Rw5G046750

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000160
Physical Location & Seq
Forward (+)
81027012 .. 81029140
2129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046750.1

Sequence Viewer

Length: 1644 bp
ATGGAAAAGCTGTGCTTAACCCTATACTTTTCGGCGTGCAAGTTGCGACATTATATGTTATCCTTTACTACTTGCATCATCGCTCAGACCGATTTGGTCAAGTATATGTTATCCCGGCCTATCTTGAGGGGCCGCATTGGCAAATGGGTATTGGCACTTTCAGAGTTCTCGCTCCAGTATGTACCCCAAAAGGCGGTCAAAGGGCAGGCTATCGCAGATTTTCTAGCGCATCATCCTCCGCTAGAGCTACCCGTACTGAAAGAGTTGGAAATTGCTTGCAACACCGCGACTCTTCCAGATAAAGCATGCATCCCGGAATACGCGGTCTGGTATCAGGCTACAATCACTTTACAGCCCTGGGTGTTATTCTTTGATGGCTCAAGAACGGACGCTATGGCTGGCGCGGGGATTGTGTTGGAAAACCCGGCAGGTGATCGGTTCTCTTATTCTTTCCAGCTCACGTTCCAATGTACTAATAATCAGGCTGAGTATGAGGCTCTTATCATTGGACTCGAAGTCTTGCTGGAAATGGGCGTCCGGGACGTTCAGATTCGCGGAGATTCTCAGCTCGTTATCAATCAACTTCTGGAAAAATATCGCTGTACGAGTTGGCTGCTCATCCCATACTTGAATCGTGCCATTGAGCTTTTGGACCAGTTTACAGACGTCGACATGGAACACATACCACGTGAGCGTAACTTTGCTGCTAATGAGCTAGCTCAGTTGGCTACAGGCATTACTTTGAGGTATGGAGTGCGCGAGCGCATTCTGAAAGTTGAGCGTCGCACGCTACCTTCGTGGCTGGCTCGACCTGATCCTCCAGATGATCCCATGGTCGCGGCACTGGAACCCATTGATGTCGATTGGCGGCTCCCACTGATTGAATACCTCAAACAACCAGACTCCAGCGCTGATAGGAAGATTTGTTTCCTCGCATTGAATTACTTCCTTAGAGGTGACGAACTGCGCAGGCGTGGAGAAGATGGTATAGACTTTCGATGTGTCTACGGTCGCGAAGCTAAGAGATTGATGCGCGAGGTGCACATGGGAATATGTGGATCTCATCAAGCTGGACCCAAGATGCGTTGGCTCATCCGACGTCATGGTTATTACTGGCCCAGCATTTTGAAGGATTGTATTGCATTCGCCAAAGGCTGTGCGGACTGTCAGGCACACGGTCCTGTCCAGCATGTTCCTAACATCCCTATGCAACCCATTATTAAACCCTGGCCTGCGCGAGGCTGGGCACTGGACTTGATTGGGATGATCCATCCTCATTCTTCCCTACAGCACAAGTTTATCATCGTCGCCACTGATTACTTCACGAAGTGGGTTGAAGCGGAGCCTCTCAAGGAGGCCTCCGGTGCTACCATTCGCCAGTTTATTTTCCGTAATATTCTCTGCAGGTTTGGTATCCCTGAAGTCCTGAAGGTAACCGGTCGTGGAAAATGGACGCCACGATGGGAGGGGCCTTTTGTTATCCACCGCATACTGGAGCGCGGTGCTTTTCACCTCAAAGACGTCGACGGTGATATCCATCGCAACCCCATTAACGGTCGTTTTCTGAAGAAATACTATCCAAGTGTCTGGGAGTTCGACGATCCCCCAGACCCCGTTCTTGCTCAGGCTGGGGGGCAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

547

Amino Acids

62.71

Weight (kDa)

8.29

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 121 - 234 2.3e-06 RNase H
RVT_3 PF13456 124 - 242 8.6e-21 Reverse transcriptase-like
Integrase_H2C2 PF17921 339 - 392 9.9e-08 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
