Rw7G026870

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000160
Physical Location & Seq
Reverse (-)
34269553 .. 34271660
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026870.1

Sequence Viewer

Length: 1692 bp
ATGCTTAAAGCAAAAGTTCCCGAAGCAGACATACTTACAGATCACGAAAGGGCTGTTTTTCAGGAAGAACATGTAATGGAGGAGCCATCACGTGTCTCAGTCTTTCAACGCCTAGGGACGAACAATCCACCCCGCGTCCCAATCTTTCAGCGCTTGGAAACTCAAAAGCAACCCCGTGTCTCAGCTTTCCAGCGTTTGGGCAACACTTCTTCATTACCGTCCAACAAGTCACAAGCAAGCAAGAAATGGAAGGTTAAACGACACACAAGGGTGATCTTCAAAAAGACAGTGGATTCTAAGCCGGACAAAAACTTGGAAGAATCAGTGTCAGTGAACTGTGTTTCATTTGAAGACCAAGATCAGGCTCCAGAATTCATTGATACCGCCCAGCCTGCTCCCCCACAAATGGAGGATGGAGGACAAGCAACCATGGACGACCTCCAAGAGATCAACCTTGGGACAGCTGAGGACCCAAAGCCTATATTTGTGAGTGCTCTGTTGACACCAGATGAATTAAAAGGCTACAGATCTCTCCTCCAGGAATACAAAGATGTTTTCGCCTGGGGCTATCAAGACATGCCTGGTTTAGAACCAAAAGTGGCAGTTCACAAGTTAGCAGTCTCGGATCAGAAACGCTGGTATTGTCCCAGTAAGAAGAAGAACGGACAGATCCGTATCTGCGTTGACTATAGAGATCTCAACGACGCATGTCCAAAAGATGAGTTCCCGCTCCCAATTACAGAGTTACTGGTTGATGCTACAACGGGATATGGTGCCTTGTCCTTTATGGATGGTTTCTCTGGTTATAATCAGATCAAGATGGCACCCGAAGACGAAGAGCTCACAGCATTTCGTACACCGAAAGGGTACCGAGGAATAGAGATTGACCCCACAAAAATCAAGGCAATCAGAGAAATGCCTCCTCCTAGAAATTTGCGAGAGCTAAGAGGGTTACAGGGCAGACTGGCTTACATAAGGAGATTCATTTCAAACCTTTCTGGAAGATGCCAACCCTTCACAAGATTGATGAAGAAGGACGTCCCATTTGTATGGGATCAAACTTGCCAAAATGCCTTTGACAGCATCAAGGAGTACCTCCTCAAGCCTCCAGTGTTAATGGCACCTATCAAAGGAAAACCACTCATCCTCTATATTGCAGCACTCGAGCGATCTCTGGGAGCATTGCTTGCACAAAACAATGACGAGGGGAAAGAAAATGCTCTGTATTATCTGAGCAGGACACTTGTGGGGGCAGAACACAACTACACCCCCATCGAAAAGAAGTTACGACACTACATGCTCGCTCACAACATTACTCTGATCTCTAAAGCCGATCCACTCAGGTACTTAATGTCAAAGCCCGTGCTATCCGGACGCATGGCAAAATGGTCTTTGTTCCTATCAGAGTTTGATATCAAATACGTGTCTCAAAAAGCCATAAAAGGGCAAGCACTTGCTGATTTCTTAGCAGCACACCCTGTGCCTGATTGTATGGAACTACCAAAAGACCTGCCGGATGAAGAGGTTTTCTCAACAGAAACTTCCACATGGCAGCTTTATTTTGATGGGGCGGCTAGGAAAAGAGGAGCAGGAGCAGGCATCGTACTTATTACACCATCTGGGGGTTTAATCCCATACTCATTCTTCTCATGGCTATATGTTCGAATAACGTTGCAGAATACGAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

563

Amino Acids

63.8

Weight (kDa)

