Uncharacterized protein K02A2.6-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 174 - 334 | 4e-29 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 401 - 496 | 1.9e-20 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 429 - 530 | 4.5e-18 | RNase H-like domain found in reverse transcriptase |
| RVT_3 | PF13456 | 582 - 700 | 4.2e-20 | Reverse transcriptase-like |
| Integrase_H2C2 | PF17921 | 797 - 847 | 1.2e-07 | Integrase zinc binding domain |
| rve | PF00665 | 866 - 963 | 1.2e-15 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 239 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 869, 3248 |
| Acc36I | ACCTGC | 1 cut(s) | 2569 |
| AccB1I | GGYRCC | 1 cut(s) | 209 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3326 |
| AccBSI | CCGCTC | 3 cut(s) | 59, 71, 632 |
| AccII | CGCG | 2 cut(s) | 1310, 3222 |
| AcsI | RAATTY | 8 cut(s) | 89, 120, 293, 645, 1111, 1389, 2305, 2415 |
| AcuI | CTGAAG | 5 cut(s) | 717, 1683, 1821, 2088, 3291 |
| AcvI | CACGTG | 1 cut(s) | 2966 |
| AdeI | CACNNNGTG | 1 cut(s) | 2839 |
| AfaI | GTAC | 9 cut(s) | 481, 708, 1263, 1301, 1376, 2559, 2714, 3297, 3458 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 148, 1101, 1200, 1280, 1360, 2058, 3326, 3437 |
| AflIII | ACRYGT | 1 cut(s) | 2656 |
| AjiI | CACGTC | 2 cut(s) | 638, 865 |
| AjnI | CCWGG | 3 cut(s) | 147, 730, 1644 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 189, 221, 1308, 1340, 1677, 1709 |
| Alw21I | GWGCWC | 4 cut(s) | 739, 937, 1063, 2428 |
| Alw26I | GTCTC | 3 cut(s) | 982, 2780, 2984 |
| Alw44I | GTGCAC | 1 cut(s) | 1059 |
| Ama87I | CYCGRG | 1 cut(s) | 189 |
| ApaLI | GTGCAC | 1 cut(s) | 1059 |
| ApeKI | GCWGC | 3 cut(s) | 427, 2271, 2912 |
| ApoI | RAATTY | 8 cut(s) | 89, 120, 293, 645, 1111, 1389, 2305, 2415 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1797, 1829 |
| AseI | ATTAAT | 3 cut(s) | 1922, 1950, 2952 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 120, 1727, 1967 |
| AspLEI | GCGC | 1 cut(s) | 3224 |
| AspS9I | GGNCC | 9 cut(s) | 54, 140, 789, 1576, 1734, 2218, 2543, 2610, 3353 |
| AsuC2I | CCSGG | 3 cut(s) | 190, 191, 333 |
| AsuHPI | GGTGA | 4 cut(s) | 1643, 1972, 3330, 3425 |
| AsuII | TTCGAA | 2 cut(s) | 2461, 2602 |
| AsuNHI | GCTAGC | 1 cut(s) | 34 |
| AvaI | CYCGRG | 1 cut(s) | 189 |
| AvaII | GGWCC | 3 cut(s) | 1734, 2218, 2543 |
| BaeGI | GKGCMC | 2 cut(s) | 1063, 3004 |
| BalI | TGGCCA | 3 cut(s) | 2843, 3060, 3441 |
| BamHI | GGATCC | 2 cut(s) | 2664, 3372 |
| BanI | GGYRCC | 1 cut(s) | 209 |
