTACT 1 cut(s) 1499
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 655, 1124
BmgT120I GGNCC 4 cut(s) 655, 1124, 1167, 1686
BmiI GGNNCC 1 cut(s) 1395
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 4 cut(s) 439, 1270, 1294, 1485
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 3 cut(s) 376, 681, 939
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpmI CTGGAG 2 cut(s) 177, 997
Bpu10I CCTNAGC 2 cut(s) 6, 1128
BpuEI CTTGAG 2 cut(s) 231, 337
BsaAI YACGTR 1 cut(s) 958
BsaJI CCNNGG 4 cut(s) 40, 214, 1515, 1764
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 702, 732
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 215, 216, 898, 1583
Bse1I ACTGG 5 cut(s) 194, 452, 980, 1117, 1219
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 4 cut(s) 40, 214, 1515, 1764
BseGI GGATG 9 cut(s) 127, 145, 210, 589, 871, 976, 1158, 1236, 1261
BseLI CCNNNNNNNGG 5 cut(s) 200, 215, 216, 898, 1583
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 2 cut(s) 909, 1778
BseNI ACTGG 5 cut(s) 194, 452, 980, 1117, 1219
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 4 cut(s) 229, 854, 1460, 1650
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 5 cut(s) 87, 833, 1168, 1592, 1688
BshNI GGYRCC 1 cut(s) 1393
BsiHKAI GWGCWC 2 cut(s) 208, 1114
BslFI GGGAC 1 cut(s) 1311
BslI CCNNNNNNNGG 5 cut(s) 200, 215, 216, 898, 1583
BsmAI GTCTC 4 cut(s) 41, 377, 952, 1004
BsmFI GGGAC 1 cut(s) 1311
BsmI GAATGC 1 cut(s) 1598
BsnI GGCC 5 cut(s) 87, 833, 1168, 1592, 1688
Bsp1286I GDGCHC 3 cut(s) 208, 1114, 1317
Bsp1407I TGTACA 1 cut(s) 1566
Bsp143I GATC 5 cut(s) 254, 335, 528, 586, 1025
Bsp19I CCATGG 1 cut(s) 1515
BspACI CCGC 8 cut(s) 224, 353, 551, 584, 602, 1107, 1358, 1397
BspANI GGCC 5 cut(s) 87, 833, 1168, 1592, 1688
BspCNI CTCAG 2 cut(s) 910, 1779
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 1395
BspPI GGATC 2 cut(s) 343, 594
BspT107I GGYRCC 1 cut(s) 1393
BspTI CTTAAG 1 cut(s) 1400
BsrDI GCAATG 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 1566
BsrI ACTGG 5 cut(s) 194, 452, 980, 1117, 1219
BssECI CCNNGG 4 cut(s) 40, 214, 1515, 1764
BssMI GATC 5 cut(s) 254, 335, 528, 586, 1025
BssSI CACGAG 1 cut(s) 693
BssT1I CCWWGG 4 cut(s) 40, 214, 1515, 1764
Bst2BI CACGAG 1 cut(s) 693
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 3 cut(s) 66, 427, 897
Bst6I CTCTTC 1 cut(s) 1142
BstAFI CTTAAG 1 cut(s) 1400
BstAUI TGTACA 1 cut(s) 1566
BstBAI YACGTR 1 cut(s) 958
BstC8I GCNNGC 6 cut(s) 51, 85, 148, 417, 750, 1216