8.66

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 218 - 288 1.8e-07 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 351 - 429 9.4e-18 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 379 - 470 9.8e-16 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 807
AatII GACGTC 1 cut(s) 1041
Acc36I ACCTGC 1 cut(s) 1518
Acc65I GGTACC 1 cut(s) 867
AccB1I GGYRCC 4 cut(s) 773, 823, 867, 1120
AccB7I CCANNNNNTGG 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 730
AccII CGCG 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 1370
AciI CCGC 4 cut(s) 133, 384, 728, 1571
AclI AACGTT 1 cut(s) 1670
AclWI GGATC 4 cut(s) 633, 664, 1062, 1328
AcsI RAATTY 2 cut(s) 371, 931
AcvI CACGTG 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 1038
AdeI CACNNNGTG 1 cut(s) 1480
AfaI GTAC 5 cut(s) 856, 869, 1094, 1346, 1605
AfeI AGCGCT 1 cut(s) 152
AfiI CCNNNNNNNGG 6 cut(s) 196, 361, 406, 1130, 1443, 1622
AflIII ACRYGT 3 cut(s) 70, 91, 1422
AgsI TTSAA 4 cut(s) 107, 280, 350, 990
AjnI CCWGG 3 cut(s) 537, 560, 580
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 5 cut(s) 185, 464, 841, 943, 1555
AluI AGCT 5 cut(s) 185, 464, 841, 943, 1555
Alw21I GWGCWC 2 cut(s) 496, 843
Alw26I GTCTC 4 cut(s) 100, 184, 625, 1431
AlwI GGATC 4 cut(s) 633, 664, 1062, 1328
Ama87I CYCGRG 1 cut(s) 1163
Aor13HI TCCGGA 1 cut(s) 1370
Aor51HI AGCGCT 1 cut(s) 152
ApeKI GCWGC 3 cut(s) 1157, 1469, 1552
ApoI RAATTY 2 cut(s) 371, 931
ArsI GACNNNNNNTTYG 2 cut(s) 1028, 1060
Asp718I GGTACC 1 cut(s) 867
AspA2I CCTAGG 1 cut(s) 112
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 283
AsuII TTCGAA 1 cut(s) 1663
AvaI CYCGRG 1 cut(s) 1163
AvaII GGWCC 1 cut(s) 469
AvrII CCTAGG 1 cut(s) 112
BanI GGYRCC 4 cut(s) 773, 823, 867, 1120
BanII GRGCYC 1 cut(s) 843
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbrPI CACGTG 1 cut(s) 92
BbsI GAAGAC 2 cut(s) 357, 837
Bbv12I GWGCWC 2 cut(s) 496, 843
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 3 cut(s) 1169, 1481, 1564
BccI CCATC 7 cut(s) 94, 407, 785, 814, 1280, 1559, 1624
BciT130I CCWGG 3 cut(s) 539, 562, 582
BcoDI GTCTC 4 cut(s) 100, 184, 625, 1431
BfaI CTAG 3 cut(s) 113, 927, 1575
BfmI CTRYAG 2 cut(s) 523, 688
BfoI RGCGCY 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 1518
BglII AGATCT 2 cut(s) 527, 694
BisI GCNGC 4 cut(s) 1158, 1470, 1553, 1572
BlnI CCTAGG 1 cut(s) 112
BlsI GCNGC 4 cut(s) 1159, 1471, 1554, 1573
Bme1390I CCNGG 3 cut(s) 539, 562, 582
Bme18I GGWCC 1 cut(s) 469
BmeT110I CYCGRG 1 cut(s) 1163
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 7 cut(s) 84, 366, 471, 775, 825, 869, 1122
BmrFI CCNGG 3 cut(s) 539, 562, 582
BmrI ACTGGG 1 cut(s) 642
BmsI GCATC 4 cut(s) 745, 995, 1092, 1608
BmuI ACTGGG 1 cut(s) 642
BoxI GACNNNNGTC 1 cut(s) 708
BpiI GAAGAC 2 cut(s) 357, 837
BplI GAGNNNNNCTC 2 cut(s) 1514, 1546
BpmI CTGGAG 3 cut(s) 351, 521, 1092
Bpu10I CCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 1663
BpuEI CTTGAG 1 cut(s) 1085
BsaAI YACGTR 2 cut(s) 92, 1423
BsaBI GATNNNNATC 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 1038
BsaJI CCNNGG 5 cut(s) 112, 429, 454, 561, 871
BsaWI WCCGGW 1 cut(s) 1370