AatII GACGTC 3 cut(s) 669, 1102, 1524
Acc16I TGCGCA 1 cut(s) 968
Acc36I ACCTGC 2 cut(s) 419, 1395
AccI GTMKAC 3 cut(s) 669, 1005, 1524
AclWI GGATC 5 cut(s) 809, 821, 1066, 1261, 1595
AcuI CTGAAG 3 cut(s) 1440, 1448, 1586
AcvI CACGTG 1 cut(s) 689
AcyI GRCGYC 5 cut(s) 534, 666, 1099, 1454, 1521
AdeI CACNNNGTG 1 cut(s) 1329
AfaI GTAC 4 cut(s) 183, 255, 472, 604
AfeI AGCGCT 1 cut(s) 910
AfiI CCNNNNNNNGG 4 cut(s) 193, 1238, 1492, 1553
AgeI ACCGGT 1 cut(s) 1436
AgsI TTSAA 5 cut(s) 631, 884, 940, 1129, 1337
AhdI GACNNNNNGTC 1 cut(s) 515
AjnI CCWGG 2 cut(s) 356, 1226
AluBI AGCT 9 cut(s) 10, 247, 457, 568, 646, 715, 719, 1019, 1070
AluI AGCT 9 cut(s) 10, 247, 457, 568, 646, 715, 719, 1019, 1070
Alw21I GWGCWC 1 cut(s) 1044
Alw44I GTGCAC 1 cut(s) 1040
AlwI GGATC 5 cut(s) 809, 821, 1066, 1261, 1595
Aor51HI AGCGCT 1 cut(s) 910
AoxI GGCC 6 cut(s) 116, 130, 1115, 1229, 1356, 1469
ApaLI GTGCAC 1 cut(s) 1040
ApeKI GCWGC 2 cut(s) 613, 704
AsiGI ACCGGT 1 cut(s) 1436
Asp700I GAANNNNTTC 1 cut(s) 944
AspLEI GCGC 9 cut(s) 229, 404, 759, 765, 911, 969, 1035, 1237, 1500
AspS9I GGNCC 6 cut(s) 130, 652, 1073, 1116, 1178, 1469
AsuC2I CCSGG 4 cut(s) 115, 314, 425, 539
AsuHPI GGTGA 4 cut(s) 443, 968, 1502, 1541
AsuNHI GCTAGC 1 cut(s) 715
AvaII GGWCC 3 cut(s) 652, 1073, 1178
BaeGI GKGCMC 2 cut(s) 1044, 1249
BbrPI CACGTG 1 cut(s) 689
Bbv12I GWGCWC 1 cut(s) 1044
BbvI GCAGC 2 cut(s) 600, 691
BccI CCATC 5 cut(s) 368, 977, 1278, 1455, 1545
BcgI CGANNNNNNTGC 2 cut(s) 595, 629
BciT130I CCWGG 2 cut(s) 358, 1228
BciVI GTATCC 1 cut(s) 1424
BcnI CCSGG 4 cut(s) 115, 314, 425, 539
BfaI CTAG 3 cut(s) 224, 242, 716
BfmI CTRYAG 3 cut(s) 729, 1286, 1402
BfoI RGCGCY 1 cut(s) 912
BfuAI ACCTGC 2 cut(s) 419, 1395
BfuI GTATCC 1 cut(s) 1424
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 5 cut(s) 133, 614, 705, 840, 869
BlsI GCNGC 5 cut(s) 134, 615, 706, 841, 870
Bme1390I CCNGG 6 cut(s) 115, 314, 358, 425, 539, 1228
Bme18I GGWCC 3 cut(s) 652, 1073, 1178
BmeRI GACNNNNNGTC 1 cut(s) 515
BmgT120I GGNCC 6 cut(s) 130, 652, 1073, 1116, 1178, 1469
BmiI GGNNCC 6 cut(s) 131, 849, 872, 1075, 1344, 1470
BmrFI CCNGG 6 cut(s) 115, 314, 358, 425, 539, 1228
BmsI GCATC 5 cut(s) 84, 238, 318, 1020, 1071
