Uncharacterized protein K02A2.6-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 182 - 344 | 2.6e-30 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 409 - 503 | 1.4e-20 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 438 - 538 | 5.3e-16 | RNase H-like domain found in reverse transcriptase |
| RVT_3 | PF13456 | 606 - 724 | 6.3e-20 | Reverse transcriptase-like |
| Integrase_H2C2 | PF17921 | 821 - 874 | 2.1e-07 | Integrase zinc binding domain |
| rve | PF00665 | 895 - 990 | 4.2e-08 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 500 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 890, 893, 2279 |
| AatII | GACGTC | 2 cut(s) | 2115, 2548 |
| Acc16I | TGCGCA | 1 cut(s) | 2414 |
| Acc36I | ACCTGC | 1 cut(s) | 2841 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 457 |
| AccI | GTMKAC | 2 cut(s) | 2115, 2451 |
| AccIII | TCCGGA | 2 cut(s) | 136, 546 |
| AclWI | GGATC | 8 cut(s) | 128, 924, 936, 2255, 2311, 2324, 2512, 3560 |
| AcoI | YGGCCR | 1 cut(s) | 3270 |
| AcuI | CTGAAG | 6 cut(s) | 39, 741, 821, 2816, 2886, 3551 |
| AcvI | CACGTG | 1 cut(s) | 2135 |
| AcyI | GRCGYC | 6 cut(s) | 1341, 1980, 2112, 2545, 3119, 3419 |
| AfeI | AGCGCT | 2 cut(s) | 2356, 3266 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 457, 1304, 1305, 1639, 2684, 2914, 3457, 3518, 3596 |
| AflII | CTTAAG | 1 cut(s) | 1825 |
| AgeI | ACCGGT | 1 cut(s) | 3401 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1961, 3336 |
| AhlI | ACTAGT | 1 cut(s) | 2051 |
| AjnI | CCWGG | 4 cut(s) | 228, 754, 1802, 2672 |
| Alw21I | GWGCWC | 2 cut(s) | 2490, 3246 |
| Alw26I | GTCTC | 7 cut(s) | 440, 582, 906, 1223, 1424, 2464, 3065 |
| Alw44I | GTGCAC | 1 cut(s) | 2486 |
| AlwI | GGATC | 8 cut(s) | 128, 924, 936, 2255, 2311, 2324, 2512, 3560 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 457, 3578 |
| Ama87I | CYCGRG | 1 cut(s) | 1055 |
| Aor13HI | TCCGGA | 2 cut(s) | 136, 546 |
| Aor51HI | AGCGCT | 2 cut(s) | 2356, 3266 |
| ApaI | GGGCCC | 1 cut(s) | 3438 |
| ApaLI | GTGCAC | 1 cut(s) | 2486 |
| ApeKI | GCWGC | 7 cut(s) | 750, 1334, 1353, 2059, 2150, 2891, 3262 |
| AseI | ATTAAT | 2 cut(s) | 1080, 3168 |
| AsiGI | ACCGGT | 1 cut(s) | 3401 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2390, 2930 |
| AspA2I | CCTAGG | 1 cut(s) | 274 |
| AsuC2I | CCSGG | 6 cut(s) | 357, 980, 1561, 1760, 1985, 2885 |
| AsuII | TTCGAA | 1 cut(s) | 774 |
| AsuNHI | GCTAGC | 1 cut(s) | 2161 |
| AvaI | CYCGRG | 1 cut(s) | 1055 |
| AvaII | GGWCC | 6 cut(s) | 1051, 1309, 2098, 2519, 2624, 2881 |
| AvrII | CCTAGG | 1 cut(s) | 274 |
