Uncharacterized protein K02A2.6-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 912 - 1057 | 1.2e-20 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1121 - 1219 | 2.4e-24 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1149 - 1250 | 6.1e-25 | RNase H-like domain found in reverse transcriptase |
| RVT_3 | PF13456 | 1301 - 1420 | 1.4e-22 | Reverse transcriptase-like |
| Integrase_H2C2 | PF17921 | 1520 - 1575 | 1.8e-07 | Integrase zinc binding domain |
| rve | PF00665 | 1594 - 1691 | 1.2e-11 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 161 |
| AatII | GACGTC | 1 cut(s) | 779 |
| Acc16I | TGCGCA | 1 cut(s) | 180 |
| Acc36I | ACCTGC | 2 cut(s) | 3858, 4975 |
| Acc65I | GGTACC | 1 cut(s) | 3177 |
| AccB1I | GGYRCC | 5 cut(s) | 469, 2855, 3177, 3430, 5414 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1526, 2158 |
| AccBSI | CCGCTC | 2 cut(s) | 1150, 3617 |
| AccI | GTMKAC | 3 cut(s) | 2913, 3024, 5238 |
| AccII | CGCG | 2 cut(s) | 138, 2097 |
| AccIII | TCCGGA | 3 cut(s) | 359, 3096, 3710 |
| AclI | AACGTT | 2 cut(s) | 735, 4011 |
| AcoI | YGGCCR | 1 cut(s) | 4664 |
| AcsI | RAATTY | 8 cut(s) | 213, 274, 488, 1481, 1820, 2333, 3241, 5435 |
| AcuI | CTGAAG | 5 cut(s) | 1556, 2676, 2971, 4905, 5268 |
| AcvI | CACGTG | 1 cut(s) | 2054 |
| AcyI | GRCGYC | 3 cut(s) | 776, 2465, 5415 |
| AdeI | CACNNNGTG | 1 cut(s) | 3820 |
| AfeI | AGCGCT | 1 cut(s) | 2114 |
| AflII | CTTAAG | 1 cut(s) | 388 |
| AflIII | ACRYGT | 6 cut(s) | 136, 865, 954, 1951, 2053, 3762 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5372 |
| AleI | CACNNNNGTG | 1 cut(s) | 2231 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5448, 5480 |
| Alw21I | GWGCWC | 7 cut(s) | 418, 2458, 2637, 3060, 4380, 4612, 5222 |
| Alw44I | GTGCAC | 1 cut(s) | 5218 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 674, 1877 |
| Ama87I | CYCGRG | 1 cut(s) | 626 |
| Aor13HI | TCCGGA | 3 cut(s) | 359, 3096, 3710 |
| Aor51HI | AGCGCT | 1 cut(s) | 2114 |
| ApaI | GGGCCC | 2 cut(s) | 575, 5537 |
| ApaLI | GTGCAC | 1 cut(s) | 5218 |
| ApeKI | GCWGC | 8 cut(s) | 104, 1516, 3809, 3892, 4259, 4568, 4634, 4856 |
| ApoI | RAATTY | 8 cut(s) | 213, 274, 488, 1481, 1820, 2333, 3241, 5435 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 4890 |
| Asp718I | GGTACC | 1 cut(s) | 3177 |
| AspLEI | GCGC | 4 cut(s) | 181, 1851, 2115, 5417 |
| AsuC2I | CCSGG | 2 cut(s) | 872, 2690 |
| AsuII | TTCGAA | 2 cut(s) | 4004, 4785 |
