Rw4G009580

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
21606153 .. 21606677
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009580.1

Sequence Viewer

Length: 525 bp
ATGGCCCTCTCAGAGTTTACTTTCAAGTATGTTTCACAAAAATCGGTAAAAGGACAGGCTTTAGCAGATTTCCTAGCTCACCACCCTTCTAAAGAAATAGAATCCATGGAAGAAGTGGAGATTGGGACTATTGATGCAGTATCCATGCAAAATAACTTTTGGACCATGCATTTTGATGGGTCAAGCACGGAAACTTCGGCTAGGGCTGGAGTTGTGCTCGAGTCCCCTGAAGGACAAGTGTTTTGCTTTTCATGTCAACTTGATTTTCCTTGCACGAATAACCAAGCTGAGTATAAAGCCTTGATTATTGGCATGGAAATGCTACAGGAAATGGGGGCTCAGAGGGTATTGATACTTGGGGATTCACAACTCGTTATCAATCAATTGGTGAAAGAGTTCAAATGCACAAGTTGGTCATTACTACCTTATTATGCTTTGGCAGACCAGTTGGCTGAAGCTTTTGATAGGGTAAGTTTTGCCCATGTACGGTGCAAAGATAAGTCTGATGCCAATGAATTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.44

Weight (kDa)

4.69

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 55 - 165 1.5e-06 RNase H
RVT_3 PF13456 58 - 174 1.2e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 249, 474
AfaI GTAC 1 cut(s) 486
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 2 cut(s) 25, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 3 cut(s) 77, 287, 458
AluI AGCT 3 cut(s) 77, 287, 458
Alw21I GWGCWC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 1 cut(s) 3
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
Asp700I GAANNNNTTC 1 cut(s) 395
AspS9I GGNCC 2 cut(s) 4, 162
AsuHPI GGTGA 2 cut(s) 71, 400
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 219
BccI CCATC 1 cut(s) 170
BciVI GTATCC 1 cut(s) 151
BfaI CTAG 2 cut(s) 74, 201
BfmI CTRYAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 4, 162
BmsI GCATC 2 cut(s) 124, 496
BplI GAGNNNNNCTC 2 cut(s) 201, 233
BpmI CTGGAG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 486
BseMII CTCAG 3 cut(s) 24, 279, 353
BseNI ACTGG 1 cut(s) 445
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 218
BslFI GGGAC 2 cut(s) 139, 208
BslI CCNNNNNNNGG 1 cut(s) 486
BsmFI GGGAC 2 cut(s) 139, 208
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 2 cut(s) 219, 340
Bsp19I CCATGG 1 cut(s) 105
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 23, 280, 352
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 489
BstDEI CTNAG 3 cut(s) 10, 288, 339
BstDSI CCRYGG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 323
BstXI CCANNNNNNTGG 1 cut(s) 517
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 4, 162
Csp6I GTAC 1 cut(s) 485
CviAII CATG 6 cut(s) 106, 145, 166, 252, 313, 482
CviQI GTAC 1 cut(s) 485
DdeI CTNAG 3 cut(s) 10, 288, 339
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 162
Eco57I CTGAAG 2 cut(s) 249, 474
Eco88I CYCGRG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 6 cut(s) 109, 148, 169, 255, 316, 485
FaqI GGGAC 2 cut(s) 139, 208
FatI CATG 6 cut(s) 105, 144, 165, 251, 312, 481
FriOI GRGCYC 1 cut(s) 340
FspBI CTAG 2 cut(s) 74, 201
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 6 cut(s) 109, 148, 169, 255, 316, 485
HincII GTYRAC 1 cut(s) 257
HindII GTYRAC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 3 cut(s) 101, 221, 362
HphI GGTGA 2 cut(s) 71, 400
Hpy166II GTNNAC 2 cut(s) 18, 257
Hpy188I TCNGA 3 cut(s) 13, 342, 505
Hpy8I GTNNAC 2 cut(s) 18, 257
HpyAV CCTTC 2 cut(s) 96, 224
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 6 cut(s) 137, 148, 169, 273, 405, 492
HpyF3I CTNAG 3 cut(s) 10, 288, 339
Hsp92II CATG 6 cut(s) 109, 148, 169, 255, 316, 485
LpnPI CCDG 5 cut(s) 41, 192, 240, 311, 458
LweI GCATC 2 cut(s) 124, 496
MaeI CTAG 2 cut(s) 74, 201
MboII GAAGA 1 cut(s) 122
MfeI CAATTG 1 cut(s) 383
MhlI GDGCHC 2 cut(s) 219, 340
MluCI AATT 2 cut(s) 383, 515
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 2 cut(s) 17, 336
Mph1103I ATGCAT 1 cut(s) 171
MroXI GAANNNNTTC 1 cut(s) 395
MslI CAYNNNNRTG 2 cut(s) 174, 317
MunI CAATTG 1 cut(s) 383
NcoI CCATGG 1 cut(s) 105
NlaIII CATG 6 cut(s) 109, 148, 169, 255, 316, 485
NsiI ATGCAT 1 cut(s) 171
PaeR7I CTCGAG 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 101, 362
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 4, 162
PspXI VCTCGAGB 1 cut(s) 218
RsaI GTAC 1 cut(s) 486
RsaNI GTAC 1 cut(s) 485
RseI CAYNNNNRTG 2 cut(s) 174, 317
Sau96I GGNCC 2 cut(s) 4, 162
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 2 cut(s) 219, 340
SetI ASST 4 cut(s) 79, 289, 427, 460
SfaNI GCATC 2 cut(s) 124, 496
SfcI CTRYAG 1 cut(s) 323
Sfr274I CTCGAG 1 cut(s) 218
SinI GGWCC 1 cut(s) 162
SlaI CTCGAG 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 174, 317
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 2 cut(s) 383, 515
SspMI CTAG 2 cut(s) 74, 201
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 383, 515
TfiI GAWTC 2 cut(s) 101, 362
TspDTI ATGAA 1 cut(s) 240
TspGWI ACGGA 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 162
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 2 cut(s) 74, 201
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.