Rh2DG519200

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000160
Physical Location & Seq
Reverse (-)
74263402 .. 74281832
18431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG519200.1

Sequence Viewer

Length: 435 bp
ATGCTCCAGGTTTTTAGATGTTCAAATCTCTCGTTGGCCACTTATTATGCCGCCGCACAACAACTGCTTAGTTGTTTTCATGATGTGGAATTTCACCATCTTCCGCGAGAACTCAATCGTGAAGCGAATGAAATGGCTCAAATTGCTTCCGGCGTCAGCATTCCAGCAGGCCAAACCAACAAAATCATCACAATTGAGAGAAAATCGTTGCCATCTTTGGCCGAGAGAGTCTGGGCTCTTGTTATCAGCTCTCCGAGCCAGCCAACACCCATGGAACTATCATCTTTCCACCCAATAGGCCCATGGTACCAAGAAACAGCTCTTGTGCACAATTACGAAGTCCACACACGAAGCCCAAAACGGAAAAACACCTCCGAAAGCACCCAAGCCATAACAAACCGCCACTGGCCACCACCACCATCAAATATGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

144

Amino Acids

16.26

Weight (kDa)

7.89

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 306
AccII CGCG 1 cut(s) 106
AciI CCGC 4 cut(s) 51, 54, 104, 400
AcoI YGGCCR 3 cut(s) 36, 219, 407
AcsI RAATTY 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 1 cut(s) 24
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 249, 320
AluI AGCT 2 cut(s) 249, 320
Alw21I GWGCWC 1 cut(s) 330
Alw44I GTGCAC 1 cut(s) 326
AoxI GGCC 5 cut(s) 36, 169, 219, 298, 407
ApaLI GTGCAC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 89
Asp718I GGTACC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 330
BalI TGGCCA 2 cut(s) 38, 409
BanI GGYRCC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 238
Bbv12I GWGCWC 1 cut(s) 330
BccI CCATC 3 cut(s) 105, 220, 427
BciT130I CCWGG 1 cut(s) 8
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 270, 302
Bse1I ACTGG 1 cut(s) 410
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 270, 302
BseNI ACTGG 1 cut(s) 410
BseSI GKGCMC 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 5 cut(s) 38, 171, 221, 300, 409
BshNI GGYRCC 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 150
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 5 cut(s) 38, 171, 221, 300, 409
Bsp1286I GDGCHC 2 cut(s) 238, 330
Bsp19I CCATGG 2 cut(s) 270, 302
BspACI CCGC 4 cut(s) 51, 54, 104, 400
BspANI GGCC 5 cut(s) 38, 171, 221, 300, 409
BspFNI CGCG 1 cut(s) 106
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 270, 302
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 270, 302
Bst2UI CCWGG 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 169, 260
BstDEI CTNAG 1 cut(s) 68
BstDSI CCRYGG 2 cut(s) 270, 302
BstFNI CGCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 143, 255
BstNI CCWGG 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 1 cut(s) 106
BsuRI GGCC 5 cut(s) 38, 171, 221, 300, 409
BtgI CCRYGG 2 cut(s) 270, 302
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 2 cut(s) 169, 260
CciI TCATGA 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 299
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 80, 271, 303
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 68
EaeI YGGCCR 3 cut(s) 36, 219, 407
Eco130I CCWWGG 2 cut(s) 270, 302
Eco24I GRGCYC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 270, 302
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 270, 302
FaeI CATG 3 cut(s) 83, 274, 306
FaiI YATR 7 cut(s) 48, 81, 272, 304, 392, 428, 433
FatI CATG 3 cut(s) 79, 270, 302
Fnu4HI GCNGC 2 cut(s) 51, 54
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 51, 54
GluI GCNGC 2 cut(s) 51, 54
HaeIII GGCC 5 cut(s) 38, 171, 221, 300, 409
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 142
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 3 cut(s) 83, 274, 306
HinfI GANTC 1 cut(s) 228
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 328, 343
Hpy188I TCNGA 2 cut(s) 255, 376
Hpy188III TCNNGA 2 cut(s) 80, 119
Hpy8I GTNNAC 2 cut(s) 328, 343
HpyCH4V TGCA 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 255
HpyF3I CTNAG 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 3 cut(s) 83, 274, 306
KpnI GGTACC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 7 cut(s) 20, 153, 163, 177, 217, 272, 391
MboII GAAGA 1 cut(s) 92
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 238, 330
MlsI TGGCCA 2 cut(s) 38, 409
MluCI AATT 4 cut(s) 89, 141, 192, 331
MluNI TGGCCA 2 cut(s) 38, 409
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 1 cut(s) 382
Mox20I TGGCCA 2 cut(s) 38, 409
MscI TGGCCA 2 cut(s) 38, 409
Msp20I TGGCCA 2 cut(s) 38, 409
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 1 cut(s) 159
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 143, 255
NcoI CCATGG 2 cut(s) 270, 302
NlaIII CATG 3 cut(s) 83, 274, 306
NlaIV GGNNCC 1 cut(s) 308
NmeAIII GCCGAG 1 cut(s) 247
PagI TCATGA 1 cut(s) 79
PctI GAATGC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 52, 55
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 6
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 299
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SatI GCNGC 2 cut(s) 51, 54
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 2 cut(s) 238, 330
SetI ASST 4 cut(s) 12, 251, 322, 374
Sse9I AATT 4 cut(s) 89, 141, 192, 331
SsiI CCGC 4 cut(s) 51, 54, 104, 400
StyD4I CCNGG 1 cut(s) 6
StyI CCWWGG 2 cut(s) 270, 302
TasI AATT 4 cut(s) 89, 141, 192, 331
TauI GCSGC 2 cut(s) 53, 56
TscAI CASTG 1 cut(s) 410
TspDTI ATGAA 2 cut(s) 68, 144
TspGWI ACGGA 1 cut(s) 376
TspRI CASTG 1 cut(s) 410
VneI GTGCAC 1 cut(s) 326
XapI RAATTY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.