| AvaI | CYCGRG | 1 cut(s) | 626 |
| AvaII | GGWCC | 5 cut(s) | 345, 2431, 4524, 4622, 5017 |
| AxyI | CCTNAGG | 4 cut(s) | 498, 576, 1572, 5172 |
| BaeGI | GKGCMC | 4 cut(s) | 575, 1250, 5222, 5537 |
| BamHI | GGATCC | 1 cut(s) | 1110 |
| BanI | GGYRCC | 5 cut(s) | 469, 2855, 3177, 3430, 5414 |
| BanII | GRGCYC | 5 cut(s) | 575, 950, 2637, 4612, 5537 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5241, 5273 |
| BbrPI | CACGTG | 1 cut(s) | 2054 |
| BbsI | GAAGAC | 4 cut(s) | 308, 2319, 3852, 5548 |
| Bbv12I | GWGCWC | 7 cut(s) | 418, 2458, 2637, 3060, 4380, 4612, 5222 |
| BbvCI | CCTCAGC | 2 cut(s) | 917, 2427 |
| BbvI | GCAGC | 8 cut(s) | 91, 1528, 3821, 3904, 4271, 4580, 4646, 4843 |
| BciVI | GTATCC | 1 cut(s) | 1211 |
| BclI | TGATCA | 3 cut(s) | 3, 1780, 4032 |
| BcnI | CCSGG | 2 cut(s) | 872, 2690 |
| BfaI | CTAG | 6 cut(s) | 219, 2075, 3599, 3915, 4446, 5264 |
| BfmI | CTRYAG | 3 cut(s) | 2485, 5073, 5188 |
| BfoI | RGCGCY | 2 cut(s) | 2116, 5418 |
| BfrI | CTTAAG | 1 cut(s) | 388 |
| BfuAI | ACCTGC | 2 cut(s) | 3858, 4975 |
| BfuI | GTATCC | 1 cut(s) | 1211 |
| BglII | AGATCT | 2 cut(s) | 2489, 2776 |
| BlpI | GCTNAGC | 3 cut(s) | 1581, 3718, 4638 |
| BmcAI | AGTACT | 2 cut(s) | 4424, 4539 |
| Bme18I | GGWCC | 5 cut(s) | 345, 2431, 4524, 4622, 5017 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5372 |
| BmeT110I | CYCGRG | 1 cut(s) | 626 |
| BmrI | ACTGGG | 2 cut(s) | 351, 2723 |
| BmuI | ACTGGG | 2 cut(s) | 351, 2723 |
| BpiI | GAAGAC | 4 cut(s) | 308, 2319, 3852, 5548 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 14, 46, 593, 625 |
| BpmI | CTGGAG | 5 cut(s) | 1244, 2313, 2483, 3402, 4731 |
| Bpu10I | CCTNAGC | 4 cut(s) | 917, 1907, 2427, 5403 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1581, 3718, 4638 |
| Bpu14I | TTCGAA | 2 cut(s) | 4004, 4785 |
| BpuEI | CTTGAG | 6 cut(s) | 566, 1136, 1919, 3094, 3395, 4064 |
| BpuMI | CCSGG | 2 cut(s) | 872, 2690 |
| BsaAI | YACGTR | 3 cut(s) | 2054, 3763, 4471 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 1440 |
| BsaHI | GRCGYC | 3 cut(s) | 776, 2465, 5415 |
| BsaI | GGTCTC | 1 cut(s) | 5140 |
| BsaWI | WCCGGW | 5 cut(s) | 359, 793, 1107, 3096, 3710 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1335, 1365, 4685, 4715, 5448, 5478, 5522, 5552 |
| Bse118I | RCCGGY | 1 cut(s) | 4619 |
| Bse21I | CCTNAGG | 4 cut(s) | 498, 576, 1572, 5172 |
| Bse3DI | GCAATG | 2 cut(s) | 896, 3491 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 1440 |