BstDEI CTNAG 7 cut(s) 6, 838, 918, 1046, 1074, 1128, 1787
BstDSI CCRYGG 1 cut(s) 1515
BstF5I GGATG 9 cut(s) 127, 145, 210, 589, 871, 976, 1158, 1236, 1261
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 1682
BstHHI GCGC 1 cut(s) 1681
BstKTI GATC 5 cut(s) 257, 338, 531, 589, 1028
BstMAI GTCTC 4 cut(s) 41, 377, 952, 1004
BstMBI GATC 5 cut(s) 254, 335, 528, 586, 1025
BstMWI GCNNNNNNNGC 7 cut(s) 272, 503, 704, 839, 851, 1076, 1685
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 1690
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 4 cut(s) 229, 854, 1460, 1650
BstV2I GAAGAC 3 cut(s) 376, 681, 939
BsuRI GGCC 5 cut(s) 87, 833, 1168, 1592, 1688
BtgI CCRYGG 1 cut(s) 1515
BtsCI GGATG 9 cut(s) 127, 145, 210, 589, 871, 976, 1158, 1236, 1261
BtsIMutI CAGTG 2 cut(s) 201, 432
Cac8I GCNNGC 6 cut(s) 51, 85, 148, 417, 750, 1216
CaiI CAGNNNCTG 1 cut(s) 713
CfoI GCGC 1 cut(s) 1681
Cfr13I GGNCC 4 cut(s) 655, 1124, 1167, 1686
CseI GACGC 2 cut(s) 785, 833
Csp6I GTAC 6 cut(s) 178, 905, 981, 1394, 1498, 1567
CviAII CATG 7 cut(s) 412, 794, 929, 1189, 1226, 1516, 1661
CviQI GTAC 6 cut(s) 178, 905, 981, 1394, 1498, 1567
DdeI CTNAG 7 cut(s) 6, 838, 918, 1046, 1074, 1128, 1787
DpnI GATC 5 cut(s) 256, 337, 530, 588, 1027
DpnII GATC 5 cut(s) 254, 335, 528, 586, 1025
EaeI YGGCCR 2 cut(s) 831, 1590
Eam1104I CTCTTC 1 cut(s) 1142
EarI CTCTTC 1 cut(s) 1142
EciI GGCGGA 1 cut(s) 342
Ecl136II GAGCTC 1 cut(s) 1112
Eco130I CCWWGG 4 cut(s) 40, 214, 1515, 1764
Eco24I GRGCYC 2 cut(s) 1114, 1317
Eco47I GGWCC 2 cut(s) 655, 1124
Eco53kI GAGCTC 1 cut(s) 1112
Eco57I CTGAAG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 1112
EcoO109I RGGNCCY 2 cut(s) 655, 1124
EcoRI GAATTC 1 cut(s) 1366
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 4 cut(s) 40, 214, 1515, 1764
EcoT38I GRGCYC 2 cut(s) 1114, 1317
ErhI CCWWGG 4 cut(s) 40, 214, 1515, 1764
FaeI CATG 7 cut(s) 415, 797, 932, 1192, 1229, 1519, 1664
FalI AAGNNNNNCTT 4 cut(s) 33, 65, 1538, 1570
FaqI GGGAC 1 cut(s) 1311
FatI CATG 7 cut(s) 411, 793, 928, 1188, 1225, 1515, 1660
FblI GTMKAC 1 cut(s) 1428
Fnu4HI GCNGC 6 cut(s) 224, 243, 843, 1359, 1474, 1639
FokI GGATG 9 cut(s) 134, 152, 197, 576, 878, 983, 1165, 1223, 1248
FriOI GRGCYC 2 cut(s) 1114, 1317
Fsp4HI GCNGC 6 cut(s) 224, 243, 843, 1359, 1474, 1639
FspBI CTAG 4 cut(s) 272, 434, 581, 1355
GlaI GCGC 1 cut(s) 1680
GluI GCNGC 6 cut(s) 224, 243, 843, 1359, 1474, 1639
GsuI CTGGAG 2 cut(s) 177, 997
HaeII RGCGCY 1 cut(s) 1682