BmtI GCTAGC 1 cut(s) 719
BpmI CTGGAG 4 cut(s) 158, 804, 889, 1514
Bpu10I CCTNAGC 1 cut(s) 1623
BpuEI CTTGAG 3 cut(s) 145, 364, 1334
BpuMI CCSGG 4 cut(s) 115, 314, 425, 539
BsaAI YACGTR 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 1536
BsaHI GRCGYC 5 cut(s) 534, 666, 1099, 1454, 1521
BsaJI CCNNGG 4 cut(s) 356, 357, 831, 1226
BsaWI WCCGGW 2 cut(s) 1361, 1436
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 1238, 1492, 1553
Bse118I RCCGGY 1 cut(s) 1436
Bse1I ACTGG 7 cut(s) 175, 655, 849, 1118, 1254, 1378, 1497
Bse8I GATNNNNATC 1 cut(s) 1536
BseBI CCWGG 2 cut(s) 358, 1228
BseDI CCNNGG 4 cut(s) 356, 357, 831, 1226
BseGI GGATG 7 cut(s) 232, 309, 618, 1092, 1200, 1269, 1270
BseJI GATNNNNATC 1 cut(s) 1536
BseLI CCNNNNNNNGG 4 cut(s) 193, 1238, 1492, 1553
BseMII CTCAG 5 cut(s) 98, 477, 578, 734, 1637
BseNI ACTGG 7 cut(s) 175, 655, 849, 1118, 1254, 1378, 1497
BseSI GKGCMC 2 cut(s) 1044, 1249
BseXI GCAGC 2 cut(s) 600, 691
BseYI CCCAGC 3 cut(s) 1118, 1242, 1628
Bsh1285I CGRYCG 3 cut(s) 1012, 1441, 1558
BshFI GGCC 6 cut(s) 118, 132, 1117, 1231, 1358, 1471
BshTI ACCGGT 1 cut(s) 1436
BsiEI CGRYCG 3 cut(s) 1012, 1441, 1558
BsiHKAI GWGCWC 1 cut(s) 1044
BsiSI CCGG 6 cut(s) 115, 314, 425, 538, 1362, 1437
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 4 cut(s) 193, 1238, 1492, 1553
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 2 cut(s) 765, 1142
BsnI GGCC 6 cut(s) 118, 132, 1117, 1231, 1358, 1471
Bsp1286I GDGCHC 2 cut(s) 1044, 1249
Bsp143I GATC 6 cut(s) 433, 814, 826, 1058, 1266, 1600
Bsp19I CCATGG 1 cut(s) 831
Bsp68I TCGCGA 1 cut(s) 1014
BspANI GGCC 6 cut(s) 118, 132, 1117, 1231, 1358, 1471
BspCNI CTCAG 5 cut(s) 97, 478, 577, 733, 1636
BspLI GGNNCC 6 cut(s) 131, 849, 872, 1075, 1344, 1470
BspMAI CTGCAG 1 cut(s) 1406
BspMI ACCTGC 2 cut(s) 419, 1395
BspOI GCTAGC 1 cut(s) 719
BspPI GGATC 5 cut(s) 809, 821, 1066, 1261, 1595
BsrFI RCCGGY 1 cut(s) 1436
BsrI ACTGG 7 cut(s) 175, 655, 849, 1118, 1254, 1378, 1497
BssAI RCCGGY 1 cut(s) 1436
BssECI CCNNGG 4 cut(s) 356, 357, 831, 1226
BssMI GATC 6 cut(s) 433, 814, 826, 1058, 1266, 1600
BssNI GRCGYC 5 cut(s) 534, 666, 1099, 1454, 1521
BssT1I CCWWGG 1 cut(s) 831