| BseAI | TCCGGA | 3 cut(s) | 359, 3096, 3710 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 1440 |
| BseMI | GCAATG | 2 cut(s) | 896, 3491 |
| BseRI | GAGGAG | 5 cut(s) | 2486, 3091, 3222, 3398, 3939 |
| BseSI | GKGCMC | 4 cut(s) | 575, 1250, 5222, 5537 |
| BseXI | GCAGC | 8 cut(s) | 91, 1528, 3821, 3904, 4271, 4580, 4646, 4843 |
| BseYI | CCCAGC | 2 cut(s) | 2349, 2598 |
| Bsh1236I | CGCG | 2 cut(s) | 138, 2097 |
| BshNI | GGYRCC | 5 cut(s) | 469, 2855, 3177, 3430, 5414 |
| BsiHKAI | GWGCWC | 7 cut(s) | 418, 2458, 2637, 3060, 4380, 4612, 5222 |
| BsiHKCI | CYCGRG | 1 cut(s) | 626 |
| BsiSI | CCGG | 9 cut(s) | 360, 794, 872, 1108, 2689, 3097, 3711, 3854, 4620 |
| BsmBI | CGTCTC | 1 cut(s) | 4468 |
| BsmI | GAATGC | 4 cut(s) | 2953, 3134, 5051, 5168 |
| Bso31I | GGTCTC | 1 cut(s) | 5140 |
| BsoBI | CYCGRG | 1 cut(s) | 626 |
| Bsp119I | TTCGAA | 2 cut(s) | 4004, 4785 |
| Bsp120I | GGGCCC | 2 cut(s) | 571, 5533 |
| Bsp13I | TCCGGA | 3 cut(s) | 359, 3096, 3710 |
| Bsp1407I | TGTACA | 2 cut(s) | 957, 4515 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1581, 3718, 4638 |
| Bsp19I | CCATGG | 3 cut(s) | 1242, 4084, 5013 |
| BspEI | TCCGGA | 3 cut(s) | 359, 3096, 3710 |
| BspFNI | CGCG | 2 cut(s) | 138, 2097 |
| BspHI | TCATGA | 2 cut(s) | 13, 1746 |
| BspMI | ACCTGC | 2 cut(s) | 3858, 4975 |
| BspT104I | TTCGAA | 2 cut(s) | 4004, 4785 |
| BspT107I | GGYRCC | 5 cut(s) | 469, 2855, 3177, 3430, 5414 |
| BspTI | CTTAAG | 1 cut(s) | 388 |
| BspTNI | GGTCTC | 1 cut(s) | 5140 |
| BsrBI | CCGCTC | 2 cut(s) | 1150, 3617 |
| BsrDI | GCAATG | 2 cut(s) | 896, 3491 |
| BsrFI | RCCGGY | 1 cut(s) | 4619 |
| BsrGI | TGTACA | 2 cut(s) | 957, 4515 |
| BssAI | RCCGGY | 1 cut(s) | 4619 |
| BssNAI | GTATAC | 2 cut(s) | 2914, 5239 |
| BssNI | GRCGYC | 3 cut(s) | 776, 2465, 5415 |
| BssT1I | CCWWGG | 8 cut(s) | 464, 1242, 1346, 2416, 3160, 3603, 4084, 5013 |
| Bst1107I | GTATAC | 2 cut(s) | 2914, 5239 |
| Bst6I | CTCTTC | 7 cut(s) | 404, 441, 960, 1023, 1773, 4557, 4761 |
| BstACI | GRCGYC | 3 cut(s) | 776, 2465, 5415 |
| BstAFI | CTTAAG | 1 cut(s) | 388 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3497, 4713, 5057 |
| BstAUI | TGTACA | 2 cut(s) | 957, 4515 |
| BstBAI | YACGTR | 3 cut(s) | 2054, 3763, 4471 |
| BstBI | TTCGAA | 2 cut(s) | 4004, 4785 |
| BstDSI | CCRYGG | 3 cut(s) | 1242, 4084, 5013 |
| BstEII | GGTNACC | 1 cut(s) | 559 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 2965, 3438, 5171 |