HaeIII GGCC 5 cut(s) 87, 833, 1168, 1592, 1688
HgaI GACGC 2 cut(s) 785, 833
HhaI GCGC 1 cut(s) 1681
Hin1II CATG 7 cut(s) 415, 797, 932, 1192, 1229, 1519, 1664
Hin6I GCGC 1 cut(s) 1679
HinP1I GCGC 1 cut(s) 1679
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HindIII AAGCTT 3 cut(s) 144, 417, 1212
HinfI GANTC 4 cut(s) 319, 935, 1012, 1792
HphI GGTGA 1 cut(s) 1106
Hpy166II GTNNAC 4 cut(s) 107, 206, 955, 1429
Hpy188I TCNGA 7 cut(s) 114, 263, 340, 862, 919, 1326, 1788
Hpy188III TCNNGA 4 cut(s) 248, 481, 693, 1098
Hpy8I GTNNAC 4 cut(s) 107, 206, 955, 1429
HpyAV CCTTC 5 cut(s) 112, 289, 890, 1294, 1799
HpyCH4III ACNGT 3 cut(s) 66, 427, 897
HpyCH4IV ACGT 1 cut(s) 957
HpyCH4V TGCA 9 cut(s) 206, 415, 430, 1188, 1199, 1229, 1261, 1476, 1801
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 503, 704, 839, 851, 1076, 1685
HpyF3I CTNAG 7 cut(s) 6, 838, 918, 1046, 1074, 1128, 1787
HpySE526I ACGT 1 cut(s) 957
Hsp92II CATG 7 cut(s) 415, 797, 932, 1192, 1229, 1519, 1664
HspAI GCGC 1 cut(s) 1679
KpnI GGTACC 1 cut(s) 1397
Kzo9I GATC 5 cut(s) 254, 335, 528, 586, 1025
LmnI GCTCC 4 cut(s) 263, 710, 1109, 1137
Lsp1109I GCAGC 4 cut(s) 229, 854, 1460, 1650
LweI GCATC 4 cut(s) 439, 1270, 1294, 1485
MaeI CTAG 4 cut(s) 272, 434, 581, 1355
MaeII ACGT 1 cut(s) 957
MaeIII GTNAC 4 cut(s) 468, 781, 1157, 1548
MalI GATC 5 cut(s) 256, 337, 530, 588, 1027
MboI GATC 5 cut(s) 254, 335, 528, 586, 1025
MboII GAAGA 8 cut(s) 127, 376, 670, 681, 944, 1159, 1551, 1639
MhlI GDGCHC 3 cut(s) 208, 1114, 1317
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 5 cut(s) 366, 1320, 1366, 1523, 1776
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 3 cut(s) 328, 929, 1006
MmeI TCCRAC 1 cut(s) 1289
Mox20I TGGCCA 1 cut(s) 833
MroXI GAANNNNTTC 1 cut(s) 674
MscI TGGCCA 1 cut(s) 833
MseI TTAA 8 cut(s) 29, 401, 555, 645, 764, 1179, 1401, 1819
MslI CAYNNNNRTG 1 cut(s) 1204
Msp20I TGGCCA 1 cut(s) 833
MspCI CTTAAG 1 cut(s) 1400
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 1598
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 7 cut(s) 272, 503, 704, 839, 851, 1076, 1685
NcoI CCATGG 1 cut(s) 1515
NdeII GATC 5 cut(s) 254, 335, 528, 586, 1025
NlaIII CATG 7 cut(s) 415, 797, 932, 1192, 1229, 1519, 1664
NlaIV GGNNCC 1 cut(s) 1395
NmuCI GTSAC 2 cut(s) 468, 781
NspI RCATGY 1 cut(s) 415
OliI CACNNNNGTG 1 cut(s) 1204
PctI GAATGC 1 cut(s) 1598
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 1 cut(s) 1792
PflFI GACNNNGTC 2 cut(s) 452, 779
