RchiOBHm_Chr2g0102771

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000160
Physical Location & Seq
Forward (+)
14416349 .. 14418210
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47718

Sequence Viewer

Length: 312 bp
ATGGACGCTTACAACCGAATGGAAGCACAGAAAAAAGCTGTGGCCCGTGCATACAACAAACGAGTTAAGTCTAAGTCATTTGCTGAGGAAGATTTAGTTTGGAAAGCCGTTTTGCCTATCGGAACTAAAGATAAACGTTTCAAAAAATGGTCGCCAAGGTGGGAAGGCCTGTTTATCATCGATCAAGTGTTAGGAAAATGTGCATATCAACTGAGAGATCACGATGGAGAGCTGCATGCAATGCCTATCAACGGGAAATTCCTCAAGAAATATTACCCCACTACCTGGGAGATGATGGAGCAAGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.24

Weight (kDa)

9.46

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 285
AclI AACGTT 1 cut(s) 136
AcsI RAATTY 1 cut(s) 257
AfiI CCNNNNNNNGG 2 cut(s) 251, 285
AgsI TTSAA 1 cut(s) 142
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 2 cut(s) 38, 232
AluI AGCT 2 cut(s) 38, 232
AoxI GGCC 2 cut(s) 42, 166
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 43
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 219
BccI CCATC 2 cut(s) 218, 289
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 286
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 43
BmrFI CCNGG 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 248
Bsa29I ATCGAT 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 155, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 285
Bse3DI GCAATG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 286
BseCI ATCGAT 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 155, 285
BseLI CCNNNNNNNGG 2 cut(s) 251, 285
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 75, 203
BseXI GCAGC 1 cut(s) 219
BshFI GGCC 2 cut(s) 44, 168
BshVI ATCGAT 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 251, 285
BsnI GGCC 2 cut(s) 44, 168
Bsp143I GATC 2 cut(s) 181, 217
BspANI GGCC 2 cut(s) 44, 168
BspCNI CTCAG 2 cut(s) 76, 204
BspDI ATCGAT 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 155, 285
BssMI GATC 2 cut(s) 181, 217
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 286
BstAPI GCANNNNNTGC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 72, 84, 212
BstKTI GATC 2 cut(s) 184, 220
BstMBI GATC 2 cut(s) 181, 217
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 219
Bsu15I ATCGAT 1 cut(s) 180
BsuRI GGCC 2 cut(s) 44, 168
BsuTUI ATCGAT 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 180
CseI GACGC 1 cut(s) 14
CviAII CATG 1 cut(s) 236
CviJI RGCY 5 cut(s) 38, 44, 107, 168, 232
CviKI_1 RGCY 5 cut(s) 38, 44, 107, 168, 232
DdeI CTNAG 3 cut(s) 72, 84, 212
DpnI GATC 2 cut(s) 183, 219
DpnII GATC 2 cut(s) 181, 217
Eco130I CCWWGG 1 cut(s) 155
Eco147I AGGCCT 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 239
FaiI YATR 4 cut(s) 52, 205, 237, 310
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 233
HaeIII GGCC 2 cut(s) 44, 168
HgaI GACGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 239
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 221, 265
HpyAV CCTTC 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 50, 203, 235, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 3 cut(s) 72, 84, 212
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 181, 217
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 3 cut(s) 182, 271, 298
Lsp1109I GCAGC 1 cut(s) 219
MaeII ACGT 1 cut(s) 136
MalI GATC 2 cut(s) 183, 219
MboI GATC 2 cut(s) 181, 217
MboII GAAGA 1 cut(s) 101
MluCI AATT 2 cut(s) 257, 305
MnlI CCTC 2 cut(s) 79, 272
MseI TTAA 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 2 cut(s) 181, 217
NlaIII CATG 1 cut(s) 239
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 168
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 1 cut(s) 234
Psp1406I AACGTT 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspPI GGNCC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 2 cut(s) 181, 217
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 286
SetI ASST 5 cut(s) 40, 139, 161, 234, 287
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SphI GCATGC 1 cut(s) 239
Sse9I AATT 2 cut(s) 257, 305
SseBI AGGCCT 1 cut(s) 168
SspI AATATT 1 cut(s) 272
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 155
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 257, 305
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 285
XapI RAATTY 1 cut(s) 257
XceI RCATGY 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.