| BanII | GRGCYC | 4 cut(s) | 739, 937, 1912, 2428 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 690, 722 |
| BauI | CACGAG | 1 cut(s) | 3231 |
| BbrPI | CACGTG | 1 cut(s) | 2966 |
| BbsI | GAAGAC | 1 cut(s) | 2470 |
| Bbv12I | GWGCWC | 4 cut(s) | 739, 937, 1063, 2428 |
| BbvCI | CCTCAGC | 2 cut(s) | 1185, 2025 |
| BbvI | GCAGC | 3 cut(s) | 439, 2283, 2899 |
| BciT130I | CCWGG | 3 cut(s) | 149, 732, 1646 |
| BciVI | GTATCC | 2 cut(s) | 668, 1723 |
| BcnI | CCSGG | 3 cut(s) | 190, 191, 333 |
| BcoDI | GTCTC | 3 cut(s) | 982, 2780, 2984 |
| BfaI | CTAG | 7 cut(s) | 35, 275, 486, 899, 2669, 2727, 3183 |
| BfuAI | ACCTGC | 1 cut(s) | 2569 |
| BfuI | GTATCC | 2 cut(s) | 668, 1723 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 406 |
| BglII | AGATCT | 1 cut(s) | 3277 |
| BmcAI | AGTACT | 2 cut(s) | 1263, 3297 |
| Bme1390I | CCNGG | 6 cut(s) | 149, 190, 191, 333, 732, 1646 |
| Bme18I | GGWCC | 3 cut(s) | 1734, 2218, 2543 |
| BmeT110I | CYCGRG | 1 cut(s) | 189 |
| BmgBI | CACGTC | 2 cut(s) | 638, 865 |
| BmgT120I | GGNCC | 9 cut(s) | 54, 140, 789, 1576, 1734, 2218, 2543, 2610, 3353 |
| BmiI | GGNNCC | 7 cut(s) | 211, 790, 1191, 2220, 2666, 3354, 3374 |
| BmrFI | CCNGG | 6 cut(s) | 149, 190, 191, 333, 732, 1646 |
| BmrI | ACTGGG | 3 cut(s) | 249, 3071, 3141 |
| BmsI | GCATC | 6 cut(s) | 1018, 1257, 2068, 2385, 3055, 3468 |
| BmtI | GCTAGC | 1 cut(s) | 38 |
| BmuI | ACTGGG | 3 cut(s) | 249, 3071, 3141 |
| BpiI | GAAGAC | 1 cut(s) | 2470 |
| BpmI | CTGGAG | 3 cut(s) | 753, 1800, 2534 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1185, 2008, 2025 |
| Bpu14I | TTCGAA | 2 cut(s) | 2461, 2602 |
| BpuEI | CTTGAG | 1 cut(s) | 3129 |
| BpuMI | CCSGG | 3 cut(s) | 190, 191, 333 |
| BsaAI | YACGTR | 2 cut(s) | 795, 2966 |
| BsaBI | GATNNNNATC | 2 cut(s) | 594, 3174 |
| BsaI | GGTCTC | 1 cut(s) | 982 |
| BsaWI | WCCGGW | 2 cut(s) | 342, 3029 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 565, 595 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 148, 1101, 1200, 1280, 1360, 2058, 3326, 3437 |
| Bse1I | ACTGG | 7 cut(s) | 255, 518, 1259, 2017, 2326, 3077, 3136 |
| Bse3DI | GCAATG | 2 cut(s) | 690, 1128 |
| Bse8I | GATNNNNATC | 2 cut(s) | 594, 3174 |
| BseBI | CCWGG | 3 cut(s) | 149, 732, 1646 |
| BseGI | GGATG | 3 cut(s) | 2386, 2575, 2635 |
| BseJI | GATNNNNATC | 2 cut(s) | 594, 3174 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 148, 1101, 1200, 1280, 1360, 2058, 3326, 3437 |
| BseMI | GCAATG | 2 cut(s) | 690, 1128 |