| AxyI | CCTNAGG | 1 cut(s) | 3385 |
| BaeGI | GKGCMC | 2 cut(s) | 2490, 3438 |
| BamHI | GGATCC | 1 cut(s) | 2316 |
| BanII | GRGCYC | 2 cut(s) | 2298, 3438 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 144, 176 |
| BbrPI | CACGTG | 1 cut(s) | 2135 |
| BbsI | GAAGAC | 1 cut(s) | 732 |
| Bbv12I | GWGCWC | 2 cut(s) | 2490, 3246 |
| BbvI | GCAGC | 7 cut(s) | 737, 1346, 1365, 2046, 2137, 2903, 3274 |
| BccI | CCATC | 6 cut(s) | 269, 1814, 2423, 2669, 3286, 3510 |
| BceAI | ACGGC | 2 cut(s) | 775, 1395 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 80, 114, 410, 444 |
| BciT130I | CCWGG | 4 cut(s) | 230, 756, 1804, 2674 |
| BciVI | GTATCC | 2 cut(s) | 268, 2870 |
| BcnI | CCSGG | 6 cut(s) | 357, 980, 1561, 1760, 1985, 2885 |
| BcoDI | GTCTC | 7 cut(s) | 440, 582, 906, 1223, 1424, 2464, 3065 |
| BcuI | ACTAGT | 1 cut(s) | 2051 |
| BfaI | CTAG | 6 cut(s) | 275, 314, 1670, 1688, 2052, 2162 |
| BfmI | CTRYAG | 3 cut(s) | 1164, 2175, 2732 |
| BfoI | RGCGCY | 5 cut(s) | 182, 2358, 2696, 3268, 3471 |
| BfrI | CTTAAG | 1 cut(s) | 1825 |
| BfuAI | ACCTGC | 1 cut(s) | 2841 |
| BfuI | GTATCC | 2 cut(s) | 268, 2870 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1271, 1584 |
| BlnI | CCTAGG | 1 cut(s) | 274 |
| BmcAI | AGTACT | 1 cut(s) | 2956 |
| Bme18I | GGWCC | 6 cut(s) | 1051, 1309, 2098, 2519, 2624, 2881 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1961, 3336 |
| BmeT110I | CYCGRG | 1 cut(s) | 1055 |
| BmsI | GCATC | 8 cut(s) | 640, 1094, 1530, 1684, 1764, 2466, 2517, 3018 |
| BmtI | GCTAGC | 1 cut(s) | 2165 |
| BpiI | GAAGAC | 1 cut(s) | 732 |
| BpmI | CTGGAG | 6 cut(s) | 1604, 2054, 2250, 2312, 2335, 3555 |
| Bpu14I | TTCGAA | 1 cut(s) | 774 |
| BpuEI | CTTGAG | 3 cut(s) | 953, 1350, 1591 |
| BpuMI | CCSGG | 6 cut(s) | 357, 980, 1561, 1760, 1985, 2885 |
| BsaAI | YACGTR | 1 cut(s) | 2135 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3501 |
| BsaHI | GRCGYC | 6 cut(s) | 1341, 1980, 2112, 2545, 3119, 3419 |
| BsaI | GGTCTC | 2 cut(s) | 440, 1223 |
| BsaWI | WCCGGW | 4 cut(s) | 136, 546, 2807, 3401 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2895, 2925 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 457, 1304, 1305, 1639, 2684, 2914, 3457, 3518, 3596 |
| Bse118I | RCCGGY | 4 cut(s) | 412, 809, 1035, 3401 |
| Bse1I | ACTGG | 5 cut(s) | 629, 1283, 1621, 2295, 2824 |
| Bse21I | CCTNAGG | 1 cut(s) | 3385 |
| Bse3DI | GCAATG | 3 cut(s) | 96, 2085, 3237 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3501 |
| BseAI | TCCGGA | 2 cut(s) | 136, 546 |
| BseBI | CCWGG | 4 cut(s) | 230, 756, 1804, 2674 |