Bsc4I CCNNNNNNNGG 6 cut(s) 196, 361, 406, 1130, 1443, 1622
Bse1I ACTGG 4 cut(s) 648, 753, 969, 1109
Bse3DI GCAATG 1 cut(s) 1181
Bse8I GATNNNNATC 1 cut(s) 674
BseAI TCCGGA 1 cut(s) 1370
BseBI CCWGG 3 cut(s) 539, 562, 582
BseDI CCNNGG 5 cut(s) 112, 429, 454, 561, 871
BseGI GGATG 4 cut(s) 418, 796, 1143, 1522
BseJI GATNNNNATC 1 cut(s) 674
BseLI CCNNNNNNNGG 6 cut(s) 196, 361, 406, 1130, 1443, 1622
BseMI GCAATG 1 cut(s) 1181
BseMII CTCAG 5 cut(s) 111, 195, 456, 1223, 1354
BseNI ACTGG 4 cut(s) 648, 753, 969, 1109
BseRI GAGGAG 5 cut(s) 95, 524, 912, 1088, 1599
BseXI GCAGC 3 cut(s) 1169, 1481, 1564
BseYI CCCAGC 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 135
BshNI GGYRCC 4 cut(s) 773, 823, 867, 1120
BsiHKAI GWGCWC 2 cut(s) 496, 843
BsiHKCI CYCGRG 1 cut(s) 1163
BsiSI CCGG 3 cut(s) 302, 1371, 1514
BslFI GGGAC 5 cut(s) 122, 130, 472, 630, 1025
BslI CCNNNNNNNGG 6 cut(s) 196, 361, 406, 1130, 1443, 1622
BsmAI GTCTC 4 cut(s) 100, 184, 625, 1431
BsmFI GGGAC 5 cut(s) 122, 130, 472, 630, 1025
BsoBI CYCGRG 1 cut(s) 1163
Bsp119I TTCGAA 1 cut(s) 1663
Bsp1286I GDGCHC 2 cut(s) 496, 843
Bsp13I TCCGGA 1 cut(s) 1370
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 4 cut(s) 133, 384, 728, 1571
BspCNI CTCAG 5 cut(s) 110, 194, 457, 1224, 1353
BspEI TCCGGA 1 cut(s) 1370
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 7 cut(s) 84, 366, 471, 775, 825, 869, 1122
BspMI ACCTGC 1 cut(s) 1518
BspPI GGATC 4 cut(s) 633, 664, 1062, 1328
BspQI GCTCTTC 1 cut(s) 831
BspT104I TTCGAA 1 cut(s) 1663
BspT107I GGYRCC 4 cut(s) 773, 823, 867, 1120
BsrBI CCGCTC 1 cut(s) 730
BsrDI GCAATG 1 cut(s) 1181
BsrI ACTGG 4 cut(s) 648, 753, 969, 1109
BssECI CCNNGG 5 cut(s) 112, 429, 454, 561, 871
BssNI GRCGYC 1 cut(s) 1038
BssT1I CCWWGG 3 cut(s) 112, 429, 454
Bst2UI CCWGG 3 cut(s) 539, 562, 582
Bst4CI ACNGT 3 cut(s) 219, 289, 338
Bst6I CTCTTC 2 cut(s) 831, 1515
BstACI GRCGYC 1 cut(s) 1038
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstBAI YACGTR 2 cut(s) 92, 1423
BstBI TTCGAA 1 cut(s) 1663
BstC8I GCNNGC 6 cut(s) 238, 393, 1188, 1302, 1449, 1597
BstDEI CTNAG 8 cut(s) 97, 181, 297, 465, 944, 1232, 1340, 1465
BstDSI CCRYGG 1 cut(s) 429
BstENI CCTNNNNNAGG 1 cut(s) 1128
BstF5I GGATG 4 cut(s) 418, 796, 1143, 1522
BstFNI CGCG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstMAI GTCTC 4 cut(s) 100, 184, 625, 1431
BstMWI GCNNNNNNNGC 2 cut(s) 392, 1187
BstNI CCWGG 3 cut(s) 539, 562, 582
BstNSI RCATGY 4 cut(s) 74, 580, 711, 1300
BstPAI GACNNNNGTC 1 cut(s) 708
BstSCI CCNGG 3 cut(s) 537, 560, 580
BstSFI CTRYAG 2 cut(s) 523, 688
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 1169, 1481, 1564
BstV2I GAAGAC 2 cut(s) 357, 837
BstX2I RGATCY 3 cut(s) 527, 669, 694
BstXI CCANNNNNNTGG 1 cut(s) 1050
BstYI RGATCY 3 cut(s) 527, 669, 694
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 4 cut(s) 418, 796, 1143, 1522
BtsIMutI CAGTG 4 cut(s) 294, 330, 336, 1116
BveI ACCTGC 1 cut(s) 1518
Cac8I GCNNGC 6 cut(s) 238, 393, 1188, 1302, 1449, 1597
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 469
CseI GACGC 3 cut(s) 124, 713, 1383
Csp6I GTAC 5 cut(s) 855, 868, 1093, 1345, 1604
CviAII CATG 8 cut(s) 71, 430, 577, 708, 1297, 1378, 1548, 1650