| BstFNI | CGCG | 2 cut(s) | 138, 2097 |
| BstH2I | RGCGCY | 2 cut(s) | 2116, 5418 |
| BstHHI | GCGC | 4 cut(s) | 181, 1851, 2115, 5417 |
| BstPI | GGTNACC | 1 cut(s) | 559 |
| BstSFI | CTRYAG | 3 cut(s) | 2485, 5073, 5188 |
| BstSLI | GKGCMC | 4 cut(s) | 575, 1250, 5222, 5537 |
| BstUI | CGCG | 2 cut(s) | 138, 2097 |
| BstV1I | GCAGC | 8 cut(s) | 91, 1528, 3821, 3904, 4271, 4580, 4646, 4843 |
| BstV2I | GAAGAC | 4 cut(s) | 308, 2319, 3852, 5548 |
| BstX2I | RGATCY | 9 cut(s) | 432, 1033, 1110, 2489, 2551, 2751, 2776, 4220, 5268 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1361, 2713, 3360, 4724 |
| BstYI | RGATCY | 9 cut(s) | 432, 1033, 1110, 2489, 2551, 2751, 2776, 4220, 5268 |
| BstZ17I | GTATAC | 2 cut(s) | 2914, 5239 |
| Bsu36I | CCTNAGG | 4 cut(s) | 498, 576, 1572, 5172 |
| BsuI | GTATCC | 1 cut(s) | 1211 |
| BtgI | CCRYGG | 3 cut(s) | 1242, 4084, 5013 |
| BtsI | GCAGTG | 1 cut(s) | 87 |
| BveI | ACCTGC | 2 cut(s) | 3858, 4975 |
| CaiI | CAGNNNCTG | 2 cut(s) | 674, 1877 |
| CciI | TCATGA | 2 cut(s) | 13, 1746 |
| CfoI | GCGC | 4 cut(s) | 181, 1851, 2115, 5417 |
| Cfr10I | RCCGGY | 1 cut(s) | 4619 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1804, 1839 |
| DinI | GGCGCC | 1 cut(s) | 5416 |
| DraI | TTTAAA | 2 cut(s) | 1450, 2943 |
| DraIII | CACNNNGTG | 1 cut(s) | 3820 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 161 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5372 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 161 |
| EaeI | YGGCCR | 1 cut(s) | 4664 |
| Eam1104I | CTCTTC | 7 cut(s) | 404, 441, 960, 1023, 1773, 4557, 4761 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5372 |
| EarI | CTCTTC | 7 cut(s) | 404, 441, 960, 1023, 1773, 4557, 4761 |
| EciI | GGCGGA | 1 cut(s) | 611 |
| Ecl136II | GAGCTC | 2 cut(s) | 2635, 4610 |
| Eco130I | CCWWGG | 8 cut(s) | 464, 1242, 1346, 2416, 3160, 3603, 4084, 5013 |
| Eco147I | AGGCCT | 1 cut(s) | 5482 |
| Eco24I | GRGCYC | 5 cut(s) | 575, 950, 2637, 4612, 5537 |
| Eco31I | GGTCTC | 1 cut(s) | 5140 |
| Eco32I | GATATC | 1 cut(s) | 3754 |
| Eco47I | GGWCC | 5 cut(s) | 345, 2431, 4524, 4622, 5017 |
| Eco47III | AGCGCT | 1 cut(s) | 2114 |
| Eco53kI | GAGCTC | 2 cut(s) | 2635, 4610 |
| Eco57I | CTGAAG | 5 cut(s) | 1556, 2676, 2971, 4905, 5268 |
| Eco72I | CACGTG | 1 cut(s) | 2054 |
| Eco81I | CCTNAGG | 4 cut(s) | 498, 576, 1572, 5172 |
| Eco88I | CYCGRG | 1 cut(s) | 626 |