| BseGI | GGATG | 7 cut(s) | 148, 655, 1678, 1755, 2064, 2538, 2715 |
| BseJI | GATNNNNATC | 1 cut(s) | 3501 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 457, 1304, 1305, 1639, 2684, 2914, 3457, 3518, 3596 |
| BseMI | GCAATG | 3 cut(s) | 96, 2085, 3237 |
| BseNI | ACTGG | 5 cut(s) | 629, 1283, 1621, 2295, 2824 |
| BseRI | GAGGAG | 1 cut(s) | 2930 |
| BseSI | GKGCMC | 2 cut(s) | 2490, 3438 |
| BseXI | GCAGC | 7 cut(s) | 737, 1346, 1365, 2046, 2137, 2903, 3274 |
| BseYI | CCCAGC | 4 cut(s) | 2564, 2688, 3426, 3593 |
| Bsh1285I | CGRYCG | 4 cut(s) | 94, 2458, 3406, 3523 |
| BshTI | ACCGGT | 1 cut(s) | 3401 |
| BsiEI | CGRYCG | 4 cut(s) | 94, 2458, 3406, 3523 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2490, 3246 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1055 |
| BsiWI | CGTACG | 1 cut(s) | 1412 |
| BslFI | GGGAC | 5 cut(s) | 1025, 1037, 1295, 1543, 2000 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 457, 1304, 1305, 1639, 2684, 2914, 3457, 3518, 3596 |
| BsmAI | GTCTC | 7 cut(s) | 440, 582, 906, 1223, 1424, 2464, 3065 |
| BsmFI | GGGAC | 5 cut(s) | 1025, 1037, 1295, 1543, 2000 |
| BsmI | GAATGC | 2 cut(s) | 2211, 2588 |
| Bso31I | GGTCTC | 2 cut(s) | 440, 1223 |
| BsoBI | CYCGRG | 1 cut(s) | 1055 |
| Bsp119I | TTCGAA | 1 cut(s) | 774 |
| Bsp120I | GGGCCC | 1 cut(s) | 3434 |
| Bsp1286I | GDGCHC | 4 cut(s) | 2298, 2490, 3246, 3438 |
| Bsp13I | TCCGGA | 2 cut(s) | 136, 546 |
| Bsp1407I | TGTACA | 1 cut(s) | 1323 |
| Bsp19I | CCATGG | 2 cut(s) | 1446, 2277 |
| Bsp68I | TCGCGA | 1 cut(s) | 2460 |
| BspEI | TCCGGA | 2 cut(s) | 136, 546 |
| BspMAI | CTGCAG | 1 cut(s) | 1168 |
| BspMI | ACCTGC | 1 cut(s) | 2841 |
| BspOI | GCTAGC | 1 cut(s) | 2165 |
| BspPI | GGATC | 8 cut(s) | 128, 924, 936, 2255, 2311, 2324, 2512, 3560 |
| BspT104I | TTCGAA | 1 cut(s) | 774 |
| BspTI | CTTAAG | 1 cut(s) | 1825 |
| BspTNI | GGTCTC | 2 cut(s) | 440, 1223 |
| BsrDI | GCAATG | 3 cut(s) | 96, 2085, 3237 |
| BsrFI | RCCGGY | 4 cut(s) | 412, 809, 1035, 3401 |
| BsrGI | TGTACA | 1 cut(s) | 1323 |
| BsrI | ACTGG | 5 cut(s) | 629, 1283, 1621, 2295, 2824 |
| BssAI | RCCGGY | 4 cut(s) | 412, 809, 1035, 3401 |
| BssNI | GRCGYC | 6 cut(s) | 1341, 1980, 2112, 2545, 3119, 3419 |
| BssT1I | CCWWGG | 4 cut(s) | 198, 274, 1446, 2277 |
| Bst2UI | CCWGG | 4 cut(s) | 230, 756, 1804, 2674 |
| Bst6I | CTCTTC | 3 cut(s) | 15, 141, 462 |
| BstACI | GRCGYC | 6 cut(s) | 1341, 1980, 2112, 2545, 3119, 3419 |
| BstAFI | CTTAAG | 1 cut(s) | 1825 |
| BstAUI | TGTACA | 1 cut(s) | 1323 |
| BstBAI | YACGTR | 1 cut(s) | 2135 |
