Rroxscaffold_174G00435270

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000174
OG0000160
Physical Location & Seq
Reverse (-)
322284 .. 324592
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_174G00435270.1

Sequence Viewer

Length: 795 bp
ATGTGGATCTCATCAAAGCTGGCCCTAAGATGCGTTGGCTCCTCCCGACGTCATGGTTATTATTGGCCCGAGCATTTTGAAGGATTGTATTGCATTCGCCGCCAACGGCTGCGAGGATTGTCAAGCTCACGGTCCGTCCAACATGTTCCTAACATTCCTATGCAGCCTATTATTAAACCTTGGCCTGCGCGAGGTTGGGCACTAGACTTGATTGGGATGATCCATCCTCACTCACTCTCCCTACGAGCACAAGTTTATCATCGTCGCCACCGACTATTTCACAAAATGGGTCGAGGCCGAGCCTTTGAAGGAAGCCTCGTGCGCTACCATCCGCCGATTTATTTTCCTTTCAAAGAAGGTGACCTCGTTTGGAAAGCCATCTTACCCTTTGGCGAAAAGTTAAACGGTCGCGGTAAATGGACGCCGCGATGGGAAGGACCCTTCGTTATCCACCGAATATTGGAGCGCGGTGCCTTTCACCTCAAAGATGTCGACGGTGATATTCATCGCAACCCTATTAACGGTCGTTTTCGAAGAAATATTATCCAAGTGTCCGGGAGTTTGAAGATCCTCCCGATCCCGCTTCGACCGGGGGCAATCTTAATCTTCATCGGCTCGCATCCTTATTTGGCCTTCTCTCGTGGGATCTTACGCCGTGCGATAGCGATTGAGGCGTTTTCAACGCCATCAATAAGAGAATCAATGCGGTTAAATGCGATTATCTCGGAAATGGAAGATATTGAAAACGCGTGGGAAGCGGGGACGGTCTCCCAAGGAAGCAACCGCCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

264

Amino Acids

30.47

Weight (kDa)

11.08

Isoelectric Point (pI)

