FvH4_2g11612

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000160
Physical Location & Seq
Reverse (-)
10147975 .. 10149140
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11612.t1

Sequence Viewer

Length: 1017 bp
ATGGAAGCCACCAATGAAGCACATGTGGTCTCAGTGTTCGAAGTTGAGGAAGAGTCTGATTGGCATATGGACATGGTCAAGAGGTCCTTCGATGGAATGCTCTTGAGGTGTTTATCAAAAGAAGAGGGAGTTGAAGCTCTTAAAGATGCCCATGCTGGAACATGCGGAGCTCACCAAGCTGGTCCAAAATTGGCAGCCCAATTGAAGAGAATAGGTTATTATTGGCCATCAATGGTACAAGACTCAATAAATTATGCACAATCATGCAAGGCGTGCCAATTACATGGAGATTTTATACACCAACCTCCACTACCTCTTCATCCCACAACTCTCTCGTACCCCTTCGAAACATGGGGGTTGGATGTTGTGGGTGTCATAACTCCTAAATCCTCACGCCTGCACCAGTACATATTGGCTGCAACAGACTACTTTTCTAAAAGGAGTGAGGCAATTCCTCTCAAAGCAGTGAAAGCGGAGGATGTTGCAAAATTTATCAAGACTCACATCATCTATCGCTTCGGAGTTCCCTCCAAGATAATATCTGACAATGCTTCGTATTTCAAGTGCAAGGCCATGGTCACAATGTGTGAGAAGTATAACATCCAGCATGCATTTTCGTCCAGCTACAACCCAACAGCTAATGGTCAAGCAGAGGCATTCAATAAAACTGGCATGACCGTCTCCCTGAGGCATAATCGGACCACCGTTCGCACAGCAACTGGTTGTACTCCATTCAACTTGGTCTATGGGTCTGAAGTGGTTTTGCCATTAGAAGTCCAATTGCCTTCTTTAAGGATAGCTACAATGTTGACAAATCCAGATGAAAACGCACAAGTCAGACTAGCAGAGCTTGAAGCACTTGATGAGAAGAGACTTGCAGTTCAACAAAAACTTGAAATTTACCAAGCTCAAGTTGCAGGTGCTTTCAACAAGAAAGTTAAGTTCAGGTCGTTCAAAATTGGTCTTAACAGTCAGAAGGCCCATCATCGTCACCAGGAAGTCAAAGGGAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

339

Amino Acids

37.85

Weight (kDa)