| Eco91I | GGTNACC | 1 cut(s) | 559 |
| EcoICRI | GAGCTC | 2 cut(s) | 2635, 4610 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 2965, 3438, 5171 |
| EcoO109I | RGGNCCY | 6 cut(s) | 345, 571, 572, 2431, 4524, 5533 |
| EcoO65I | GGTNACC | 1 cut(s) | 559 |
| EcoRI | GAATTC | 2 cut(s) | 488, 2333 |
| EcoRV | GATATC | 1 cut(s) | 3754 |
| EcoT14I | CCWWGG | 8 cut(s) | 464, 1242, 1346, 2416, 3160, 3603, 4084, 5013 |
| EcoT22I | ATGCAT | 1 cut(s) | 5053 |
| EcoT38I | GRGCYC | 5 cut(s) | 575, 950, 2637, 4612, 5537 |
| EgeI | GGCGCC | 1 cut(s) | 5416 |
| EheI | GGCGCC | 1 cut(s) | 5416 |
| ErhI | CCWWGG | 8 cut(s) | 464, 1242, 1346, 2416, 3160, 3603, 4084, 5013 |
| Esp3I | CGTCTC | 1 cut(s) | 4468 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 60, 92 |
| FauI | CCCGC | 2 cut(s) | 2102, 4336 |
| FauNDI | CATATG | 2 cut(s) | 1360, 5572 |
| FbaI | TGATCA | 3 cut(s) | 3, 1780, 4032 |
| FblI | GTMKAC | 3 cut(s) | 2913, 3024, 5238 |
| FriOI | GRGCYC | 5 cut(s) | 575, 950, 2637, 4612, 5537 |
| FspAI | RTGCGCAY | 1 cut(s) | 180 |
| FspBI | CTAG | 6 cut(s) | 219, 2075, 3599, 3915, 4446, 5264 |
| FspI | TGCGCA | 1 cut(s) | 180 |
| GlaI | GCGC | 4 cut(s) | 180, 1850, 2114, 5416 |
| GsaI | CCCAGC | 2 cut(s) | 2353, 2602 |
| GsuI | CTGGAG | 5 cut(s) | 1244, 2313, 2483, 3402, 4731 |
| HaeII | RGCGCY | 2 cut(s) | 2116, 5418 |
| HapII | CCGG | 9 cut(s) | 360, 794, 872, 1108, 2689, 3097, 3711, 3854, 4620 |
| HhaI | GCGC | 4 cut(s) | 181, 1851, 2115, 5417 |
| Hin1I | GRCGYC | 3 cut(s) | 776, 2465, 5415 |
| Hin6I | GCGC | 4 cut(s) | 179, 1849, 2113, 5415 |
| HinP1I | GCGC | 4 cut(s) | 179, 1849, 2113, 5415 |
| HincII | GTYRAC | 6 cut(s) | 288, 1206, 2463, 2662, 3025, 3070 |
| HindII | GTYRAC | 6 cut(s) | 288, 1206, 2463, 2662, 3025, 3070 |
| HindIII | AAGCTT | 3 cut(s) | 936, 4026, 4927 |
| HpaII | CCGG | 9 cut(s) | 360, 794, 872, 1108, 2689, 3097, 3711, 3854, 4620 |
| Hpy99I | CGWCG | 8 cut(s) | 143, 778, 1102, 2622, 2789, 3026, 3029, 4317 |
| Hsp92I | GRCGYC | 3 cut(s) | 776, 2465, 5415 |
| HspAI | GCGC | 4 cut(s) | 179, 1849, 2113, 5415 |
| KasI | GGCGCC | 1 cut(s) | 5414 |
| Kpn2I | TCCGGA | 3 cut(s) | 359, 3096, 3710 |
| KpnI | GGTACC | 1 cut(s) | 3181 |
| Ksp22I | TGATCA | 3 cut(s) | 3, 1780, 4032 |
| Lsp1109I | GCAGC | 8 cut(s) | 91, 1528, 3821, 3904, 4271, 4580, 4646, 4843 |
| MaeI | CTAG | 6 cut(s) | 219, 2075, 3599, 3915, 4446, 5264 |
| MbiI | CCGCTC | 2 cut(s) | 1150, 3617 |