| BseNI | ACTGG | 7 cut(s) | 255, 518, 1259, 2017, 2326, 3077, 3136 |
| BseRI | GAGGAG | 1 cut(s) | 1421 |
| BseSI | GKGCMC | 2 cut(s) | 1063, 3004 |
| BseX3I | CGGCCG | 2 cut(s) | 1311, 2796 |
| BseXI | GCAGC | 3 cut(s) | 439, 2283, 2899 |
| BseYI | CCCAGC | 3 cut(s) | 142, 1772, 2607 |
| BsgI | GTGCAG | 2 cut(s) | 446, 2364 |
| Bsh1236I | CGCG | 2 cut(s) | 1310, 3222 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1314, 2799, 2803 |
| BshNI | GGYRCC | 1 cut(s) | 209 |
| BsiEI | CGRYCG | 3 cut(s) | 1314, 2799, 2803 |
| BsiHKAI | GWGCWC | 4 cut(s) | 739, 937, 1063, 2428 |
| BsiHKCI | CYCGRG | 1 cut(s) | 189 |
| BsiSI | CCGG | 5 cut(s) | 190, 333, 343, 672, 3030 |
| BslFI | GGGAC | 4 cut(s) | 757, 1524, 1711, 1780 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 148, 1101, 1200, 1280, 1360, 2058, 3326, 3437 |
| BsmAI | GTCTC | 3 cut(s) | 982, 2780, 2984 |
| BsmBI | CGTCTC | 1 cut(s) | 2780 |
| BsmFI | GGGAC | 4 cut(s) | 757, 1524, 1711, 1780 |
| Bso31I | GGTCTC | 1 cut(s) | 982 |
| BsoBI | CYCGRG | 1 cut(s) | 189 |
| Bsp119I | TTCGAA | 2 cut(s) | 2461, 2602 |
| Bsp1286I | GDGCHC | 6 cut(s) | 739, 937, 1063, 1912, 2428, 3004 |
| Bsp1407I | TGTACA | 2 cut(s) | 706, 1299 |
| Bsp19I | CCATGG | 3 cut(s) | 1677, 2591, 2613 |
| BspFNI | CGCG | 2 cut(s) | 1310, 3222 |
| BspHI | TCATGA | 4 cut(s) | 322, 640, 823, 2385 |
| BspLI | GGNNCC | 7 cut(s) | 211, 790, 1191, 2220, 2666, 3354, 3374 |
| BspMI | ACCTGC | 1 cut(s) | 2569 |
| BspOI | GCTAGC | 1 cut(s) | 38 |
| BspT104I | TTCGAA | 2 cut(s) | 2461, 2602 |
| BspT107I | GGYRCC | 1 cut(s) | 209 |
| BspTNI | GGTCTC | 1 cut(s) | 982 |
| BsrBI | CCGCTC | 3 cut(s) | 59, 71, 632 |
| BsrDI | GCAATG | 2 cut(s) | 690, 1128 |
| BsrGI | TGTACA | 2 cut(s) | 706, 1299 |
| BsrI | ACTGG | 7 cut(s) | 255, 518, 1259, 2017, 2326, 3077, 3136 |
| BssSI | CACGAG | 1 cut(s) | 3231 |
| BssT1I | CCWWGG | 4 cut(s) | 1677, 2591, 2613, 3376 |
| Bst2BI | CACGAG | 1 cut(s) | 3231 |
| Bst2UI | CCWGG | 3 cut(s) | 149, 732, 1646 |
| Bst4CI | ACNGT | 6 cut(s) | 169, 2215, 2737, 2804, 2839, 3203 |
| Bst6I | CTCTTC | 1 cut(s) | 2150 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 2099, 2404, 3427 |
| BstAUI | TGTACA | 2 cut(s) | 706, 1299 |
| BstBAI | YACGTR | 2 cut(s) | 795, 2966 |
| BstBI | TTCGAA | 2 cut(s) | 2461, 2602 |
| BstC8I | GCNNGC | 6 cut(s) | 36, 804, 915, 1843, 2100, 2169 |
| BstDSI | CCRYGG | 7 cut(s) | 404, 1308, 1488, 1677, 2591, 2613, 2803 |
| BstEII | GGTNACC | 1 cut(s) | 3336 |
| BstF5I | GGATG | 3 cut(s) | 2386, 2575, 2635 |
| BstFNI | CGCG | 2 cut(s) | 1310, 3222 |