8.81

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 45 - 95 5.1e-08 Integrase zinc binding domain
rve PF00665 114 - 211 2.2e-12 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 908
Acc36I ACCTGC 1 cut(s) 908
AciI CCGC 2 cut(s) 165, 473
AcoI YGGCCR 1 cut(s) 224
AcsI RAATTY 2 cut(s) 488, 897
AcuI CTGAAG 1 cut(s) 774
AdeI CACNNNGTG 1 cut(s) 585
AfaI GTAC 4 cut(s) 237, 338, 407, 727
AflIII ACRYGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 993
AluBI AGCT 8 cut(s) 137, 170, 179, 624, 638, 800, 850, 908
AluI AGCT 8 cut(s) 137, 170, 179, 624, 638, 800, 850, 908
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 3 cut(s) 34, 685, 865
AlwNI CAGNNNCTG 1 cut(s) 719
AoxI GGCC 3 cut(s) 224, 570, 978
ApeKI GCWGC 2 cut(s) 194, 416
ApoI RAATTY 2 cut(s) 488, 897
AspS9I GGNCC 4 cut(s) 84, 182, 699, 979
AsuHPI GGTGA 2 cut(s) 164, 983
AsuII TTCGAA 2 cut(s) 39, 345
AvaII GGWCC 3 cut(s) 84, 182, 699
AxyI CCTNAGG 1 cut(s) 686
BalI TGGCCA 1 cut(s) 226
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 2 cut(s) 206, 403
BccI CCATC 3 cut(s) 86, 235, 990
BciT130I CCWGG 1 cut(s) 995
BcoDI GTCTC 3 cut(s) 34, 685, 865
BfaI CTAG 1 cut(s) 842
BfuAI ACCTGC 1 cut(s) 908
BisI GCNGC 2 cut(s) 195, 417
BlsI GCNGC 2 cut(s) 196, 418
Bme1390I CCNGG 1 cut(s) 995
Bme18I GGWCC 3 cut(s) 84, 182, 699
BmgT120I GGNCC 4 cut(s) 84, 182, 699, 979
BmrFI CCNGG 1 cut(s) 995
BmsI GCATC 1 cut(s) 136
Bpu14I TTCGAA 2 cut(s) 39, 345
BpuEI CTTGAG 2 cut(s) 124, 894
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 1 cut(s) 573
Bse1I ACTGG 3 cut(s) 403, 673, 724
Bse21I CCTNAGG 1 cut(s) 686
BseBI CCWGG 1 cut(s) 995
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 4 cut(s) 319, 367, 484, 600
BseMII CTCAG 2 cut(s) 45, 677
BseNI ACTGG 3 cut(s) 403, 673, 724
BseXI GCAGC 2 cut(s) 206, 403
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 3 cut(s) 226, 572, 980
BsiHKAI GWGCWC 1 cut(s) 172
BsmAI GTCTC 3 cut(s) 34, 685, 865
BsmBI CGTCTC 1 cut(s) 685
BsmI GAATGC 2 cut(s) 102, 656
BsnI GGCC 3 cut(s) 226, 572, 980
Bso31I GGTCTC 1 cut(s) 34
Bsp119I TTCGAA 2 cut(s) 39, 345
Bsp1286I GDGCHC 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 2 cut(s) 165, 473
BspANI GGCC 3 cut(s) 226, 572, 980
BspCNI CTCAG 2 cut(s) 44, 678
BspMI ACCTGC 1 cut(s) 908
BspT104I TTCGAA 2 cut(s) 39, 345
BspTNI GGTCTC 1 cut(s) 34
BsrI ACTGG 3 cut(s) 403, 673, 724
BssECI CCNNGG 1 cut(s) 573
BssT1I CCWWGG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 995
Bst4CI ACNGT 3 cut(s) 679, 706, 971
Bst6I CTCTTC 5 cut(s) 45, 117, 200, 321, 863
BstAPI GCANNNNNTGC 1 cut(s) 273
BstBI TTCGAA 2 cut(s) 39, 345
BstC8I GCNNGC 3 cut(s) 274, 398, 609
BstDEI CTNAG 2 cut(s) 31, 686
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 4 cut(s) 319, 367, 484, 600
BstMAI GTCTC 3 cut(s) 34, 685, 865
BstMWI GCNNNNNNNGC 4 cut(s) 176, 273, 470, 914
BstNI CCWGG 1 cut(s) 995
BstNSI RCATGY 3 cut(s) 26, 165, 611
BstSCI CCNGG 1 cut(s) 993
BstV1I GCAGC 2 cut(s) 206, 403
BstXI CCANNNNNNTGG 1 cut(s) 284
Bsu36I CCTNAGG 1 cut(s) 686
BsuRI GGCC 3 cut(s) 226, 572, 980
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 4 cut(s) 319, 367, 484, 600
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 39, 471
BveI ACCTGC 1 cut(s) 908
Cac8I GCNNGC 3 cut(s) 274, 398, 609
CaiI CAGNNNCTG 1 cut(s) 719
Cfr13I GGNCC 4 cut(s) 84, 182, 699, 979
Csp6I GTAC 4 cut(s) 236, 337, 406, 726
CviQI GTAC 4 cut(s) 236, 337, 406, 726
DdeI CTNAG 2 cut(s) 31, 686
DraIII CACNNNGTG 1 cut(s) 585
EaeI YGGCCR 1 cut(s) 224
Eam1104I CTCTTC 5 cut(s) 45, 117, 200, 321, 863
EarI CTCTTC 5 cut(s) 45, 117, 200, 321, 863
Ecl136II GAGCTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 34
Eco47I GGWCC 3 cut(s) 84, 182, 699
Eco53kI GAGCTC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 774
Eco81I CCTNAGG 1 cut(s) 686
EcoICRI GAGCTC 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 993