| MfeI | CAATTG | 3 cut(s) | 1187, 1734, 4097 |
| MflI | RGATCY | 9 cut(s) | 432, 1033, 1110, 2489, 2551, 2751, 2776, 4220, 5268 |
| MluI | ACGCGT | 1 cut(s) | 136 |
| Mly113I | GGCGCC | 1 cut(s) | 5415 |
| MlyI | GAGTC | 4 cut(s) | 23, 830, 1611, 5562 |
| MmeI | TCCRAC | 5 cut(s) | 1340, 1520, 2208, 4285, 5401 |
| Mph1103I | ATGCAT | 1 cut(s) | 5053 |
| MroI | TCCGGA | 3 cut(s) | 359, 3096, 3710 |
| MroXI | GAANNNNTTC | 1 cut(s) | 4890 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1359, 1956, 2231, 2927, 3358, 3886 |
| MspA1I | CMGCKG | 4 cut(s) | 1133, 2426, 4642, 5023 |
| MspCI | CTTAAG | 1 cut(s) | 388 |
| MspI | CCGG | 9 cut(s) | 360, 794, 872, 1108, 2689, 3097, 3711, 3854, 4620 |
| MunI | CAATTG | 3 cut(s) | 1187, 1734, 4097 |
| Mva1269I | GAATGC | 4 cut(s) | 2953, 3134, 5051, 5168 |
| MvnI | CGCG | 2 cut(s) | 138, 2097 |
| NarI | GGCGCC | 1 cut(s) | 5415 |
| NciI | CCSGG | 2 cut(s) | 872, 2690 |
| NcoI | CCATGG | 3 cut(s) | 1242, 4084, 5013 |
| NdeI | CATATG | 2 cut(s) | 1360, 5572 |
| NmeAIII | GCCGAG | 1 cut(s) | 5116 |
| NmuCI | GTSAC | 3 cut(s) | 559, 2190, 5545 |
| NsbI | TGCGCA | 1 cut(s) | 180 |
| NsiI | ATGCAT | 1 cut(s) | 5053 |
| NspV | TTCGAA | 2 cut(s) | 4004, 4785 |
| OliI | CACNNNNGTG | 1 cut(s) | 2231 |
| PaeI | GCATGC | 4 cut(s) | 1966, 2793, 4716, 5051 |
| PagI | TCATGA | 2 cut(s) | 13, 1746 |
| PasI | CCCWGGG | 1 cut(s) | 200 |
| PceI | AGGCCT | 1 cut(s) | 5482 |
| PciI | ACATGT | 2 cut(s) | 954, 1951 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5352 |
| PctI | GAATGC | 4 cut(s) | 2953, 3134, 5051, 5168 |
| PdmI | GAANNNNTTC | 1 cut(s) | 4890 |
| PfeI | GAWTC | 8 cut(s) | 205, 266, 1138, 2282, 4091, 4349, 4682, 5107 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1526, 2158 |
| PfoI | TCCNGGA | 3 cut(s) | 667, 2499, 2688 |
| PleI | GAGTC | 4 cut(s) | 23, 829, 1610, 5561 |
| PluTI | GGCGCC | 1 cut(s) | 5418 |
| PmaCI | CACGTG | 1 cut(s) | 2054 |
| PmlI | CACGTG | 1 cut(s) | 2054 |
| PpsI | GAGTC | 4 cut(s) | 23, 829, 1610, 5561 |
| Ppu21I | YACGTR | 3 cut(s) | 2054, 3763, 4471 |
| PpuMI | RGGWCCY | 3 cut(s) | 345, 2431, 4524 |
| PscI | ACATGT | 2 cut(s) | 954, 1951 |
| Psp124BI | GAGCTC | 2 cut(s) | 2637, 4612 |
| Psp1406I | AACGTT | 2 cut(s) | 735, 4011 |
| Psp5II | RGGWCCY | 3 cut(s) | 345, 2431, 4524 |
| PspCI | CACGTG | 1 cut(s) | 2054 |
| PspEI | GGTNACC | 1 cut(s) | 559 |
| PspFI | CCCAGC | 2 cut(s) | 2349, 2598 |
| PspOMI | GGGCCC | 2 cut(s) | 571, 5533 |