Bst2UI CCWGG 2 cut(s) 358, 1228
Bst4CI ACNGT 5 cut(s) 1010, 1166, 1178, 1529, 1556
Bst6I CTCTTC 1 cut(s) 297
BstACI GRCGYC 5 cut(s) 534, 666, 1099, 1454, 1521
BstBAI YACGTR 1 cut(s) 689
BstDEI CTNAG 7 cut(s) 84, 486, 564, 720, 950, 1020, 1623
BstDSI CCRYGG 1 cut(s) 831
BstEII GGTNACC 1 cut(s) 1432
BstENI CCTNNNNNAGG 1 cut(s) 1236
BstF5I GGATG 7 cut(s) 232, 309, 618, 1092, 1200, 1269, 1270
BstH2I RGCGCY 1 cut(s) 912
BstHHI GCGC 9 cut(s) 229, 404, 759, 765, 911, 969, 1035, 1237, 1500
BstKTI GATC 6 cut(s) 436, 817, 829, 1061, 1269, 1603
BstMBI GATC 6 cut(s) 433, 814, 826, 1058, 1266, 1600
BstMCI CGRYCG 3 cut(s) 1012, 1441, 1558
BstMWI GCNNNNNNNGC 5 cut(s) 138, 725, 787, 1039, 1364
BstNI CCWGG 2 cut(s) 358, 1228
BstNSI RCATGY 2 cut(s) 309, 1193
BstPI GGTNACC 1 cut(s) 1432
BstSCI CCNGG 6 cut(s) 113, 312, 356, 423, 537, 1226
BstSFI CTRYAG 3 cut(s) 729, 1286, 1402
BstSLI GKGCMC 2 cut(s) 1044, 1249
BstV1I GCAGC 2 cut(s) 600, 691
BstX2I RGATCY 1 cut(s) 1058
BstXI CCANNNNNNTGG 1 cut(s) 1587
BstYI RGATCY 1 cut(s) 1058
BsuI GTATCC 1 cut(s) 1424
BsuRI GGCC 6 cut(s) 118, 132, 1117, 1231, 1358, 1471
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 2 cut(s) 64, 1523
BtsCI GGATG 7 cut(s) 232, 309, 618, 1092, 1200, 1269, 1270
BtsIMutI CAGTG 4 cut(s) 842, 875, 1247, 1311
BtuMI TCGCGA 1 cut(s) 1014
BveI ACCTGC 2 cut(s) 419, 1395
CfoI GCGC 9 cut(s) 229, 404, 759, 765, 911, 969, 1035, 1237, 1500
Cfr10I RCCGGY 1 cut(s) 1436
Cfr13I GGNCC 6 cut(s) 130, 652, 1073, 1116, 1178, 1469
CseI GACGC 4 cut(s) 398, 523, 770, 1462
Csp6I GTAC 4 cut(s) 182, 254, 471, 603
CspAI ACCGGT 1 cut(s) 1436
CviAII CATG 6 cut(s) 306, 673, 832, 1045, 1103, 1190
CviQI GTAC 4 cut(s) 182, 254, 471, 603
DdeI CTNAG 7 cut(s) 84, 486, 564, 720, 950, 1020, 1623
DpnI GATC 6 cut(s) 435, 816, 828, 1060, 1268, 1602
DpnII GATC 6 cut(s) 433, 814, 826, 1058, 1266, 1600
DraIII CACNNNGTG 1 cut(s) 1329
DriI GACNNNNNGTC 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 297
Eam1105I GACNNNNNGTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 831
Eco147I AGGCCT 1 cut(s) 1358
Eco32I GATATC 1 cut(s) 1534
Eco47I GGWCC 3 cut(s) 652, 1073, 1178
Eco47III AGCGCT 1 cut(s) 910
Eco57I CTGAAG 3 cut(s) 1440, 1448, 1586