| BstHHI | GCGC | 1 cut(s) | 3224 |
| BstMAI | GTCTC | 3 cut(s) | 982, 2780, 2984 |
| BstMCI | CGRYCG | 3 cut(s) | 1314, 2799, 2803 |
| BstNI | CCWGG | 3 cut(s) | 149, 732, 1646 |
| BstNSI | RCATGY | 2 cut(s) | 671, 2660 |
| BstPI | GGTNACC | 1 cut(s) | 3336 |
| BstSCI | CCNGG | 6 cut(s) | 147, 188, 189, 331, 730, 1644 |
| BstSLI | GKGCMC | 2 cut(s) | 1063, 3004 |
| BstUI | CGCG | 2 cut(s) | 1310, 3222 |
| BstV1I | GCAGC | 3 cut(s) | 439, 2283, 2899 |
| BstV2I | GAAGAC | 1 cut(s) | 2470 |
| BstX2I | RGATCY | 7 cut(s) | 184, 2631, 2664, 3169, 3277, 3316, 3372 |
| BstXI | CCANNNNNNTGG | 6 cut(s) | 82, 1645, 2089, 2229, 2851, 2970 |
| BstYI | RGATCY | 7 cut(s) | 184, 2631, 2664, 3169, 3277, 3316, 3372 |
| BstZI | CGGCCG | 2 cut(s) | 1311, 2796 |
| BsuI | GTATCC | 2 cut(s) | 668, 1723 |
| BtgI | CCRYGG | 7 cut(s) | 404, 1308, 1488, 1677, 2591, 2613, 2803 |
| BtrI | CACGTC | 2 cut(s) | 638, 865 |
| BtsCI | GGATG | 3 cut(s) | 2386, 2575, 2635 |
| BtsIMutI | CAGTG | 4 cut(s) | 262, 1063, 1623, 2742 |
| BveI | ACCTGC | 1 cut(s) | 2569 |
| Cac8I | GCNNGC | 6 cut(s) | 36, 804, 915, 1843, 2100, 2169 |
| CciI | TCATGA | 4 cut(s) | 322, 640, 823, 2385 |
| CfoI | GCGC | 1 cut(s) | 3224 |
| Cfr13I | GGNCC | 9 cut(s) | 54, 140, 789, 1576, 1734, 2218, 2543, 2610, 3353 |
| Cfr42I | CCGCGG | 1 cut(s) | 1311 |
| Cfr9I | CCCGGG | 1 cut(s) | 189 |
| CseI | GACGC | 2 cut(s) | 2631, 3200 |
| Csp6I | GTAC | 9 cut(s) | 480, 707, 1262, 1300, 1375, 2558, 2713, 3296, 3457 |
| CviQI | GTAC | 9 cut(s) | 480, 707, 1262, 1300, 1375, 2558, 2713, 3296, 3457 |
| DraI | TTTAAA | 3 cut(s) | 265, 298, 3450 |
| DraIII | CACNNNGTG | 1 cut(s) | 2839 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 869, 3248 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 869, 3248 |
| EagI | CGGCCG | 2 cut(s) | 1311, 2796 |
| Eam1104I | CTCTTC | 1 cut(s) | 2150 |
| EarI | CTCTTC | 1 cut(s) | 2150 |
| EciI | GGCGGA | 1 cut(s) | 406 |
| Ecl136II | GAGCTC | 3 cut(s) | 737, 935, 2426 |
| EclXI | CGGCCG | 2 cut(s) | 1311, 2796 |
| Eco130I | CCWWGG | 4 cut(s) | 1677, 2591, 2613, 3376 |
| Eco24I | GRGCYC | 4 cut(s) | 739, 937, 1912, 2428 |
| Eco31I | GGTCTC | 1 cut(s) | 982 |
| Eco32I | GATATC | 2 cut(s) | 2151, 2237 |
| Eco47I | GGWCC | 3 cut(s) | 1734, 2218, 2543 |
| Eco52I | CGGCCG | 2 cut(s) | 1311, 2796 |
| Eco53kI | GAGCTC | 3 cut(s) | 737, 935, 2426 |
| Eco57I | CTGAAG | 5 cut(s) | 717, 1683, 1821, 2088, 3291 |
| Eco72I | CACGTG | 1 cut(s) | 2966 |
| Eco88I | CYCGRG | 1 cut(s) | 189 |