| PspPPI | RGGWCCY | 3 cut(s) | 345, 2431, 4524 |
| PstNI | CAGNNNCTG | 2 cut(s) | 674, 1877 |
| PsuI | RGATCY | 9 cut(s) | 432, 1033, 1110, 2489, 2551, 2751, 2776, 4220, 5268 |
| PvuII | CAGCTG | 4 cut(s) | 1133, 2426, 4642, 5023 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1359, 1956, 2231, 2927, 3358, 3886 |
| SacI | GAGCTC | 2 cut(s) | 2637, 4612 |
| SalI | GTCGAC | 1 cut(s) | 3023 |
| ScaI | AGTACT | 2 cut(s) | 4424, 4539 |
| SchI | GAGTC | 4 cut(s) | 23, 830, 1611, 5562 |
| SfcI | CTRYAG | 3 cut(s) | 2485, 5073, 5188 |
| SfoI | GGCGCC | 1 cut(s) | 5416 |
| SfuI | TTCGAA | 2 cut(s) | 4004, 4785 |
| SgrDI | CGTCGACG | 1 cut(s) | 3023 |
| SinI | GGWCC | 5 cut(s) | 345, 2431, 4524, 4622, 5017 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1359, 1956, 2231, 2927, 3358, 3886 |
| SmlI | CTYRAG | 7 cut(s) | 388, 545, 1151, 1934, 3073, 3410, 4043 |
| SmoI | CTYRAG | 7 cut(s) | 388, 545, 1151, 1934, 3073, 3410, 4043 |
| SphI | GCATGC | 4 cut(s) | 1966, 2793, 4716, 5051 |
| SseBI | AGGCCT | 1 cut(s) | 5482 |
| SspDI | GGCGCC | 1 cut(s) | 5414 |
| SspI | AATATT | 1 cut(s) | 1676 |
| SspMI | CTAG | 6 cut(s) | 219, 2075, 3599, 3915, 4446, 5264 |
| SstI | GAGCTC | 2 cut(s) | 2637, 4612 |
| StuI | AGGCCT | 1 cut(s) | 5482 |
| StyI | CCWWGG | 8 cut(s) | 464, 1242, 1346, 2416, 3160, 3603, 4084, 5013 |
| TatI | WGTACW | 6 cut(s) | 957, 3534, 4198, 4422, 4515, 4537 |
| TauI | GCSGC | 3 cut(s) | 3470, 3617, 3914 |
| TfiI | GAWTC | 8 cut(s) | 205, 266, 1138, 2282, 4091, 4349, 4682, 5107 |
| TseFI | GTSAC | 3 cut(s) | 559, 2190, 5545 |
| TseI | GCWGC | 8 cut(s) | 104, 1516, 3809, 3892, 4259, 4568, 4634, 4856 |
| Tsp45I | GTSAC | 3 cut(s) | 559, 2190, 5545 |
| TspGWI | ACGGA | 3 cut(s) | 605, 2760, 4354 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1526, 2158 |
| Vha464I | CTTAAG | 1 cut(s) | 388 |
| VneI | GTGCAC | 1 cut(s) | 5218 |
| VpaK11BI | GGWCC | 5 cut(s) | 345, 2431, 4524, 4622, 5017 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 2965, 3438, 5171 |
| XapI | RAATTY | 8 cut(s) | 213, 274, 488, 1481, 1820, 2333, 3241, 5435 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1268, 1426, 1697, 4301 |
| XmiI | GTMKAC | 3 cut(s) | 2913, 3024, 5238 |
| XmnI | GAANNNNTTC | 1 cut(s) | 4890 |
| XspI | CTAG | 6 cut(s) | 219, 2075, 3599, 3915, 4446, 5264 |
| ZraI | GACGTC | 1 cut(s) | 777 |
| ZrmI | AGTACT | 2 cut(s) | 4424, 4539 |
| Zsp2I | ATGCAT | 1 cut(s) | 5053 |