| BstBI | TTCGAA | 1 cut(s) | 774 |
| BstDSI | CCRYGG | 4 cut(s) | 1094, 1446, 2277, 2620 |
| BstEII | GGTNACC | 2 cut(s) | 3356, 3397 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2682 |
| BstF5I | GGATG | 7 cut(s) | 148, 655, 1678, 1755, 2064, 2538, 2715 |
| BstH2I | RGCGCY | 5 cut(s) | 182, 2358, 2696, 3268, 3471 |
| BstMAI | GTCTC | 7 cut(s) | 440, 582, 906, 1223, 1424, 2464, 3065 |
| BstMCI | CGRYCG | 4 cut(s) | 94, 2458, 3406, 3523 |
| BstNI | CCWGG | 4 cut(s) | 230, 756, 1804, 2674 |
| BstNSI | RCATGY | 3 cut(s) | 355, 955, 1394 |
| BstPI | GGTNACC | 2 cut(s) | 3356, 3397 |
| BstSFI | CTRYAG | 3 cut(s) | 1164, 2175, 2732 |
| BstSLI | GKGCMC | 2 cut(s) | 2490, 3438 |
| BstV1I | GCAGC | 7 cut(s) | 737, 1346, 1365, 2046, 2137, 2903, 3274 |
| BstV2I | GAAGAC | 1 cut(s) | 732 |
| BstX2I | RGATCY | 3 cut(s) | 928, 2316, 2504 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3552 |
| BstYI | RGATCY | 3 cut(s) | 928, 2316, 2504 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3385 |
| BsuI | GTATCC | 2 cut(s) | 268, 2870 |
| BtgI | CCRYGG | 4 cut(s) | 1094, 1446, 2277, 2620 |
| BtgZI | GCGATG | 4 cut(s) | 907, 1510, 3228, 3488 |
| BtsCI | GGATG | 7 cut(s) | 148, 655, 1678, 1755, 2064, 2538, 2715 |
| BtsIMutI | CAGTG | 5 cut(s) | 15, 271, 527, 2757, 3056 |
| BtuMI | TCGCGA | 1 cut(s) | 2460 |
| BveI | ACCTGC | 1 cut(s) | 2841 |
| CaiI | CAGNNNCTG | 2 cut(s) | 457, 3578 |
| Cfr10I | RCCGGY | 4 cut(s) | 412, 809, 1035, 3401 |
| CpoI | CGGWCCG | 1 cut(s) | 2881 |
| CseI | GACGC | 8 cut(s) | 1349, 1844, 1969, 2216, 3127, 3155, 3340, 3427 |
| CspAI | ACCGGT | 1 cut(s) | 3401 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1269, 1304, 3215, 3250 |
| CspI | CGGWCCG | 1 cut(s) | 2881 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 890, 893, 2279 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1961, 3336 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 890, 893, 2279 |
| EaeI | YGGCCR | 1 cut(s) | 3270 |
| Eam1104I | CTCTTC | 3 cut(s) | 15, 141, 462 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1961, 3336 |
| EarI | CTCTTC | 3 cut(s) | 15, 141, 462 |
| EciI | GGCGGA | 2 cut(s) | 2329, 3002 |
| Eco130I | CCWWGG | 4 cut(s) | 198, 274, 1446, 2277 |
| Eco147I | AGGCCT | 2 cut(s) | 1265, 2804 |
| Eco24I | GRGCYC | 2 cut(s) | 2298, 3438 |
| Eco31I | GGTCTC | 2 cut(s) | 440, 1223 |
| Eco32I | GATATC | 1 cut(s) | 3499 |
| Eco47I | GGWCC | 6 cut(s) | 1051, 1309, 2098, 2519, 2624, 2881 |
| Eco47III | AGCGCT | 2 cut(s) | 2356, 3266 |
| Eco57I | CTGAAG | 6 cut(s) | 39, 741, 821, 2816, 2886, 3551 |