| Eco91I | GGTNACC | 1 cut(s) | 3336 |
| EcoICRI | GAGCTC | 3 cut(s) | 737, 935, 2426 |
| EcoO65I | GGTNACC | 1 cut(s) | 3336 |
| EcoRII | CCWGG | 3 cut(s) | 147, 730, 1644 |
| EcoRV | GATATC | 2 cut(s) | 2151, 2237 |
| EcoT14I | CCWWGG | 4 cut(s) | 1677, 2591, 2613, 3376 |
| EcoT22I | ATGCAT | 3 cut(s) | 554, 1743, 2400 |
| EcoT38I | GRGCYC | 4 cut(s) | 739, 937, 1912, 2428 |
| ErhI | CCWWGG | 4 cut(s) | 1677, 2591, 2613, 3376 |
| Esp3I | CGTCTC | 1 cut(s) | 2780 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 218, 250, 1421, 1453 |
| FaqI | GGGAC | 4 cut(s) | 757, 1524, 1711, 1780 |
| FauI | CCCGC | 1 cut(s) | 795 |
| FauNDI | CATATG | 1 cut(s) | 3055 |
| FokI | GGATG | 3 cut(s) | 2393, 2562, 2622 |
| FriOI | GRGCYC | 4 cut(s) | 739, 937, 1912, 2428 |
| FspBI | CTAG | 7 cut(s) | 35, 275, 486, 899, 2669, 2727, 3183 |
| GlaI | GCGC | 1 cut(s) | 3223 |
| GsaI | CCCAGC | 3 cut(s) | 146, 1776, 2611 |
| GsuI | CTGGAG | 3 cut(s) | 753, 1800, 2534 |
| HapII | CCGG | 5 cut(s) | 190, 333, 343, 672, 3030 |
| HgaI | GACGC | 2 cut(s) | 2631, 3200 |
| HhaI | GCGC | 1 cut(s) | 3224 |
| Hin6I | GCGC | 1 cut(s) | 3222 |
| HinP1I | GCGC | 1 cut(s) | 3222 |
| HincII | GTYRAC | 1 cut(s) | 1829 |
| HindII | GTYRAC | 1 cut(s) | 1829 |
| HpaII | CCGG | 5 cut(s) | 190, 333, 343, 672, 3030 |
| HphI | GGTGA | 4 cut(s) | 1643, 1972, 3330, 3425 |
| Hpy166II | GTNNAC | 8 cut(s) | 386, 1061, 1375, 1569, 1590, 1829, 2218, 2715 |
| Hpy8I | GTNNAC | 8 cut(s) | 386, 1061, 1375, 1569, 1590, 1829, 2218, 2715 |
| Hpy99I | CGWCG | 1 cut(s) | 891 |
| HpyAV | CCTTC | 5 cut(s) | 95, 1204, 1796, 2405, 3283 |
| HpyCH4III | ACNGT | 6 cut(s) | 169, 2215, 2737, 2804, 2839, 3203 |
| HpyCH4IV | ACGT | 4 cut(s) | 637, 794, 864, 2965 |
| HpySE526I | ACGT | 4 cut(s) | 637, 794, 864, 2965 |
| HspAI | GCGC | 1 cut(s) | 3222 |
| KspI | CCGCGG | 1 cut(s) | 1311 |
| LmnI | GCTCC | 6 cut(s) | 68, 271, 629, 734, 2423, 3078 |
| Lsp1109I | GCAGC | 3 cut(s) | 439, 2283, 2899 |
| LweI | GCATC | 6 cut(s) | 1018, 1257, 2068, 2385, 3055, 3468 |
| MaeI | CTAG | 7 cut(s) | 35, 275, 486, 899, 2669, 2727, 3183 |
| MaeII | ACGT | 4 cut(s) | 637, 794, 864, 2965 |
| MaeIII | GTNAC | 3 cut(s) | 2209, 3153, 3336 |
| MbiI | CCGCTC | 3 cut(s) | 59, 71, 632 |
| MfeI | CAATTG | 2 cut(s) | 843, 1955 |
| MflI | RGATCY | 7 cut(s) | 184, 2631, 2664, 3169, 3277, 3316, 3372 |
| MhlI | GDGCHC | 6 cut(s) | 739, 937, 1063, 1912, 2428, 3004 |
| MlsI | TGGCCA | 3 cut(s) | 2843, 3060, 3441 |
| MluNI | TGGCCA | 3 cut(s) | 2843, 3060, 3441 |
