Rroxscaffold_7G00171410

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000160
Physical Location & Seq
Forward (+)
11705159 .. 11709515
4357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171410.1

Sequence Viewer

Length: 267 bp
ATGGCAAGGTCCAAAGCTCGTGCCTACGATAAGCGGACACGCGGCCGTAGTTACAAAGAGGGTGAACTAGTTTGGAAGGCGATTTTTCCATTGGGCGAGAAGTTGACCGGCCGCGGTAAGTGGACTCCGCGTTGGGAAGGACCCTTTGACGTACTGATCCCTCGAGCGAGGAGGACACGGGCAGCAGCAAGATTAGCTGCGAGACTCACCGTTGAGCGAGCAATCACCGGGAAGTTTGGAAAAAGCACGGGTTTTGCTAAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

88

Amino Acids

9.95

Weight (kDa)

11.64

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 42, 114, 130
AciI CCGC 5 cut(s) 34, 42, 112, 114, 128
AclWI GGATC 1 cut(s) 151
AcoI YGGCCR 2 cut(s) 43, 109
AfaI GTAC 1 cut(s) 153
AhlI ACTAGT 1 cut(s) 67
AluBI AGCT 2 cut(s) 17, 197
AluI AGCT 2 cut(s) 17, 197
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 162
AoxI GGCC 2 cut(s) 43, 109
ApeKI GCWGC 3 cut(s) 182, 185, 197
AspS9I GGNCC 2 cut(s) 9, 140
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 3 cut(s) 74, 199, 217
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 2 cut(s) 9, 140
BauI CACGAG 1 cut(s) 18
BbvI GCAGC 3 cut(s) 184, 194, 197
BceAI ACGGC 1 cut(s) 30
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 196
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 1 cut(s) 68
BisI GCNGC 5 cut(s) 43, 112, 183, 186, 198
BlsI GCNGC 5 cut(s) 44, 113, 184, 187, 199
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 9, 140
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 2 cut(s) 9, 140
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 112
Bse118I RCCGGY 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 184
BseX3I CGGCCG 2 cut(s) 43, 109
BseXI GCAGC 3 cut(s) 184, 194, 197
Bsh1236I CGCG 3 cut(s) 42, 114, 130
Bsh1285I CGRYCG 2 cut(s) 46, 112
BshFI GGCC 2 cut(s) 45, 111
BsiEI CGRYCG 2 cut(s) 46, 112
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 108, 228
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 2 cut(s) 45, 111
BsoBI CYCGRG 1 cut(s) 162
Bsp143I GATC 1 cut(s) 156
BspACI CCGC 5 cut(s) 34, 42, 112, 114, 128
BspANI GGCC 2 cut(s) 45, 111
BspFNI CGCG 3 cut(s) 42, 114, 130
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 112
BstFNI CGCG 3 cut(s) 42, 114, 130
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 156
BstMCI CGRYCG 2 cut(s) 46, 112
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 3 cut(s) 42, 114, 130
BstV1I GCAGC 3 cut(s) 184, 194, 197
BstZI CGGCCG 2 cut(s) 43, 109
BsuRI GGCC 2 cut(s) 45, 111
BtgI CCRYGG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 9, 140
Cfr42I CCGCGG 1 cut(s) 115
Csp6I GTAC 1 cut(s) 152
CviJI RGCY 4 cut(s) 17, 45, 111, 197
CviKI_1 RGCY 4 cut(s) 17, 45, 111, 197
CviQI GTAC 1 cut(s) 152
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
EaeI YGGCCR 2 cut(s) 43, 109
EagI CGGCCG 2 cut(s) 43, 109
EclXI CGGCCG 2 cut(s) 43, 109
Eco47I GGWCC 2 cut(s) 9, 140
Eco52I CGGCCG 2 cut(s) 43, 109
Eco88I CYCGRG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 140
Fnu4HI GCNGC 5 cut(s) 43, 112, 183, 186, 198
Fsp4HI GCNGC 5 cut(s) 43, 112, 183, 186, 198
FspBI CTAG 1 cut(s) 68
GluI GCNGC 5 cut(s) 43, 112, 183, 186, 198
HaeIII GGCC 2 cut(s) 45, 111
HapII CCGG 2 cut(s) 108, 228
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 2 cut(s) 124, 204
HpaII CCGG 2 cut(s) 108, 228
HphI GGTGA 3 cut(s) 74, 199, 217
Hpy166II GTNNAC 3 cut(s) 65, 105, 123
Hpy8I GTNNAC 3 cut(s) 65, 105, 123
HpyAV CCTTC 2 cut(s) 70, 131
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 150
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 2 cut(s) 121, 241
Lsp1109I GCAGC 3 cut(s) 184, 194, 197
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 50
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MlyI GAGTC 2 cut(s) 118, 198
MnlI CCTC 4 cut(s) 52, 162, 165, 171
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 2 cut(s) 108, 228
MspR9I CCNGG 1 cut(s) 229
MvnI CGCG 3 cut(s) 42, 114, 130
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 229
NdeII GATC 1 cut(s) 156
NlaIV GGNNCC 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 162
PkrI GCNGC 5 cut(s) 44, 113, 184, 187, 199
PleI GAGTC 2 cut(s) 118, 198
PpsI GAGTC 2 cut(s) 118, 198
PpuMI RGGWCCY 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 2 cut(s) 9, 140
PspPPI RGGWCCY 1 cut(s) 140
PspXI VCTCGAGB 1 cut(s) 162
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacII CCGCGG 1 cut(s) 115
SatI GCNGC 5 cut(s) 43, 112, 183, 186, 198
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 2 cut(s) 9, 140
SchI GAGTC 2 cut(s) 118, 198
ScrFI CCNGG 1 cut(s) 229
SetI ASST 4 cut(s) 11, 19, 153, 199
Sfr274I CTCGAG 1 cut(s) 162
Sfr303I CCGCGG 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 115
SinI GGWCC 2 cut(s) 9, 140
SlaI CTCGAG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 67
SsiI CCGC 5 cut(s) 34, 42, 112, 114, 128
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 163
TauI GCSGC 2 cut(s) 45, 114
TseI GCWGC 3 cut(s) 182, 185, 197
VpaK11BI GGWCC 2 cut(s) 9, 140
XhoI CTCGAG 1 cut(s) 162
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.