CviQI GTAC 5 cut(s) 855, 868, 1093, 1345, 1604
DdeI CTNAG 8 cut(s) 97, 181, 297, 465, 944, 1232, 1340, 1465
DraIII CACNNNGTG 1 cut(s) 1480
Eam1104I CTCTTC 2 cut(s) 831, 1515
EarI CTCTTC 2 cut(s) 831, 1515
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 3 cut(s) 112, 429, 454
Eco24I GRGCYC 1 cut(s) 843
Eco32I GATATC 1 cut(s) 1414
Eco47I GGWCC 1 cut(s) 469
Eco47III AGCGCT 1 cut(s) 152
Eco53kI GAGCTC 1 cut(s) 841
Eco72I CACGTG 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 1163
EcoICRI GAGCTC 1 cut(s) 841
EcoNI CCTNNNNNAGG 1 cut(s) 1128
EcoO109I RGGNCCY 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 537, 560, 580
EcoRV GATATC 1 cut(s) 1414
EcoT14I CCWWGG 3 cut(s) 112, 429, 454
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 3 cut(s) 112, 429, 454
FaeI CATG 8 cut(s) 74, 433, 580, 711, 1300, 1381, 1551, 1653
FaqI GGGAC 5 cut(s) 122, 130, 472, 630, 1025
FatI CATG 8 cut(s) 70, 429, 576, 707, 1296, 1377, 1547, 1649
FauI CCCGC 2 cut(s) 140, 735
Fnu4HI GCNGC 4 cut(s) 1158, 1470, 1553, 1572
FokI GGATG 4 cut(s) 425, 803, 1130, 1529
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 4 cut(s) 1158, 1470, 1553, 1572
FspBI CTAG 3 cut(s) 113, 927, 1575
GlaI GCGC 1 cut(s) 152
GluI GCNGC 4 cut(s) 1158, 1470, 1553, 1572
GsaI CCCAGC 1 cut(s) 391
GsuI CTGGAG 3 cut(s) 351, 521, 1092
HaeII RGCGCY 1 cut(s) 154
HapII CCGG 3 cut(s) 302, 1371, 1514
HgaI GACGC 3 cut(s) 124, 713, 1383
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 1038
Hin1II CATG 8 cut(s) 74, 433, 580, 711, 1300, 1381, 1551, 1653
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 2 cut(s) 501, 685
HindII GTYRAC 2 cut(s) 501, 685
HinfI GANTC 3 cut(s) 293, 320, 981
HpaII CCGG 3 cut(s) 302, 1371, 1514
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 5 cut(s) 334, 501, 607, 685, 857
Hpy188I TCNGA 7 cut(s) 625, 630, 813, 911, 1233, 1320, 1405
Hpy188III TCNNGA 8 cut(s) 20, 44, 62, 368, 572, 817, 999, 1371
Hpy8I GTNNAC 5 cut(s) 334, 501, 607, 685, 857
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 3 cut(s) 244, 1024, 1027
HpyCH4III ACNGT 3 cut(s) 219, 289, 338
HpyCH4IV ACGT 4 cut(s) 91, 1038, 1422, 1670
HpyCH4V TGCA 3 cut(s) 1157, 1190, 1675
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 1187
HpyF3I CTNAG 8 cut(s) 97, 181, 297, 465, 944, 1232, 1340, 1465
HpySE526I ACGT 4 cut(s) 91, 1038, 1422, 1670
Hsp92I GRCGYC 1 cut(s) 1038
Hsp92II CATG 8 cut(s) 74, 433, 580, 711, 1300, 1381, 1551, 1653
HspAI GCGC 1 cut(s) 151
Kpn2I TCCGGA 1 cut(s) 1370
KpnI GGTACC 1 cut(s) 871
LguI GCTCTTC 1 cut(s) 831
LmnI GCTCC 7 cut(s) 82, 370, 400, 735, 1178, 1586, 1592
Lsp1109I GCAGC 3 cut(s) 1169, 1481, 1564
LweI GCATC 4 cut(s) 745, 995, 1092, 1608
MaeI CTAG 3 cut(s) 113, 927, 1575
MaeII ACGT 4 cut(s) 91, 1038, 1422, 1670
MaeIII GTNAC 4 cut(s) 228, 744, 951, 1284
MbiI CCGCTC 1 cut(s) 730
MflI RGATCY 3 cut(s) 527, 669, 694
MhlI GDGCHC 2 cut(s) 496, 843
MluCI AATT 4 cut(s) 371, 512, 735, 931
MmeI TCCRAC 1 cut(s) 246
MroI TCCGGA 1 cut(s) 1370
MseI TTAA 6 cut(s) 6, 255, 515, 1115, 1349, 1628
MslI CAYNNNNRTG 2 cut(s) 269, 1048
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 3 cut(s) 302, 1371, 1514