| MlyI | GAGTC | 4 cut(s) | 1170, 1682, 1802, 3258 |
| Mox20I | TGGCCA | 3 cut(s) | 2843, 3060, 3441 |
| Mph1103I | ATGCAT | 3 cut(s) | 554, 1743, 2400 |
| MroXI | GAANNNNTTC | 3 cut(s) | 120, 1727, 1967 |
| MscI | TGGCCA | 3 cut(s) | 2843, 3060, 3441 |
| MslI | CAYNNNNRTG | 7 cut(s) | 751, 961, 1025, 1746, 2181, 2390, 3343 |
| Msp20I | TGGCCA | 3 cut(s) | 2843, 3060, 3441 |
| MspA1I | CMGCKG | 4 cut(s) | 802, 983, 1142, 1310 |
| MspI | CCGG | 5 cut(s) | 190, 333, 343, 672, 3030 |
| MspR9I | CCNGG | 6 cut(s) | 149, 190, 191, 333, 732, 1646 |
| MunI | CAATTG | 2 cut(s) | 843, 1955 |
| MvaI | CCWGG | 3 cut(s) | 149, 732, 1646 |
| MvnI | CGCG | 2 cut(s) | 1310, 3222 |
| NciI | CCSGG | 3 cut(s) | 190, 191, 333 |
| NcoI | CCATGG | 3 cut(s) | 1677, 2591, 2613 |
| NdeI | CATATG | 1 cut(s) | 3055 |
| NheI | GCTAGC | 1 cut(s) | 34 |
| NlaIV | GGNNCC | 7 cut(s) | 211, 790, 1191, 2220, 2666, 3354, 3374 |
| NmeAIII | GCCGAG | 3 cut(s) | 117, 178, 445 |
| NmuCI | GTSAC | 1 cut(s) | 3336 |
| NsiI | ATGCAT | 3 cut(s) | 554, 1743, 2400 |
| NspI | RCATGY | 2 cut(s) | 671, 2660 |
| NspV | TTCGAA | 2 cut(s) | 2461, 2602 |
| PagI | TCATGA | 4 cut(s) | 322, 640, 823, 2385 |
| PciI | ACATGT | 1 cut(s) | 2656 |
| PdmI | GAANNNNTTC | 3 cut(s) | 120, 1727, 1967 |
| PfeI | GAWTC | 7 cut(s) | 1125, 1934, 2250, 2536, 2856, 3403, 3491 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3326 |
| PfoI | TCCNGGA | 1 cut(s) | 730 |
| PleI | GAGTC | 4 cut(s) | 1170, 1681, 1801, 3257 |
| PmaCI | CACGTG | 1 cut(s) | 2966 |
| PmlI | CACGTG | 1 cut(s) | 2966 |
| PpsI | GAGTC | 4 cut(s) | 1170, 1681, 1801, 3257 |
| Ppu21I | YACGTR | 2 cut(s) | 795, 2966 |
| PscI | ACATGT | 1 cut(s) | 2656 |
| PshBI | ATTAAT | 3 cut(s) | 1922, 1950, 2952 |
| PsiI | TTATAA | 1 cut(s) | 239 |
| Psp124BI | GAGCTC | 3 cut(s) | 739, 937, 2428 |
| Psp6I | CCWGG | 3 cut(s) | 147, 730, 1644 |
| PspCI | CACGTG | 1 cut(s) | 2966 |
| PspEI | GGTNACC | 1 cut(s) | 3336 |
| PspFI | CCCAGC | 3 cut(s) | 142, 1772, 2607 |
| PspGI | CCWGG | 3 cut(s) | 147, 730, 1644 |
| PspN4I | GGNNCC | 7 cut(s) | 211, 790, 1191, 2220, 2666, 3354, 3374 |
| PspPI | GGNCC | 9 cut(s) | 54, 140, 789, 1576, 1734, 2218, 2543, 2610, 3353 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 348, 380 |
| PsuI | RGATCY | 7 cut(s) | 184, 2631, 2664, 3169, 3277, 3316, 3372 |
| PvuII | CAGCTG | 2 cut(s) | 983, 1142 |
| RsaI | GTAC | 9 cut(s) | 481, 708, 1263, 1301, 1376, 2559, 2714, 3297, 3458 |
| RsaNI | GTAC | 9 cut(s) | 480, 707, 1262, 1300, 1375, 2558, 2713, 3296, 3457 |