50.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 470
AccI GTMKAC 1 cut(s) 492
AccII CGCG 5 cut(s) 190, 411, 427, 468, 749
AciI CCGC 9 cut(s) 100, 332, 411, 425, 468, 581, 706, 758, 784
AclWI GGATC 5 cut(s) 14, 214, 562, 571, 653
AcyI GRCGYC 2 cut(s) 49, 422
AfiI CCNNNNNNNGG 3 cut(s) 191, 460, 521
AflIII ACRYGT 2 cut(s) 142, 747
AgsI TTSAA 6 cut(s) 80, 308, 352, 565, 681, 743
AluBI AGCT 2 cut(s) 19, 126
AluI AGCT 2 cut(s) 19, 126
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 772
AlwI GGATC 5 cut(s) 14, 214, 562, 571, 653
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 5 cut(s) 21, 65, 182, 295, 630
ApeKI GCWGC 2 cut(s) 109, 163
AspLEI GCGC 3 cut(s) 190, 324, 468
AspS9I GGNCC 4 cut(s) 22, 66, 132, 437
AsuC2I CCSGG 2 cut(s) 556, 591
AsuHPI GGTGA 3 cut(s) 371, 470, 509
AsuII TTCGAA 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 2 cut(s) 132, 437
BaeGI GKGCMC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 470
BauI CACGAG 2 cut(s) 317, 639
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 96, 175
BccI CCATC 5 cut(s) 231, 336, 386, 423, 694
BceAI ACGGC 2 cut(s) 122, 639
BcnI CCSGG 2 cut(s) 556, 591
BcoDI GTCTC 1 cut(s) 772
BfaI CTAG 1 cut(s) 203
BisI GCNGC 4 cut(s) 100, 110, 164, 425
BlsI GCNGC 4 cut(s) 101, 111, 165, 426
Bme1390I CCNGG 2 cut(s) 556, 591
Bme18I GGWCC 2 cut(s) 132, 437
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 4 cut(s) 22, 66, 132, 437
BmiI GGNNCC 3 cut(s) 40, 439, 472
BmrFI CCNGG 2 cut(s) 556, 591
BmsI GCATC 2 cut(s) 20, 628
Bpu14I TTCGAA 1 cut(s) 532
BpuMI CCSGG 2 cut(s) 556, 591
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 2 cut(s) 49, 422
BsaI GGTCTC 1 cut(s) 772
BsaJI CCNNGG 3 cut(s) 179, 590, 772
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 460, 521
Bse8I GATNNNNATC 1 cut(s) 504
BseDI CCNNGG 3 cut(s) 179, 590, 772
BseGI GGATG 4 cut(s) 222, 223, 328, 619
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 3 cut(s) 191, 460, 521
BseRI GAGGAG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 2 cut(s) 96, 175
Bsh1236I CGCG 5 cut(s) 190, 411, 427, 468, 749
Bsh1285I CGRYCG 3 cut(s) 409, 526, 590
BshFI GGCC 5 cut(s) 23, 67, 184, 297, 632
BshNI GGYRCC 1 cut(s) 470
BsiEI CGRYCG 3 cut(s) 409, 526, 590
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 2 cut(s) 555, 590
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 3 cut(s) 191, 460, 521
BsmAI GTCTC 1 cut(s) 772
BsmFI GGGAC 1 cut(s) 775
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 5 cut(s) 23, 67, 184, 297, 632
Bso31I GGTCTC 1 cut(s) 772
BsoBI CYCGRG 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 532
Bsp1286I GDGCHC 2 cut(s) 202, 250
Bsp143I GATC 5 cut(s) 6, 219, 567, 576, 645
BspACI CCGC 9 cut(s) 100, 332, 411, 425, 468, 581, 706, 758, 784
BspANI GGCC 5 cut(s) 23, 67, 184, 297, 632
BspFNI CGCG 5 cut(s) 190, 411, 427, 468, 749
BspLI GGNNCC 3 cut(s) 40, 439, 472
BspPI GGATC 5 cut(s) 14, 214, 562, 571, 653
BspT104I TTCGAA 1 cut(s) 532
BspT107I GGYRCC 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 772
BssECI CCNNGG 3 cut(s) 179, 590, 772
BssMI GATC 5 cut(s) 6, 219, 567, 576, 645
BssNI GRCGYC 2 cut(s) 49, 422
BssSI CACGAG 2 cut(s) 317, 639
BssT1I CCWWGG 2 cut(s) 179, 772
Bst2BI CACGAG 2 cut(s) 317, 639
Bst4CI ACNGT 5 cut(s) 132, 407, 497, 524, 766
BstACI GRCGYC 2 cut(s) 49, 422
BstBI TTCGAA 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 21, 186, 617
BstDEI CTNAG 1 cut(s) 26
BstEII GGTNACC 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 189
BstF5I GGATG 4 cut(s) 222, 223, 328, 619
BstFNI CGCG 5 cut(s) 190, 411, 427, 468, 749
BstHHI GCGC 3 cut(s) 190, 324, 468
BstKTI GATC 5 cut(s) 9, 222, 570, 579, 648
BstMAI GTCTC 1 cut(s) 772
BstMBI GATC 5 cut(s) 6, 219, 567, 576, 645
BstMCI CGRYCG 3 cut(s) 409, 526, 590
BstMWI GCNNNNNNNGC 4 cut(s) 99, 321, 671, 755
BstNSI RCATGY 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 554, 589
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 5 cut(s) 190, 411, 427, 468, 749
BstV1I GCAGC 2 cut(s) 96, 175
BstX2I RGATCY 3 cut(s) 6, 567, 645
BstYI RGATCY 3 cut(s) 6, 567, 645
BsuRI GGCC 5 cut(s) 23, 67, 184, 297, 632
BtgZI GCGATG 2 cut(s) 442, 491
BtsCI GGATG 4 cut(s) 222, 223, 328, 619
Cac8I GCNNGC 3 cut(s) 21, 186, 617
CfoI GCGC 3 cut(s) 190, 324, 468
Cfr13I GGNCC 4 cut(s) 22, 66, 132, 437
CpoI CGGWCCG 1 cut(s) 132
CseI GACGC 1 cut(s) 430
CspI CGGWCCG 1 cut(s) 132
CviAII CATG 2 cut(s) 53, 143
DdeI CTNAG 1 cut(s) 26
DpnI GATC 5 cut(s) 8, 221, 569, 578, 647
