Rh1DG169400

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000160
Physical Location & Seq
Forward (+)
34865728 .. 34872949
7222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG169400.1

Sequence Viewer

Length: 273 bp
ATGGGGCTCCCAGTCCTCAGGCATATTAGCTTCAGAGAATCCCACCGGGTTTTTCTCTGGTGTTACATTTCCTTGGATGAGACTTACTGCCTTTACTCGCTTTATGTTGTGTTCTTTCTCCCTCATGATGGCTCCCAAGTGTTCTACTTCTCCATATATGTAGTTCAGGATGAAGATTCTTCAATTGGGATTGCCAAGCAACAGGACACTCTAGATGAGCAAGATGCAGGTTATATCGGTGAACTGCTCAAGTCTGTGCAGATAGTTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.46

Weight (kDa)

4.53

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 1 cut(s) 183
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw26I GTCTC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 17
BanII GRGCYC 1 cut(s) 9
BccI CCATC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 8, 133
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 1 cut(s) 214
BmuI ACTGGG 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 11
Bse21I CCTNAGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 82, 175
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 11
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 8, 133
BspMI ACCTGC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 2 cut(s) 82, 175
BstMAI GTCTC 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 17
BtsCI GGATG 2 cut(s) 82, 175
BveI ACCTGC 1 cut(s) 218
CciI TCATGA 1 cut(s) 124
CviAII CATG 1 cut(s) 125
CviJI RGCY 3 cut(s) 7, 30, 132
CviKI_1 RGCY 3 cut(s) 7, 30, 132
DdeI CTNAG 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 16
Eco81I CCTNAGG 1 cut(s) 17
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 1 cut(s) 128
FaiI YATR 9 cut(s) 24, 105, 126, 155, 157, 159, 234, 269, 271
FatI CATG 1 cut(s) 124
FokI GGATG 2 cut(s) 89, 182
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 1 cut(s) 212
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 128
HinfI GANTC 2 cut(s) 38, 176
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 3 cut(s) 125, 167, 212
Hpy8I GTNNAC 1 cut(s) 242
HpyCH4V TGCA 2 cut(s) 227, 259
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 1 cut(s) 128
LmnI GCTCC 2 cut(s) 12, 137
LpnPI CCDG 7 cut(s) 4, 24, 43, 59, 152, 188, 213
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 62
MboII GAAGA 2 cut(s) 171, 185
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 183
MnlI CCTC 2 cut(s) 26, 132
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 183
NciI CCSGG 1 cut(s) 47
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 2 cut(s) 8, 133
PagI TCATGA 1 cut(s) 124
PfeI GAWTC 2 cut(s) 38, 176
PspN4I GGNNCC 2 cut(s) 8, 133
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 9
SetI ASST 2 cut(s) 32, 232
SfaNI GCATC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 183
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 45
StyI CCWWGG 1 cut(s) 72
TasI AATT 1 cut(s) 183
TfiI GAWTC 2 cut(s) 38, 176
TspDTI ATGAA 1 cut(s) 186
XbaI TCTAGA 1 cut(s) 211
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.