Eco72I CACGTG 1 cut(s) 689
Eco91I GGTNACC 1 cut(s) 1432
EcoNI CCTNNNNNAGG 1 cut(s) 1236
EcoO109I RGGNCCY 1 cut(s) 1469
EcoO65I GGTNACC 1 cut(s) 1432
EcoRII CCWGG 2 cut(s) 356, 1226
EcoRV GATATC 1 cut(s) 1534
EcoT14I CCWWGG 1 cut(s) 831
EcoT22I ATGCAT 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 831
FaeI CATG 6 cut(s) 309, 676, 835, 1048, 1106, 1193
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 554
FatI CATG 6 cut(s) 305, 672, 831, 1044, 1102, 1189
FauI CCCGC 1 cut(s) 397
FblI GTMKAC 3 cut(s) 669, 1005, 1524
Fnu4HI GCNGC 5 cut(s) 133, 614, 705, 840, 869
FokI GGATG 7 cut(s) 219, 296, 605, 1079, 1187, 1257, 1276
Fsp4HI GCNGC 5 cut(s) 133, 614, 705, 840, 869
FspBI CTAG 3 cut(s) 224, 242, 716
FspI TGCGCA 1 cut(s) 968
GlaI GCGC 9 cut(s) 228, 403, 758, 764, 910, 968, 1034, 1236, 1499
GluI GCNGC 5 cut(s) 133, 614, 705, 840, 869
GsaI CCCAGC 3 cut(s) 1122, 1246, 1632
GsuI CTGGAG 4 cut(s) 158, 804, 889, 1514
HaeII RGCGCY 1 cut(s) 912
HaeIII GGCC 6 cut(s) 118, 132, 1117, 1231, 1358, 1471
HapII CCGG 6 cut(s) 115, 314, 425, 538, 1362, 1437
HgaI GACGC 4 cut(s) 398, 523, 770, 1462
HhaI GCGC 9 cut(s) 229, 404, 759, 765, 911, 969, 1035, 1237, 1500
Hin1I GRCGYC 5 cut(s) 534, 666, 1099, 1454, 1521
Hin1II CATG 6 cut(s) 309, 676, 835, 1048, 1106, 1193
Hin6I GCGC 9 cut(s) 227, 402, 757, 763, 909, 967, 1033, 1235, 1498
HinP1I GCGC 9 cut(s) 227, 402, 757, 763, 909, 967, 1033, 1235, 1498
HincII GTYRAC 2 cut(s) 670, 1525
HindII GTYRAC 2 cut(s) 670, 1525
HinfI GANTC 6 cut(s) 289, 510, 550, 560, 631, 902
HpaII CCGG 6 cut(s) 115, 314, 425, 538, 1362, 1437
HphI GGTGA 4 cut(s) 443, 968, 1502, 1541
Hpy166II GTNNAC 5 cut(s) 660, 670, 1006, 1042, 1525
Hpy188I TCNGA 6 cut(s) 87, 163, 549, 771, 1097, 1566
Hpy188III TCNNGA 8 cut(s) 124, 296, 381, 587, 821, 1013, 1324, 1426
Hpy8I GTNNAC 5 cut(s) 660, 670, 1006, 1042, 1525
Hpy99I CGWCG 7 cut(s) 671, 786, 1101, 1310, 1526, 1529, 1601
HpyAV CCTTC 3 cut(s) 804, 1123, 1423
HpyCH4III ACNGT 5 cut(s) 1010, 1166, 1178, 1529, 1556
HpyCH4IV ACGT 6 cut(s) 461, 543, 666, 688, 1099, 1521
HpyCH4V TGCA 8 cut(s) 39, 75, 279, 309, 1042, 1142, 1210, 1404
HpyF10VI GCNNNNNNNGC 5 cut(s) 138, 725, 787, 1039, 1364