| RseI | CAYNNNNRTG | 7 cut(s) | 751, 961, 1025, 1746, 2181, 2390, 3343 |
| SacI | GAGCTC | 3 cut(s) | 739, 937, 2428 |
| SacII | CCGCGG | 1 cut(s) | 1311 |
| Sau96I | GGNCC | 9 cut(s) | 54, 140, 789, 1576, 1734, 2218, 2543, 2610, 3353 |
| ScaI | AGTACT | 2 cut(s) | 1263, 3297 |
| SchI | GAGTC | 4 cut(s) | 1170, 1682, 1802, 3258 |
| ScrFI | CCNGG | 6 cut(s) | 149, 190, 191, 333, 732, 1646 |
| SduI | GDGCHC | 6 cut(s) | 739, 937, 1063, 1912, 2428, 3004 |
| SfaNI | GCATC | 6 cut(s) | 1018, 1257, 2068, 2385, 3055, 3468 |
| Sfr303I | CCGCGG | 1 cut(s) | 1311 |
| SfuI | TTCGAA | 2 cut(s) | 2461, 2602 |
| SgrBI | CCGCGG | 1 cut(s) | 1311 |
| SinI | GGWCC | 3 cut(s) | 1734, 2218, 2543 |
| SmaI | CCCGGG | 1 cut(s) | 191 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 751, 961, 1025, 1746, 2181, 2390, 3343 |
| SmlI | CTYRAG | 1 cut(s) | 3144 |
| SmoI | CTYRAG | 1 cut(s) | 3144 |
| SspI | AATATT | 1 cut(s) | 687 |
| SspMI | CTAG | 7 cut(s) | 35, 275, 486, 899, 2669, 2727, 3183 |
| SstI | GAGCTC | 3 cut(s) | 739, 937, 2428 |
| StyD4I | CCNGG | 6 cut(s) | 147, 188, 189, 331, 730, 1644 |
| StyI | CCWWGG | 4 cut(s) | 1677, 2591, 2613, 3376 |
| TaaI | ACNGT | 6 cut(s) | 169, 2215, 2737, 2804, 2839, 3203 |
| TaiI | ACGT | 4 cut(s) | 640, 797, 867, 2968 |
| TaqI | TCGA | 9 cut(s) | 1322, 1425, 1746, 1791, 2153, 2461, 2602, 3178, 3406 |
| TaqII | GACCGA | 1 cut(s) | 1368 |
| TatI | WGTACW | 5 cut(s) | 706, 1261, 1299, 1374, 3295 |
| TauI | GCSGC | 7 cut(s) | 8, 59, 74, 635, 1310, 1313, 2062 |
| TfiI | GAWTC | 7 cut(s) | 1125, 1934, 2250, 2536, 2856, 3403, 3491 |
| TscAI | CASTG | 4 cut(s) | 262, 1063, 1623, 2742 |
| TseFI | GTSAC | 1 cut(s) | 3336 |
| TseI | GCWGC | 3 cut(s) | 427, 2271, 2912 |
| Tsp45I | GTSAC | 1 cut(s) | 3336 |
| TspGWI | ACGGA | 4 cut(s) | 678, 1477, 1775, 2556 |
| TspMI | CCCGGG | 1 cut(s) | 189 |
| TspRI | CASTG | 4 cut(s) | 262, 1063, 1623, 2742 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3326 |
| VneI | GTGCAC | 1 cut(s) | 1059 |
| VpaK11BI | GGWCC | 3 cut(s) | 1734, 2218, 2543 |
| VspI | ATTAAT | 3 cut(s) | 1922, 1950, 2952 |
| XapI | RAATTY | 8 cut(s) | 89, 120, 293, 645, 1111, 1389, 2305, 2415 |
| XceI | RCATGY | 2 cut(s) | 671, 2660 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1684 |
| XmaI | CCCGGG | 1 cut(s) | 189 |
| XmnI | GAANNNNTTC | 3 cut(s) | 120, 1727, 1967 |
| XspI | CTAG | 7 cut(s) | 35, 275, 486, 899, 2669, 2727, 3183 |
| ZrmI | AGTACT | 2 cut(s) | 1263, 3297 |
| Zsp2I | ATGCAT | 3 cut(s) | 554, 1743, 2400 |