Rroxscaffold_4G00322230

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000160
Physical Location & Seq
Forward (+)
52384402 .. 52388965
4564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00322230.1

Sequence Viewer

Length: 570 bp
ATGAGTCCAAGAGCAGCATCATTTGATCGGCGAGGATTATGTTCAAGCAATGTGGCGGAGCACGAAGACTTAAGCGAGCAGCGATTGACTGCGTTGGATAATTTGGTGATGGAAAAACAACGCATCGCCCGCGCCTATGATAAGCGGACGCGGGGCCGCAGTTTCAAAGAAGGTGACCTCGTTTGGAAGGTCATCTTACCCTTTGGCGAAAAGTTAAGCGGTCGCGGTAAATGGACGCCGCGATGGGAAGGACCCTTCGTTATCCACCGAATATTGGAGCGCGGTGCCTTTCACCTCAAAGATGTCGACGGTGATATTCATCGCAACCCTATTAACGGTCATTTTCTGAAGAAATATTATCCAAGTGTCCGGGAGTTCGAAGATCCTCCCGATCCCGCTGCGACCGGGGGCAATCTTAATCTTCATCGGCTCGCATCCTTATTTGGCCTTCTCTCGTGGCCTTTTTACCCATCCTCCGGCGAGGAGTTGGACTGCGGAGCAAGCGCGACTCACAACCACATCTACCTCCGGGGTAAATCGGAAAGTGCGTACCCGTGCCCCGAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

189

Amino Acids

21.5

Weight (kDa)