| Eco72I | CACGTG | 1 cut(s) | 2135 |
| Eco81I | CCTNAGG | 1 cut(s) | 3385 |
| Eco88I | CYCGRG | 1 cut(s) | 1055 |
| Eco91I | GGTNACC | 2 cut(s) | 3356, 3397 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2682 |
| EcoO109I | RGGNCCY | 6 cut(s) | 278, 1051, 1309, 2906, 3434, 3435 |
| EcoO65I | GGTNACC | 2 cut(s) | 3356, 3397 |
| EcoRII | CCWGG | 4 cut(s) | 228, 754, 1802, 2672 |
| EcoRV | GATATC | 1 cut(s) | 3499 |
| EcoT14I | CCWWGG | 4 cut(s) | 198, 274, 1446, 2277 |
| EcoT22I | ATGCAT | 3 cut(s) | 486, 1087, 1757 |
| EcoT38I | GRGCYC | 2 cut(s) | 2298, 3438 |
| ErhI | CCWWGG | 4 cut(s) | 198, 274, 1446, 2277 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 314, 346, 1445, 1477, 3345, 3377 |
| FaqI | GGGAC | 5 cut(s) | 1025, 1037, 1295, 1543, 2000 |
| FauI | CCCGC | 4 cut(s) | 757, 1843, 3320, 3327 |
| FblI | GTMKAC | 2 cut(s) | 2115, 2451 |
| FokI | GGATG | 7 cut(s) | 155, 662, 1665, 1742, 2051, 2525, 2722 |
| FriOI | GRGCYC | 2 cut(s) | 2298, 3438 |
| FspBI | CTAG | 6 cut(s) | 275, 314, 1670, 1688, 2052, 2162 |
| FspI | TGCGCA | 1 cut(s) | 2414 |
| GsaI | CCCAGC | 4 cut(s) | 2568, 2692, 3430, 3597 |
| GsuI | CTGGAG | 6 cut(s) | 1604, 2054, 2250, 2312, 2335, 3555 |
| HaeII | RGCGCY | 5 cut(s) | 182, 2358, 2696, 3268, 3471 |
| HgaI | GACGC | 8 cut(s) | 1349, 1844, 1969, 2216, 3127, 3155, 3340, 3427 |
| Hin1I | GRCGYC | 6 cut(s) | 1341, 1980, 2112, 2545, 3119, 3419 |
| HincII | GTYRAC | 2 cut(s) | 226, 2116 |
| HindII | GTYRAC | 2 cut(s) | 226, 2116 |
| Hpy166II | GTNNAC | 8 cut(s) | 226, 619, 1033, 1440, 2116, 2138, 2452, 2488 |
| Hpy8I | GTNNAC | 8 cut(s) | 226, 619, 1033, 1440, 2116, 2138, 2452, 2488 |
| HpyAV | CCTTC | 9 cut(s) | 46, 214, 688, 1630, 2250, 2569, 2791, 3347, 3364 |
| HpyCH4IV | ACGT | 9 cut(s) | 433, 615, 818, 888, 1989, 2112, 2134, 2545, 2637 |
| HpySE526I | ACGT | 9 cut(s) | 433, 615, 818, 888, 1989, 2112, 2134, 2545, 2637 |
| Hsp92I | GRCGYC | 6 cut(s) | 1341, 1980, 2112, 2545, 3119, 3419 |
| KflI | GGGWCCC | 1 cut(s) | 1309 |
| Kpn2I | TCCGGA | 2 cut(s) | 136, 546 |
| LmnI | GCTCC | 8 cut(s) | 175, 424, 1623, 2293, 2917, 3241, 3460, 3592 |
| Lsp1109I | GCAGC | 7 cut(s) | 737, 1346, 1365, 2046, 2137, 2903, 3274 |
| LweI | GCATC | 8 cut(s) | 640, 1094, 1530, 1684, 1764, 2466, 2517, 3018 |
| MaeI | CTAG | 6 cut(s) | 275, 314, 1670, 1688, 2052, 2162 |
| MaeII | ACGT | 9 cut(s) | 433, 615, 818, 888, 1989, 2112, 2134, 2545, 2637 |
| MaeIII | GTNAC | 4 cut(s) | 363, 3101, 3356, 3397 |
| MflI | RGATCY | 3 cut(s) | 928, 2316, 2504 |
| MhlI | GDGCHC | 4 cut(s) | 2298, 2490, 3246, 3438 |