HpyF3I CTNAG 7 cut(s) 84, 486, 564, 720, 950, 1020, 1623
HpySE526I ACGT 6 cut(s) 461, 543, 666, 688, 1099, 1521
Hsp92I GRCGYC 5 cut(s) 534, 666, 1099, 1454, 1521
Hsp92II CATG 6 cut(s) 309, 676, 835, 1048, 1106, 1193
HspAI GCGC 9 cut(s) 227, 402, 757, 763, 909, 967, 1033, 1235, 1498
Kzo9I GATC 6 cut(s) 433, 814, 826, 1058, 1266, 1600
LmnI GCTCC 4 cut(s) 177, 876, 1342, 1495
Lsp1109I GCAGC 2 cut(s) 600, 691
LweI GCATC 5 cut(s) 84, 238, 318, 1020, 1071
MaeI CTAG 3 cut(s) 224, 242, 716
MaeII ACGT 6 cut(s) 461, 543, 666, 688, 1099, 1521
MaeIII GTNAC 3 cut(s) 695, 956, 1432
MalI GATC 6 cut(s) 435, 816, 828, 1060, 1268, 1602
MboI GATC 6 cut(s) 433, 814, 826, 1058, 1266, 1600
MboII GAAGA 5 cut(s) 284, 931, 992, 1272, 1579
MflI RGATCY 1 cut(s) 1058
MhlI GDGCHC 2 cut(s) 1044, 1249
MluCI AATT 2 cut(s) 270, 940
MlyI GAGTC 3 cut(s) 283, 504, 896
MmeI TCCRAC 3 cut(s) 246, 396, 1120
Mph1103I ATGCAT 1 cut(s) 311
MroXI GAANNNNTTC 1 cut(s) 944
MseI TTAA 4 cut(s) 17, 1221, 1551, 1642
MslI CAYNNNNRTG 1 cut(s) 1205
MspI CCGG 6 cut(s) 115, 314, 425, 538, 1362, 1437
MspR9I CCNGG 6 cut(s) 115, 314, 358, 425, 539, 1228
Mva1269I GAATGC 2 cut(s) 765, 1142
MvaI CCWGG 2 cut(s) 358, 1228
MwoI GCNNNNNNNGC 5 cut(s) 138, 725, 787, 1039, 1364
NciI CCSGG 4 cut(s) 115, 314, 425, 539
NcoI CCATGG 1 cut(s) 831
NdeII GATC 6 cut(s) 433, 814, 826, 1058, 1266, 1600
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 6 cut(s) 309, 676, 835, 1048, 1106, 1193
NlaIV GGNNCC 6 cut(s) 131, 849, 872, 1075, 1344, 1470
NmuCI GTSAC 1 cut(s) 956
NruI TCGCGA 1 cut(s) 1014
NsbI TGCGCA 1 cut(s) 968
NsiI ATGCAT 1 cut(s) 311
NspI RCATGY 2 cut(s) 309, 1193
PaeI GCATGC 1 cut(s) 309
PaqCI CACCTGC 1 cut(s) 419
PasI CCCWGGG 1 cut(s) 357
PceI AGGCCT 1 cut(s) 1358
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 794
PctI GAATGC 2 cut(s) 765, 1142
PdmI GAANNNNTTC 1 cut(s) 944
PfeI GAWTC 3 cut(s) 550, 560, 631
PfoI TCCNGGA 2 cut(s) 312, 537
PinAI ACCGGT 1 cut(s) 1436
PkrI GCNGC 5 cut(s) 134, 615, 706, 841, 870
PleI GAGTC 3 cut(s) 283, 504, 896
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
PpsI GAGTC 3 cut(s) 283, 504, 896
Ppu21I YACGTR 1 cut(s) 689
Psp6I CCWGG 2 cut(s) 356, 1226
PspCI CACGTG 1 cut(s) 689