MspR9I CCNGG 3 cut(s) 539, 562, 582
MvaI CCWGG 3 cut(s) 539, 562, 582
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 392, 1187
NcoI CCATGG 1 cut(s) 429
NlaIII CATG 8 cut(s) 74, 433, 580, 711, 1300, 1381, 1551, 1653
NlaIV GGNNCC 7 cut(s) 84, 366, 471, 775, 825, 869, 1122
NmuCI GTSAC 1 cut(s) 228
NspI RCATGY 4 cut(s) 74, 580, 711, 1300
NspV TTCGAA 1 cut(s) 1663
OliI CACNNNNGTG 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 1163
PciI ACATGT 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 831
PfeI GAWTC 3 cut(s) 293, 320, 981
PflMI CCANNNNNTGG 1 cut(s) 196
PfoI TCCNGGA 1 cut(s) 537
PkrI GCNGC 4 cut(s) 1159, 1471, 1554, 1573
PmaCI CACGTG 1 cut(s) 92
PmlI CACGTG 1 cut(s) 92
Ppu21I YACGTR 2 cut(s) 92, 1423
PpuMI RGGWCCY 1 cut(s) 469
PscI ACATGT 1 cut(s) 70
PshAI GACNNNNGTC 1 cut(s) 708
PsiI TTATAA 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 1670
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 3 cut(s) 537, 560, 580
PspCI CACGTG 1 cut(s) 92
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 3 cut(s) 537, 560, 580
PspN4I GGNNCC 7 cut(s) 84, 366, 471, 775, 825, 869, 1122
PspPI GGNCC 1 cut(s) 469
PspPPI RGGWCCY 1 cut(s) 469
PspXI VCTCGAGB 1 cut(s) 1163
PsuI RGATCY 3 cut(s) 527, 669, 694
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 5 cut(s) 856, 869, 1094, 1346, 1605
RsaNI GTAC 5 cut(s) 855, 868, 1093, 1345, 1604
RseI CAYNNNNRTG 2 cut(s) 269, 1048
SacI GAGCTC 1 cut(s) 843
SapI GCTCTTC 1 cut(s) 831
SaqAI TTAA 6 cut(s) 6, 255, 515, 1115, 1349, 1628
SatI GCNGC 4 cut(s) 1158, 1470, 1553, 1572
Sau96I GGNCC 1 cut(s) 469
ScrFI CCNGG 3 cut(s) 539, 562, 582
SduI GDGCHC 2 cut(s) 496, 843
SfaNI GCATC 4 cut(s) 745, 995, 1092, 1608
SfcI CTRYAG 2 cut(s) 523, 688
Sfr274I CTCGAG 1 cut(s) 1163
SfuI TTCGAA 1 cut(s) 1663
SinI GGWCC 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 1163
SmiMI CAYNNNNRTG 2 cut(s) 269, 1048
SmlI CTYRAG 2 cut(s) 1100, 1163
SmoI CTYRAG 2 cut(s) 1100, 1163
Sse9I AATT 4 cut(s) 371, 512, 735, 931
SsiI CCGC 4 cut(s) 133, 384, 728, 1571
SspMI CTAG 3 cut(s) 113, 927, 1575
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 3 cut(s) 537, 560, 580
StyI CCWWGG 3 cut(s) 112, 429, 454
TaaI ACNGT 3 cut(s) 219, 289, 338
TaiI ACGT 4 cut(s) 94, 1041, 1425, 1673
TaqI TCGA 3 cut(s) 1164, 1275, 1663
TasI AATT 4 cut(s) 371, 512, 735, 931
TauI GCSGC 1 cut(s) 1574
TfiI GAWTC 3 cut(s) 293, 320, 981
Tru1I TTAA 6 cut(s) 6, 255, 515, 1115, 1349, 1628
Tru9I TTAA 6 cut(s) 6, 255, 515, 1115, 1349, 1628
TscAI CASTG 4 cut(s) 294, 330, 336, 1116
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 3 cut(s) 1157, 1469, 1552
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 7 cut(s) 201, 333, 364, 525, 973, 1043, 1533
TspGWI ACGGA 2 cut(s) 662, 678
TspRI CASTG 4 cut(s) 294, 330, 336, 1116
Van91I CCANNNNNTGG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 469
XagI CCTNNNNNAGG 1 cut(s) 1128
XapI RAATTY 2 cut(s) 371, 931
XceI RCATGY 4 cut(s) 74, 580, 711, 1300
XhoI CTCGAG 1 cut(s) 1163
XmaJI CCTAGG 1 cut(s) 112
XspI CTAG 3 cut(s) 113, 927, 1575
ZraI GACGTC 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.