| MlyI | GAGTC | 5 cut(s) | 579, 1729, 1950, 2342, 3195 |
| MmeI | TCCRAC | 4 cut(s) | 1692, 1950, 2566, 2859 |
| Mph1103I | ATGCAT | 3 cut(s) | 486, 1087, 1757 |
| MroI | TCCGGA | 2 cut(s) | 136, 546 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2390, 2930 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1445, 1912, 2651 |
| MspA1I | CMGCKG | 1 cut(s) | 750 |
| MspCI | CTTAAG | 1 cut(s) | 1825 |
| MteI | GCGCNGCGC | 1 cut(s) | 3466 |
| Mva1269I | GAATGC | 2 cut(s) | 2211, 2588 |
| MvaI | CCWGG | 4 cut(s) | 230, 756, 1804, 2674 |
| NciI | CCSGG | 6 cut(s) | 357, 980, 1561, 1760, 1985, 2885 |
| NcoI | CCATGG | 2 cut(s) | 1446, 2277 |
| NheI | GCTAGC | 1 cut(s) | 2161 |
| NmuCI | GTSAC | 2 cut(s) | 363, 3356 |
| NruI | TCGCGA | 1 cut(s) | 2460 |
| NsbI | TGCGCA | 1 cut(s) | 2414 |
| NsiI | ATGCAT | 3 cut(s) | 486, 1087, 1757 |
| NspI | RCATGY | 3 cut(s) | 355, 955, 1394 |
| NspV | TTCGAA | 1 cut(s) | 774 |
| PaeI | GCATGC | 2 cut(s) | 955, 1394 |
| PasI | CCCWGGG | 1 cut(s) | 1803 |
| PceI | AGGCCT | 2 cut(s) | 1265, 2804 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 891, 2240 |
| PctI | GAATGC | 2 cut(s) | 2211, 2588 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2390, 2930 |
| PfeI | GAWTC | 9 cut(s) | 454, 595, 709, 835, 1996, 2006, 2368, 2713, 3040 |
| Pfl23II | CGTACG | 1 cut(s) | 1412 |
| PflFI | GACNNNGTC | 3 cut(s) | 890, 1382, 3149 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 457 |
| PfoI | TCCNGGA | 2 cut(s) | 1758, 1983 |
| PinAI | ACCGGT | 1 cut(s) | 3401 |
| Ple19I | CGATCG | 1 cut(s) | 94 |
| PleI | GAGTC | 5 cut(s) | 578, 1729, 1950, 2342, 3194 |
| PmaCI | CACGTG | 1 cut(s) | 2135 |
| PmlI | CACGTG | 1 cut(s) | 2135 |
| PpsI | GAGTC | 5 cut(s) | 578, 1729, 1950, 2342, 3194 |
| Ppu21I | YACGTR | 1 cut(s) | 2135 |
| PpuMI | RGGWCCY | 2 cut(s) | 1051, 1309 |
| PshBI | ATTAAT | 2 cut(s) | 1080, 3168 |
| PsiI | TTATAA | 1 cut(s) | 500 |
| Psp5II | RGGWCCY | 2 cut(s) | 1051, 1309 |
| Psp6I | CCWGG | 4 cut(s) | 228, 754, 1802, 2672 |
| PspCI | CACGTG | 1 cut(s) | 2135 |
| PspEI | GGTNACC | 2 cut(s) | 3356, 3397 |
| PspFI | CCCAGC | 4 cut(s) | 2564, 2688, 3426, 3593 |
| PspGI | CCWGG | 4 cut(s) | 228, 754, 1802, 2672 |
| PspLI | CGTACG | 1 cut(s) | 1412 |
| PspOMI | GGGCCC | 1 cut(s) | 3434 |
| PspPPI | RGGWCCY | 2 cut(s) | 1051, 1309 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1683, 1715 |
| PstI | CTGCAG | 1 cut(s) | 1168 |
| PstNI | CAGNNNCTG | 2 cut(s) | 457, 3578 |
| PsuI | RGATCY | 3 cut(s) | 928, 2316, 2504 |
| PsyI | GACNNNGTC | 3 cut(s) | 890, 1382, 3149 |
