Rroxscaffold_177G00434330

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000177
OG0000160
Physical Location & Seq
Forward (+)
257575 .. 258009
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_177G00434330.1

Sequence Viewer

Length: 372 bp
ATGAACCCGATCTTCCACGATATCCCGGGGAAGATTCTAGAAGTTTACATCGATGACGTAGTTGTGAAGTCTCGGAAGAGAGGCGACCACATCACGGATCTCGTAAAGCAAGGGACTTTCGGGATTCATTGTCCATCGAGAGGAATTGAGGTCCTCGAAGATAAGGCAAGCGCAGTTATTAATGCATCCCCCCCCGCGAACGAAAAGGAATTGCAGCGTTTGCCGGGTAAGATCAACTTTCCGAGACGTTTCATCTCCACCCCGTGGGTAAAACCCGGGCCCTTCTCTCCATTGCCGAAGCCGCAGGTCGAGCGAGTTTGTGTGGGAGCCCTAAACACCAAGAGGCTTTCGATAGGATCAAAGCCTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

9.74

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 1 cut(s) 197
AciI CCGC 2 cut(s) 195, 302
AclWI GGATC 2 cut(s) 105, 364
AdeI CACNNNGTG 1 cut(s) 264
AfiI CCNNNNNNNGG 3 cut(s) 94, 140, 264
Alw26I GTCTC 2 cut(s) 75, 238
AlwI GGATC 2 cut(s) 105, 364
Ama87I CYCGRG 2 cut(s) 25, 275
AoxI GGCC 1 cut(s) 278
ApaI GGGCCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 214
AseI ATTAAT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 151, 278, 279
AsuC2I CCSGG 5 cut(s) 26, 27, 225, 276, 277
AvaI CYCGRG 2 cut(s) 25, 275
AvaII GGWCC 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 282
BanII GRGCYC 2 cut(s) 282, 331
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 142
BcnI CCSGG 5 cut(s) 26, 27, 225, 276, 277
BcoDI GTCTC 2 cut(s) 75, 238
BfaI CTAG 2 cut(s) 38, 370
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 2 cut(s) 215, 302
BlsI GCNGC 2 cut(s) 216, 303
Bme1390I CCNGG 5 cut(s) 26, 27, 225, 276, 277
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 2 cut(s) 25, 275
BmgT120I GGNCC 3 cut(s) 151, 278, 279
BmiI GGNNCC 2 cut(s) 280, 328
BmrFI CCNGG 5 cut(s) 26, 27, 225, 276, 277
BmsI GCATC 1 cut(s) 194
BpuMI CCSGG 5 cut(s) 26, 27, 225, 276, 277
Bsa29I ATCGAT 1 cut(s) 51
BsaJI CCNNGG 4 cut(s) 25, 26, 263, 275
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 140, 264
Bse3DI GCAATG 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 4 cut(s) 25, 26, 263, 275
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 3 cut(s) 94, 140, 264
BseMI GCAATG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 280
BshVI ATCGAT 1 cut(s) 51
BsiHKCI CYCGRG 2 cut(s) 25, 275
BsiSI CCGG 3 cut(s) 26, 224, 276
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 94, 140, 264
BsmAI GTCTC 2 cut(s) 75, 238
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 1 cut(s) 280
BsoBI CYCGRG 2 cut(s) 25, 275
Bsp120I GGGCCC 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 282, 331
Bsp143I GATC 4 cut(s) 9, 97, 231, 356
BspACI CCGC 2 cut(s) 195, 302
BspANI GGCC 1 cut(s) 280
BspDI ATCGAT 1 cut(s) 51
BspFNI CGCG 1 cut(s) 197
BspLI GGNNCC 2 cut(s) 280, 328
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 2 cut(s) 105, 364
BsrDI GCAATG 1 cut(s) 290
BssECI CCNNGG 4 cut(s) 25, 26, 263, 275
BssMI GATC 4 cut(s) 9, 97, 231, 356
Bst6I CTCTTC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 169
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 4 cut(s) 12, 100, 234, 359
BstMAI GTCTC 2 cut(s) 75, 238
BstMBI GATC 4 cut(s) 9, 97, 231, 356
BstMWI GCNNNNNNNGC 3 cut(s) 220, 301, 310
BstSCI CCNGG 5 cut(s) 24, 25, 223, 274, 275
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 1 cut(s) 280
BsuTUI ATCGAT 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 169
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 151, 278, 279