PspEI GGTNACC 1 cut(s) 1432
PspFI CCCAGC 3 cut(s) 1118, 1242, 1628
PspGI CCWGG 2 cut(s) 356, 1226
PspN4I GGNNCC 6 cut(s) 131, 849, 872, 1075, 1344, 1470
PspPI GGNCC 6 cut(s) 130, 652, 1073, 1116, 1178, 1469
PstI CTGCAG 1 cut(s) 1406
PsuI RGATCY 1 cut(s) 1058
RruI TCGCGA 1 cut(s) 1014
RsaI GTAC 4 cut(s) 183, 255, 472, 604
RsaNI GTAC 4 cut(s) 182, 254, 471, 603
RseI CAYNNNNRTG 1 cut(s) 1205
SalI GTCGAC 2 cut(s) 668, 1523
SaqAI TTAA 4 cut(s) 17, 1221, 1551, 1642
SatI GCNGC 5 cut(s) 133, 614, 705, 840, 869
Sau3AI GATC 6 cut(s) 433, 814, 826, 1058, 1266, 1600
Sau96I GGNCC 6 cut(s) 130, 652, 1073, 1116, 1178, 1469
SchI GAGTC 3 cut(s) 283, 504, 896
ScrFI CCNGG 6 cut(s) 115, 314, 358, 425, 539, 1228
SduI GDGCHC 2 cut(s) 1044, 1249
SfaNI GCATC 5 cut(s) 84, 238, 318, 1020, 1071
SfcI CTRYAG 3 cut(s) 729, 1286, 1402
SgrDI CGTCGACG 1 cut(s) 1523
SinI GGWCC 3 cut(s) 652, 1073, 1178
SmiMI CAYNNNNRTG 1 cut(s) 1205
SmlI CTYRAG 3 cut(s) 124, 379, 1349
SmoI CTYRAG 3 cut(s) 124, 379, 1349
SphI GCATGC 1 cut(s) 309
Sse9I AATT 2 cut(s) 270, 940
SseBI AGGCCT 1 cut(s) 1358
SspI AATATT 1 cut(s) 1396
SspMI CTAG 3 cut(s) 224, 242, 716
StuI AGGCCT 1 cut(s) 1358
StyD4I CCNGG 6 cut(s) 113, 312, 356, 423, 537, 1226
StyI CCWWGG 1 cut(s) 831
TaaI ACNGT 5 cut(s) 1010, 1166, 1178, 1529, 1556
TaiI ACGT 6 cut(s) 464, 546, 669, 691, 1102, 1524
TaqI TCGA 7 cut(s) 513, 669, 808, 861, 997, 1524, 1596
TaqII GACCGA 1 cut(s) 104
TasI AATT 2 cut(s) 270, 940
TatI WGTACW 1 cut(s) 470
TauI GCSGC 3 cut(s) 135, 842, 871
TfiI GAWTC 3 cut(s) 550, 560, 631
Tru1I TTAA 4 cut(s) 17, 1221, 1551, 1642
Tru9I TTAA 4 cut(s) 17, 1221, 1551, 1642
TscAI CASTG 4 cut(s) 849, 882, 1254, 1318
TseFI GTSAC 1 cut(s) 956
TseI GCWGC 2 cut(s) 613, 704
Tsp45I GTSAC 1 cut(s) 956
TspGWI ACGGA 2 cut(s) 401, 1379
TspRI CASTG 4 cut(s) 849, 882, 1254, 1318
VneI GTGCAC 1 cut(s) 1040
VpaK11BI GGWCC 3 cut(s) 652, 1073, 1178
XagI CCTNNNNNAGG 1 cut(s) 1236
XceI RCATGY 2 cut(s) 309, 1193
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmiI GTMKAC 3 cut(s) 669, 1005, 1524
XmnI GAANNNNTTC 1 cut(s) 944
XspI CTAG 3 cut(s) 224, 242, 716
ZraI GACGTC 3 cut(s) 667, 1100, 1522
Zsp2I ATGCAT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.