| PvuI | CGATCG | 1 cut(s) | 94 |
| RruI | TCGCGA | 1 cut(s) | 2460 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1445, 1912, 2651 |
| Rsr2I | CGGWCCG | 1 cut(s) | 2881 |
| RsrII | CGGWCCG | 1 cut(s) | 2881 |
| SalI | GTCGAC | 1 cut(s) | 2114 |
| ScaI | AGTACT | 1 cut(s) | 2956 |
| SchI | GAGTC | 5 cut(s) | 579, 1729, 1950, 2342, 3195 |
| SduI | GDGCHC | 4 cut(s) | 2298, 2490, 3246, 3438 |
| SfaNI | GCATC | 8 cut(s) | 640, 1094, 1530, 1684, 1764, 2466, 2517, 3018 |
| SfcI | CTRYAG | 3 cut(s) | 1164, 2175, 2732 |
| SfuI | TTCGAA | 1 cut(s) | 774 |
| SgrAI | CRCCGGYG | 2 cut(s) | 809, 1035 |
| SinI | GGWCC | 6 cut(s) | 1051, 1309, 2098, 2519, 2624, 2881 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1445, 1912, 2651 |
| SmlI | CTYRAG | 4 cut(s) | 968, 1365, 1570, 1825 |
| SmoI | CTYRAG | 4 cut(s) | 968, 1365, 1570, 1825 |
| SpeI | ACTAGT | 1 cut(s) | 2051 |
| SphI | GCATGC | 2 cut(s) | 955, 1394 |
| SseBI | AGGCCT | 2 cut(s) | 1265, 2804 |
| SspI | AATATT | 1 cut(s) | 2842 |
| SspMI | CTAG | 6 cut(s) | 275, 314, 1670, 1688, 2052, 2162 |
| StuI | AGGCCT | 2 cut(s) | 1265, 2804 |
| StyI | CCWWGG | 4 cut(s) | 198, 274, 1446, 2277 |
| TaiI | ACGT | 9 cut(s) | 436, 618, 821, 891, 1992, 2115, 2137, 2548, 2640 |
| TatI | WGTACW | 4 cut(s) | 1323, 1916, 2048, 2954 |
| TauI | GCSGC | 6 cut(s) | 179, 1581, 2004, 3275, 3424, 3468 |
| TfiI | GAWTC | 9 cut(s) | 454, 595, 709, 835, 1996, 2006, 2368, 2713, 3040 |
| TscAI | CASTG | 5 cut(s) | 22, 271, 527, 2764, 3056 |
| TseFI | GTSAC | 2 cut(s) | 363, 3356 |
| TseI | GCWGC | 7 cut(s) | 750, 1334, 1353, 2059, 2150, 2891, 3262 |
| Tsp45I | GTSAC | 2 cut(s) | 363, 3356 |
| TspGWI | ACGGA | 5 cut(s) | 1111, 1550, 1847, 2825, 2949 |
| TspRI | CASTG | 5 cut(s) | 22, 271, 527, 2764, 3056 |
| Tth111I | GACNNNGTC | 3 cut(s) | 890, 1382, 3149 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 457 |
| Vha464I | CTTAAG | 1 cut(s) | 1825 |
| VneI | GTGCAC | 1 cut(s) | 2486 |
| VpaK11BI | GGWCC | 6 cut(s) | 1051, 1309, 2098, 2519, 2624, 2881 |
| VspI | ATTAAT | 2 cut(s) | 1080, 3168 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2682 |
| XceI | RCATGY | 3 cut(s) | 355, 955, 1394 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 854, 2092 |
| XmaJI | CCTAGG | 1 cut(s) | 274 |
| XmiI | GTMKAC | 2 cut(s) | 2115, 2451 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2390, 2930 |
| XspI | CTAG | 6 cut(s) | 275, 314, 1670, 1688, 2052, 2162 |
| ZraI | GACGTC | 2 cut(s) | 2113, 2546 |
| ZrmI | AGTACT | 1 cut(s) | 2956 |
| Zsp2I | ATGCAT | 3 cut(s) | 486, 1087, 1757 |