8.78

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 284
AccI GTMKAC 1 cut(s) 306
AccII CGCG 6 cut(s) 132, 151, 225, 241, 282, 506
AclWI GGATC 2 cut(s) 377, 386
AcuI CTGAAG 1 cut(s) 368
AcyI GRCGYC 1 cut(s) 236
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 3 cut(s) 274, 335, 476
AflII CTTAAG 1 cut(s) 70
AgsI TTSAA 2 cut(s) 45, 166
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 2 cut(s) 377, 386
Ama87I CYCGRG 1 cut(s) 560
AoxI GGCC 3 cut(s) 154, 445, 458
ApeKI GCWGC 3 cut(s) 14, 79, 398
AspLEI GCGC 3 cut(s) 134, 282, 506
AspS9I GGNCC 2 cut(s) 154, 251
AsuC2I CCSGG 3 cut(s) 371, 406, 530
AsuHPI GGTGA 4 cut(s) 118, 185, 284, 323
AsuII TTCGAA 1 cut(s) 378
AvaI CYCGRG 1 cut(s) 560
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 284
BauI CACGAG 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 26, 91, 385
BccI CCATC 3 cut(s) 103, 237, 478
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BcnI CCSGG 3 cut(s) 371, 406, 530
BfrI CTTAAG 1 cut(s) 70
BisI GCNGC 5 cut(s) 15, 80, 157, 239, 399
BlsI GCNGC 5 cut(s) 16, 81, 158, 240, 400
Bme1390I CCNGG 3 cut(s) 371, 406, 530
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 154, 251
BmiI GGNNCC 3 cut(s) 155, 253, 286
BmrFI CCNGG 3 cut(s) 371, 406, 530
BmsI GCATC 3 cut(s) 26, 132, 443
BpiI GAAGAC 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 378
BpuMI CCSGG 3 cut(s) 371, 406, 530
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 405, 529
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 335, 476
Bse3DI GCAATG 1 cut(s) 55
Bse8I GATNNNNATC 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 405, 529
BseGI GGATG 2 cut(s) 434, 470
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 3 cut(s) 274, 335, 476
BseMI GCAATG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 3 cut(s) 26, 91, 385
Bsh1236I CGCG 6 cut(s) 132, 151, 225, 241, 282, 506
Bsh1285I CGRYCG 2 cut(s) 223, 405
BshFI GGCC 3 cut(s) 156, 447, 460
BshNI GGYRCC 1 cut(s) 284
BsiEI CGRYCG 2 cut(s) 223, 405
BsiHKAI GWGCWC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 560
BsiSI CCGG 4 cut(s) 370, 405, 477, 529
BslI CCNNNNNNNGG 3 cut(s) 274, 335, 476
BsnI GGCC 3 cut(s) 156, 447, 460
BsoBI CYCGRG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 63, 560
Bsp143I GATC 3 cut(s) 25, 382, 391
BspANI GGCC 3 cut(s) 156, 447, 460
BspFNI CGCG 6 cut(s) 132, 151, 225, 241, 282, 506
BspLI GGNNCC 3 cut(s) 155, 253, 286
BspPI GGATC 2 cut(s) 377, 386
BspT104I TTCGAA 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 284
BspTI CTTAAG 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 405, 529
BssMI GATC 3 cut(s) 25, 382, 391
BssNI GRCGYC 1 cut(s) 236
BssSI CACGAG 1 cut(s) 454
Bst2BI CACGAG 1 cut(s) 454
Bst4CI ACNGT 2 cut(s) 311, 338
BstACI GRCGYC 1 cut(s) 236
BstAFI CTTAAG 1 cut(s) 70
BstBI TTCGAA 1 cut(s) 378
BstC8I GCNNGC 4 cut(s) 77, 130, 432, 502
BstEII GGTNACC 1 cut(s) 173
BstF5I GGATG 2 cut(s) 434, 470
BstFNI CGCG 6 cut(s) 132, 151, 225, 241, 282, 506
BstHHI GCGC 3 cut(s) 134, 282, 506
BstKTI GATC 3 cut(s) 28, 385, 394
BstMBI GATC 3 cut(s) 25, 382, 391
BstMCI CGRYCG 2 cut(s) 223, 405
BstMWI GCNNNNNNNGC 2 cut(s) 129, 501
BstPI GGTNACC 1 cut(s) 173
BstSCI CCNGG 3 cut(s) 369, 404, 528
BstSLI GKGCMC 1 cut(s) 560
BstUI CGCG 6 cut(s) 132, 151, 225, 241, 282, 506
BstV1I GCAGC 3 cut(s) 26, 91, 385
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 3 cut(s) 156, 447, 460
BtgZI GCGATG 3 cut(s) 109, 256, 305
BtsCI GGATG 2 cut(s) 434, 470
Cac8I GCNNGC 4 cut(s) 77, 130, 432, 502
CfoI GCGC 3 cut(s) 134, 282, 506
Cfr13I GGNCC 2 cut(s) 154, 251
CseI GACGC 2 cut(s) 157, 244
Csp6I GTAC 1 cut(s) 550