Cfr9I CCCGGG 2 cut(s) 25, 275
ClaI ATCGAT 1 cut(s) 51
CviJI RGCY 5 cut(s) 280, 301, 329, 346, 364
CviKI_1 RGCY 5 cut(s) 280, 301, 329, 346, 364
DpnI GATC 4 cut(s) 11, 99, 233, 358
DpnII GATC 4 cut(s) 9, 97, 231, 356
DraIII CACNNNGTG 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco24I GRGCYC 2 cut(s) 282, 331
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 151
Eco88I CYCGRG 2 cut(s) 25, 275
EcoO109I RGGNCCY 2 cut(s) 151, 279
EcoRV GATATC 1 cut(s) 22
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 2 cut(s) 282, 331
Esp3I CGTCTC 1 cut(s) 238
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 127
FauI CCCGC 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 215, 302
FokI GGATG 1 cut(s) 172
FriOI GRGCYC 2 cut(s) 282, 331
Fsp4HI GCNGC 2 cut(s) 215, 302
FspBI CTAG 2 cut(s) 38, 370
GlaI GCGC 1 cut(s) 172
GluI GCNGC 2 cut(s) 215, 302
HaeIII GGCC 1 cut(s) 280
HapII CCGG 3 cut(s) 26, 224, 276
HhaI GCGC 1 cut(s) 173
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 2 cut(s) 34, 124
HpaII CCGG 3 cut(s) 26, 224, 276
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 75, 243
Hpy188III TCNNGA 3 cut(s) 38, 121, 138
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 57, 247
HpyCH4V TGCA 2 cut(s) 185, 214
HpyF10VI GCNNNNNNNGC 3 cut(s) 220, 301, 310
HpySE526I ACGT 2 cut(s) 57, 247
HspAI GCGC 1 cut(s) 171
Kzo9I GATC 4 cut(s) 9, 97, 231, 356
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 4 cut(s) 39, 237, 289, 290
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 194
MaeI CTAG 2 cut(s) 38, 370
MaeII ACGT 2 cut(s) 57, 247
MalI GATC 4 cut(s) 11, 99, 233, 358
MboI GATC 4 cut(s) 9, 97, 231, 356
MboII GAAGA 4 cut(s) 4, 43, 88, 170
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 2 cut(s) 282, 331
MluCI AATT 2 cut(s) 144, 209
MnlI CCTC 5 cut(s) 74, 134, 142, 164, 336
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 1 cut(s) 180
MspI CCGG 3 cut(s) 26, 224, 276
MspR9I CCNGG 5 cut(s) 26, 27, 225, 276, 277
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 220, 301, 310
NciI CCSGG 5 cut(s) 26, 27, 225, 276, 277
NdeII GATC 4 cut(s) 9, 97, 231, 356
NlaIV GGNNCC 2 cut(s) 280, 328
NsiI ATGCAT 1 cut(s) 187
PfeI GAWTC 2 cut(s) 34, 124
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 2 cut(s) 216, 303
PpuMI RGGWCCY 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 280, 328
PspOMI GGGCCC 1 cut(s) 278
PspPI GGNCC 3 cut(s) 151, 278, 279
PspPPI RGGWCCY 1 cut(s) 151
PsuI RGATCY 1 cut(s) 97
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 215, 302
Sau3AI GATC 4 cut(s) 9, 97, 231, 356
Sau96I GGNCC 3 cut(s) 151, 278, 279
ScrFI CCNGG 5 cut(s) 26, 27, 225, 276, 277
SduI GDGCHC 2 cut(s) 282, 331
SetI ASST 5 cut(s) 60, 153, 250, 309, 371
SfaNI GCATC 1 cut(s) 194
SinI GGWCC 1 cut(s) 151
SmaI CCCGGG 2 cut(s) 27, 277
Sse9I AATT 2 cut(s) 144, 209
SsiI CCGC 2 cut(s) 195, 302
SspMI CTAG 2 cut(s) 38, 370
StyD4I CCNGG 5 cut(s) 24, 25, 223, 274, 275
TaiI ACGT 2 cut(s) 60, 250
TaqI TCGA 5 cut(s) 51, 137, 156, 309, 350
TasI AATT 2 cut(s) 144, 209
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 2 cut(s) 34, 124
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 17, 116, 241
TspGWI ACGGA 1 cut(s) 110
TspMI CCCGGG 2 cut(s) 25, 275
Van91I CCANNNNNTGG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 151
VspI ATTAAT 1 cut(s) 180
XbaI TCTAGA 1 cut(s) 37
XmaI CCCGGG 2 cut(s) 25, 275
XspI CTAG 2 cut(s) 38, 370
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.