DpnII GATC 5 cut(s) 6, 219, 567, 576, 645
EciI GGCGGA 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 179, 772
Eco31I GGTCTC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 132, 437
Eco88I CYCGRG 1 cut(s) 68
Eco91I GGTNACC 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 437
EcoO65I GGTNACC 1 cut(s) 359
EcoT14I CCWWGG 2 cut(s) 179, 772
ErhI CCWWGG 2 cut(s) 179, 772
FaeI CATG 2 cut(s) 56, 146
FaiI YATR 3 cut(s) 54, 144, 161
FaqI GGGAC 1 cut(s) 775
FatI CATG 2 cut(s) 52, 142
FauI CCCGC 2 cut(s) 588, 751
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 4 cut(s) 100, 110, 164, 425
FokI GGATG 4 cut(s) 210, 229, 315, 606
Fsp4HI GCNGC 4 cut(s) 100, 110, 164, 425
FspBI CTAG 1 cut(s) 203
GlaI GCGC 3 cut(s) 189, 323, 467
GluI GCNGC 4 cut(s) 100, 110, 164, 425
HaeIII GGCC 5 cut(s) 23, 67, 184, 297, 632
HapII CCGG 2 cut(s) 555, 590
HgaI GACGC 1 cut(s) 430
HhaI GCGC 3 cut(s) 190, 324, 468
Hin1I GRCGYC 2 cut(s) 49, 422
Hin1II CATG 2 cut(s) 56, 146
Hin6I GCGC 3 cut(s) 188, 322, 466
HinP1I GCGC 3 cut(s) 188, 322, 466
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 1 cut(s) 698
HpaII CCGG 2 cut(s) 555, 590
HphI GGTGA 3 cut(s) 371, 470, 509
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 1 cut(s) 727
Hpy188III TCNNGA 2 cut(s) 45, 574
Hpy8I GTNNAC 1 cut(s) 493
Hpy99I CGWCG 3 cut(s) 51, 267, 497
HpyAV CCTTC 6 cut(s) 74, 302, 350, 428, 451, 643
HpyCH4III ACNGT 5 cut(s) 132, 407, 497, 524, 766
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 2 cut(s) 93, 163
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 321, 671, 755
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 49
Hsp92I GRCGYC 2 cut(s) 49, 422
Hsp92II CATG 2 cut(s) 56, 146
HspAI GCGC 3 cut(s) 188, 322, 466
Kzo9I GATC 5 cut(s) 6, 219, 567, 576, 645
LmnI GCTCC 2 cut(s) 44, 463
LpnPI CCDG 4 cut(s) 5, 198, 568, 603
Lsp1109I GCAGC 2 cut(s) 96, 175
LweI GCATC 2 cut(s) 20, 628
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 359
MalI GATC 5 cut(s) 8, 221, 569, 578, 647
MboI GATC 5 cut(s) 6, 219, 567, 576, 645
MboII GAAGA 4 cut(s) 546, 577, 598, 746
MflI RGATCY 3 cut(s) 6, 567, 645
MhlI GDGCHC 2 cut(s) 202, 250
MluI ACGCGT 1 cut(s) 747
MmeI TCCRAC 1 cut(s) 163
MseI TTAA 5 cut(s) 174, 401, 519, 602, 710
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 2 cut(s) 555, 590
MspR9I CCNGG 2 cut(s) 556, 591
Mva1269I GAATGC 1 cut(s) 93
MvnI CGCG 5 cut(s) 190, 411, 427, 468, 749
MwoI GCNNNNNNNGC 4 cut(s) 99, 321, 671, 755
NciI CCSGG 2 cut(s) 556, 591
NdeII GATC 5 cut(s) 6, 219, 567, 576, 645
NlaIII CATG 2 cut(s) 56, 146
NlaIV GGNNCC 3 cut(s) 40, 439, 472
NmeAIII GCCGAG 1 cut(s) 323
NmuCI GTSAC 1 cut(s) 359
NspI RCATGY 1 cut(s) 146
NspV TTCGAA 1 cut(s) 532
PciI ACATGT 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 268
PctI GAATGC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 554
PkrI GCNGC 4 cut(s) 101, 111, 165, 426
PpuMI RGGWCCY 1 cut(s) 437
PscI ACATGT 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 437
PspEI GGTNACC 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 40, 439, 472
PspPI GGNCC 4 cut(s) 22, 66, 132, 437
PspPPI RGGWCCY 1 cut(s) 437
PsuI RGATCY 3 cut(s) 6, 567, 645
RseI CAYNNNNRTG 1 cut(s) 158
Rsr2I CGGWCCG 1 cut(s) 132
RsrII CGGWCCG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 491
SaqAI TTAA 5 cut(s) 174, 401, 519, 602, 710
SatI GCNGC 4 cut(s) 100, 110, 164, 425
Sau3AI GATC 5 cut(s) 6, 219, 567, 576, 645
Sau96I GGNCC 4 cut(s) 22, 66, 132, 437
ScrFI CCNGG 2 cut(s) 556, 591
SduI GDGCHC 2 cut(s) 202, 250
SetI ASST 8 cut(s) 21, 52, 128, 181, 196, 361, 366, 483
SfaNI GCATC 2 cut(s) 20, 628
SfuI TTCGAA 1 cut(s) 532
SinI GGWCC 2 cut(s) 132, 437
SmiMI CAYNNNNRTG 1 cut(s) 158
SsiI CCGC 9 cut(s) 100, 332, 411, 425, 468, 581, 706, 758, 784
SspI AATATT 2 cut(s) 459, 541
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 554, 589
StyI CCWWGG 2 cut(s) 179, 772
TaaI ACNGT 5 cut(s) 132, 407, 497, 524, 766
TaiI ACGT 1 cut(s) 52
TaqI TCGA 4 cut(s) 292, 492, 532, 586
TauI GCSGC 2 cut(s) 102, 427
TfiI GAWTC 1 cut(s) 698
Tru1I TTAA 5 cut(s) 174, 401, 519, 602, 710
Tru9I TTAA 5 cut(s) 174, 401, 519, 602, 710
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 109, 163
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 494, 598
TspGWI ACGGA 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 132, 437
XagI CCTNNNNNAGG 1 cut(s) 189
XceI RCATGY 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 492
XspI CTAG 1 cut(s) 203
ZraI GACGTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.