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviJI RGCY 4 cut(s) 156, 430, 447, 460
CviKI_1 RGCY 4 cut(s) 156, 430, 447, 460
CviQI GTAC 1 cut(s) 550
DpnI GATC 3 cut(s) 27, 384, 393
DpnII GATC 3 cut(s) 25, 382, 391
EciI GGCGGA 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 560
Eco91I GGTNACC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 173
FaiI YATR 2 cut(s) 40, 138
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FauI CCCGC 3 cut(s) 137, 144, 403
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 5 cut(s) 15, 80, 157, 239, 399
FokI GGATG 2 cut(s) 421, 457
Fsp4HI GCNGC 5 cut(s) 15, 80, 157, 239, 399
GlaI GCGC 3 cut(s) 133, 281, 505
GluI GCNGC 5 cut(s) 15, 80, 157, 239, 399
HaeIII GGCC 3 cut(s) 156, 447, 460
HapII CCGG 4 cut(s) 370, 405, 477, 529
HgaI GACGC 2 cut(s) 157, 244
HhaI GCGC 3 cut(s) 134, 282, 506
Hin1I GRCGYC 1 cut(s) 236
Hin6I GCGC 3 cut(s) 132, 280, 504
HinP1I GCGC 3 cut(s) 132, 280, 504
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 2 cut(s) 4, 508
HpaII CCGG 4 cut(s) 370, 405, 477, 529
HphI GGTGA 4 cut(s) 118, 185, 284, 323
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 348, 541
Hpy188III TCNNGA 1 cut(s) 389
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 5 cut(s) 164, 181, 242, 265, 458
HpyCH4III ACNGT 2 cut(s) 311, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 501
Hsp92I GRCGYC 1 cut(s) 236
HspAI GCGC 3 cut(s) 132, 280, 504
Kzo9I GATC 3 cut(s) 25, 382, 391
LmnI GCTCC 3 cut(s) 58, 277, 497
LpnPI CCDG 4 cut(s) 383, 418, 490, 542
Lsp1109I GCAGC 3 cut(s) 26, 91, 385
LweI GCATC 3 cut(s) 26, 132, 443
MaeIII GTNAC 1 cut(s) 173
MalI GATC 3 cut(s) 27, 384, 393
MboI GATC 3 cut(s) 25, 382, 391
MboII GAAGA 4 cut(s) 77, 361, 392, 413
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 2 cut(s) 63, 560
MluCI AATT 1 cut(s) 100
MlyI GAGTC 2 cut(s) 13, 502
MmeI TCCRAC 2 cut(s) 75, 468
MnlI CCTC 8 cut(s) 26, 188, 305, 396, 475, 484, 536, 558
MseI TTAA 4 cut(s) 71, 215, 333, 417
MspA1I CMGCKG 1 cut(s) 398
MspCI CTTAAG 1 cut(s) 70
MspI CCGG 4 cut(s) 370, 405, 477, 529
MspR9I CCNGG 3 cut(s) 371, 406, 530
MvnI CGCG 6 cut(s) 132, 151, 225, 241, 282, 506
MwoI GCNNNNNNNGC 2 cut(s) 129, 501
NciI CCSGG 3 cut(s) 371, 406, 530
NdeII GATC 3 cut(s) 25, 382, 391
NlaIV GGNNCC 3 cut(s) 155, 253, 286
NmuCI GTSAC 1 cut(s) 173
NspV TTCGAA 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 5 cut(s) 16, 81, 158, 240, 400
PleI GAGTC 2 cut(s) 12, 502
PpsI GAGTC 2 cut(s) 12, 502
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
PspEI GGTNACC 1 cut(s) 173
PspN4I GGNNCC 3 cut(s) 155, 253, 286
PspPI GGNCC 2 cut(s) 154, 251
PspPPI RGGWCCY 1 cut(s) 251
PsuI RGATCY 1 cut(s) 382
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SalI GTCGAC 1 cut(s) 305
SaqAI TTAA 4 cut(s) 71, 215, 333, 417
SatI GCNGC 5 cut(s) 15, 80, 157, 239, 399
Sau3AI GATC 3 cut(s) 25, 382, 391
Sau96I GGNCC 2 cut(s) 154, 251
SchI GAGTC 2 cut(s) 13, 502
ScrFI CCNGG 3 cut(s) 371, 406, 530
SduI GDGCHC 2 cut(s) 63, 560
SetI ASST 6 cut(s) 175, 180, 192, 297, 528, 569
SfaNI GCATC 3 cut(s) 26, 132, 443
SfuI TTCGAA 1 cut(s) 378
SinI GGWCC 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 1 cut(s) 100
SspI AATATT 2 cut(s) 273, 356
StyD4I CCNGG 3 cut(s) 369, 404, 528
TaaI ACNGT 2 cut(s) 311, 338
TaqI TCGA 2 cut(s) 306, 378
TasI AATT 1 cut(s) 100
TauI GCSGC 2 cut(s) 159, 241
Tru1I TTAA 4 cut(s) 71, 215, 333, 417
Tru9I TTAA 4 cut(s) 71, 215, 333, 417
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 3 cut(s) 14, 79, 398
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 308, 413
Vha464I CTTAAG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.