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 573
Esp3I CGTCTC 1 cut(s) 685
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FauNDI CATATG 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 195, 417
FokI GGATG 4 cut(s) 306, 374, 491, 587
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 2 cut(s) 195, 417
FspBI CTAG 1 cut(s) 842
GluI GCNGC 2 cut(s) 195, 417
HaeIII GGCC 3 cut(s) 226, 572, 980
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HinfI GANTC 3 cut(s) 53, 242, 499
HphI GGTGA 2 cut(s) 164, 983
Hpy166II GTNNAC 1 cut(s) 810
Hpy188I TCNGA 7 cut(s) 58, 521, 544, 699, 754, 839, 975
Hpy188III TCNNGA 4 cut(s) 79, 103, 496, 818
Hpy8I GTNNAC 1 cut(s) 810
HpyAV CCTTC 4 cut(s) 97, 352, 795, 970
HpyCH4III ACNGT 3 cut(s) 679, 706, 971
HpyCH4V TGCA 9 cut(s) 257, 267, 400, 419, 485, 567, 611, 878, 917
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 273, 470, 914
HpyF3I CTNAG 2 cut(s) 31, 686
LmnI GCTCC 1 cut(s) 167
Lsp1109I GCAGC 2 cut(s) 206, 403
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 842
MaeIII GTNAC 2 cut(s) 577, 989
MboII GAAGA 5 cut(s) 62, 134, 217, 308, 880
MfeI CAATTG 2 cut(s) 200, 779
MhlI GDGCHC 1 cut(s) 172
MlsI TGGCCA 1 cut(s) 226
MluCI AATT 9 cut(s) 188, 200, 250, 278, 450, 488, 779, 897, 957
MluNI TGGCCA 1 cut(s) 226
MlyI GAGTC 3 cut(s) 62, 236, 493
MmeI TCCRAC 1 cut(s) 339
Mox20I TGGCCA 1 cut(s) 226
Mph1103I ATGCAT 1 cut(s) 613
MscI TGGCCA 1 cut(s) 226
MseI TTAA 4 cut(s) 141, 791, 939, 966
MslI CAYNNNNRTG 1 cut(s) 262
Msp20I TGGCCA 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 995
MunI CAATTG 2 cut(s) 200, 779
Mva1269I GAATGC 2 cut(s) 102, 656
MvaI CCWGG 1 cut(s) 995
MwoI GCNNNNNNNGC 4 cut(s) 176, 273, 470, 914
NcoI CCATGG 1 cut(s) 573
NdeI CATATG 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 577, 989
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 3 cut(s) 26, 165, 611
NspV TTCGAA 2 cut(s) 39, 345
PaeI GCATGC 1 cut(s) 611
PaqCI CACCTGC 1 cut(s) 908
PciI ACATGT 1 cut(s) 22
PctI GAATGC 2 cut(s) 102, 656
PflFI GACNNNGTC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 196, 418
PleI GAGTC 3 cut(s) 61, 236, 493
PpsI GAGTC 3 cut(s) 61, 236, 493
PpuMI RGGWCCY 1 cut(s) 84
PscI ACATGT 1 cut(s) 22
Psp124BI GAGCTC 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 993
PspGI CCWGG 1 cut(s) 993
PspPI GGNCC 4 cut(s) 84, 182, 699, 979
PspPPI RGGWCCY 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 719
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 4 cut(s) 237, 338, 407, 727
RsaNI GTAC 4 cut(s) 236, 337, 406, 726
RseI CAYNNNNRTG 1 cut(s) 262
SacI GAGCTC 1 cut(s) 172
SaqAI TTAA 4 cut(s) 141, 791, 939, 966
SatI GCNGC 2 cut(s) 195, 417
Sau96I GGNCC 4 cut(s) 84, 182, 699, 979
SchI GAGTC 3 cut(s) 62, 236, 493
ScrFI CCNGG 1 cut(s) 995
SduI GDGCHC 1 cut(s) 172
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 2 cut(s) 39, 345
SinI GGWCC 3 cut(s) 84, 182, 699
SmiMI CAYNNNNRTG 1 cut(s) 262
SmlI CTYRAG 2 cut(s) 103, 909
SmoI CTYRAG 2 cut(s) 103, 909
SphI GCATGC 1 cut(s) 611
Sse9I AATT 9 cut(s) 188, 200, 250, 278, 450, 488, 779, 897, 957
SsiI CCGC 2 cut(s) 165, 473
SspMI CTAG 1 cut(s) 842
SstI GAGCTC 1 cut(s) 172
StyD4I CCNGG 1 cut(s) 993
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 3 cut(s) 679, 706, 971
TaqI TCGA 3 cut(s) 39, 90, 345
TasI AATT 9 cut(s) 188, 200, 250, 278, 450, 488, 779, 897, 957
TatI WGTACW 2 cut(s) 405, 725
Tru1I TTAA 4 cut(s) 141, 791, 939, 966
Tru9I TTAA 4 cut(s) 141, 791, 939, 966
TscAI CASTG 2 cut(s) 39, 471
TseFI GTSAC 2 cut(s) 577, 989
TseI GCWGC 2 cut(s) 194, 416
Tsp45I GTSAC 2 cut(s) 577, 989
TspDTI ATGAA 3 cut(s) 30, 308, 837
TspRI CASTG 2 cut(s) 39, 471
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 3 cut(s) 84, 182, 699
XapI RAATTY 2 cut(s) 488, 897
XceI RCATGY 3 cut(s) 26, 165, 611
XspI CTAG 1 cut(s) 842
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.