PkrI GCNGC 6 cut(s) 225, 244, 844, 1360, 1475, 1640
PleI GAGTC 3 cut(s) 327, 929, 1006
PpsI GAGTC 3 cut(s) 327, 929, 1006
Ppu21I YACGTR 1 cut(s) 958
PpuMI RGGWCCY 2 cut(s) 655, 1124
Psp124BI GAGCTC 1 cut(s) 1114
Psp5II RGGWCCY 2 cut(s) 655, 1124
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 1395
PspPI GGNCC 4 cut(s) 655, 1124, 1167, 1686
PspPPI RGGWCCY 2 cut(s) 655, 1124
PstNI CAGNNNCTG 1 cut(s) 713
PsyI GACNNNGTC 2 cut(s) 452, 779
RsaI GTAC 6 cut(s) 179, 906, 982, 1395, 1499, 1568
RsaNI GTAC 6 cut(s) 178, 905, 981, 1394, 1498, 1567
RseI CAYNNNNRTG 1 cut(s) 1204
SacI GAGCTC 1 cut(s) 1114
SaqAI TTAA 8 cut(s) 29, 401, 555, 645, 764, 1179, 1401, 1819
SatI GCNGC 6 cut(s) 224, 243, 843, 1359, 1474, 1639
Sau3AI GATC 5 cut(s) 254, 335, 528, 586, 1025
Sau96I GGNCC 4 cut(s) 655, 1124, 1167, 1686
ScaI AGTACT 1 cut(s) 1499
SchI GAGTC 3 cut(s) 328, 929, 1006
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 3 cut(s) 208, 1114, 1317
SfaNI GCATC 4 cut(s) 439, 1270, 1294, 1485
SfcI CTRYAG 1 cut(s) 1690
SinI GGWCC 2 cut(s) 655, 1124
SmiMI CAYNNNNRTG 1 cut(s) 1204
SmlI CTYRAG 3 cut(s) 246, 316, 1400
SmoI CTYRAG 3 cut(s) 246, 316, 1400
Sse9I AATT 5 cut(s) 366, 1320, 1366, 1523, 1776
SsiI CCGC 8 cut(s) 224, 353, 551, 584, 602, 1107, 1358, 1397
SspI AATATT 1 cut(s) 1621
SspMI CTAG 4 cut(s) 272, 434, 581, 1355
SstI GAGCTC 1 cut(s) 1114
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 4 cut(s) 40, 214, 1515, 1764
TaaI ACNGT 3 cut(s) 66, 427, 897
TaiI ACGT 1 cut(s) 960
TaqI TCGA 4 cut(s) 322, 681, 1287, 1705
TasI AATT 5 cut(s) 366, 1320, 1366, 1523, 1776
TatI WGTACW 2 cut(s) 1497, 1566
TauI GCSGC 2 cut(s) 226, 1361
TfiI GAWTC 1 cut(s) 1792
Tru1I TTAA 8 cut(s) 29, 401, 555, 645, 764, 1179, 1401, 1819
Tru9I TTAA 8 cut(s) 29, 401, 555, 645, 764, 1179, 1401, 1819
TscAI CASTG 2 cut(s) 201, 432
TseFI GTSAC 2 cut(s) 468, 781
TseI GCWGC 4 cut(s) 242, 842, 1473, 1638
Tsp45I GTSAC 2 cut(s) 468, 781
TspDTI ATGAA 9 cut(s) 156, 300, 651, 882, 945, 1214, 1225, 1423, 1677
TspRI CASTG 2 cut(s) 201, 432
Tth111I GACNNNGTC 2 cut(s) 452, 779
Vha464I CTTAAG 1 cut(s) 1400
VneI GTGCAC 1 cut(s) 204
VpaK11BI GGWCC 2 cut(s) 655, 1124
XapI RAATTY 4 cut(s) 366, 1366, 1523, 1776
XceI RCATGY 1 cut(s) 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 1513
XmiI GTMKAC 1 cut(s) 1428
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 4 cut(s) 272, 434, 581, 1355
ZrmI AGTACT 1 cut(s) 1499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.