FvH4_6g31924

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000160
Physical Location & Seq
Forward (+)
25026124 .. 25026618
495 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31924.t1

Sequence Viewer

Length: 495 bp
ATGTCTGAATTCTCGTTGCAATATGTTCCGCAAAAGGCAGTAAAAGGACAGGCAATAGCAGACTTTCTCGCTCATCACCCACTCTCAGAGCTCACGGCGTTTCGCGAATTGGAATTCGCTACCGTGACACTCGCTCCATGGACCCTGTACTTTGATGGTTCGCGGACTGACACCGCAGCCGGCGCCGGGATAACCATAGCCAATCCCGCCGGAGATCGCTTCTCCTGCTCGTTCCAGCTCGATTTCAAATGTACCAACAACCAGGCTGAGTACGAGGCGCTGATCATCGGCCTAGAGATTTTGTTGGATTTAGGAGTCCGCGAGGTTCAGTTCTTTGGCGATTCTTTGTTGGTCGTTAACCAGCTGGTGGAAAAGTTTAAGTGCTTAAGCTCATCAATTGAGCCATACCTGCGCAAGGCATTTGAGGTGTTGGATCGATTTGACGACGTTTACATCGAGCACATACCACGTGAGTTCAACTTCGCCGCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

165

Amino Acids

18.44

Weight (kDa)

4.65

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 51 - 163 1.1e-22 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 413
Acc36I ACCTGC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 367
AccII CGCG 3 cut(s) 105, 163, 321
AciI CCGC 6 cut(s) 29, 163, 174, 207, 319, 486
AclWI GGATC 1 cut(s) 441
AcsI RAATTY 2 cut(s) 8, 113
AcvI CACGTG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 3 cut(s) 149, 253, 272
AfiI CCNNNNNNNGG 3 cut(s) 186, 367, 415
AflII CTTAAG 1 cut(s) 385
AgsI TTSAA 2 cut(s) 247, 478
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 4 cut(s) 91, 238, 364, 390
AluI AGCT 4 cut(s) 91, 238, 364, 390
Alw21I GWGCWC 2 cut(s) 93, 462
AlwI GGATC 1 cut(s) 441
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 2 cut(s) 8, 113
AspLEI GCGC 3 cut(s) 185, 280, 414
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 141
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 93
BbrPI CACGTG 1 cut(s) 470
Bbv12I GWGCWC 2 cut(s) 93, 462
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 263
BclI TGATCA 1 cut(s) 282
BcnI CCSGG 1 cut(s) 187
BfaI CTAG 2 cut(s) 293, 493
BfoI RGCGCY 2 cut(s) 186, 281
BfrI CTTAAG 1 cut(s) 385
BfuAI ACCTGC 1 cut(s) 417
BisI GCNGC 2 cut(s) 177, 486
BlsI GCNGC 2 cut(s) 178, 487
Bme1390I CCNGG 2 cut(s) 187, 263
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 143, 184
BmrFI CCNGG 2 cut(s) 187, 263
BpuMI CCSGG 1 cut(s) 187
Bsa29I ATCGAT 1 cut(s) 436
BsaAI YACGTR 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 367, 415
Bse118I RCCGGY 1 cut(s) 179
BseBI CCWGG 1 cut(s) 263
BseCI ATCGAT 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 137
BseLI CCNNNNNNNGG 3 cut(s) 186, 367, 415
BseMII CTCAG 2 cut(s) 99, 258
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 3 cut(s) 105, 163, 321
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 436
BsiHKAI GWGCWC 2 cut(s) 93, 462
BsiSI CCGG 3 cut(s) 180, 186, 210
BslI CCNNNNNNNGG 3 cut(s) 186, 367, 415
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 2 cut(s) 93, 462
Bsp143I GATC 3 cut(s) 214, 282, 433
Bsp19I CCATGG 1 cut(s) 137
Bsp68I TCGCGA 1 cut(s) 105
BspACI CCGC 6 cut(s) 29, 163, 174, 207, 319, 486
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 2 cut(s) 98, 259
BspDI ATCGAT 1 cut(s) 436
BspFNI CGCG 3 cut(s) 105, 163, 321
BspLI GGNNCC 2 cut(s) 143, 184
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 3 cut(s) 214, 282, 433
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 385
BstBAI YACGTR 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 2 cut(s) 85, 267
BstDSI CCRYGG 1 cut(s) 137
BstENI CCTNNNNNAGG 1 cut(s) 413
BstFNI CGCG 3 cut(s) 105, 163, 321
BstH2I RGCGCY 2 cut(s) 186, 281
BstHHI GCGC 3 cut(s) 185, 280, 414
BstKTI GATC 3 cut(s) 217, 285, 436
BstMBI GATC 3 cut(s) 214, 282, 433
BstMWI GCNNNNNNNGC 4 cut(s) 182, 206, 225, 409
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 185, 261
BstUI CGCG 3 cut(s) 105, 163, 321
BstV1I GCAGC 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 436
BsuRI GGCC 1 cut(s) 291
BsuTUI ATCGAT 1 cut(s) 436
BtgI CCRYGG 1 cut(s) 137
BtuMI TCGCGA 1 cut(s) 105
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 181
CfoI GCGC 3 cut(s) 185, 280, 414
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 141
ClaI ATCGAT 1 cut(s) 436
Csp6I GTAC 3 cut(s) 148, 252, 271
CviAII CATG 1 cut(s) 138
CviJI RGCY 9 cut(s) 91, 179, 200, 238, 266, 291, 364, 390, 403
CviKI_1 RGCY 9 cut(s) 91, 179, 200, 238, 266, 291, 364, 390, 403
CviQI GTAC 3 cut(s) 148, 252, 271
DdeI CTNAG 2 cut(s) 85, 267
DinI GGCGCC 1 cut(s) 184
DpnI GATC 3 cut(s) 216, 284, 435
DpnII GATC 3 cut(s) 214, 282, 433
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 470
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRI GAATTC 2 cut(s) 8, 113
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 184
EheI GGCGCC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 1 cut(s) 141
FaiI YATR 5 cut(s) 24, 139, 197, 406, 464
FatI CATG 1 cut(s) 137
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 177, 486
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 2 cut(s) 177, 486
FspBI CTAG 2 cut(s) 293, 493
FspI TGCGCA 1 cut(s) 413
GlaI GCGC 3 cut(s) 184, 279, 413
GluI GCNGC 2 cut(s) 177, 486
HaeII RGCGCY 2 cut(s) 186, 281
HaeIII GGCC 1 cut(s) 291
HapII CCGG 3 cut(s) 180, 186, 210
HhaI GCGC 3 cut(s) 185, 280, 414
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 141
Hin6I GCGC 3 cut(s) 183, 278, 412
HinP1I GCGC 3 cut(s) 183, 278, 412
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 315, 341
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 3 cut(s) 180, 186, 210
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 2 cut(s) 358, 451
Hpy188I TCNGA 2 cut(s) 7, 88
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 2 cut(s) 358, 451
Hpy99I CGWCG 1 cut(s) 449
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 447, 469
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 206, 225, 409
HpyF3I CTNAG 2 cut(s) 85, 267
HpySE526I ACGT 2 cut(s) 447, 469
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 141
HspAI GCGC 3 cut(s) 183, 278, 412
KasI GGCGCC 1 cut(s) 182
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 282
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 3 cut(s) 214, 282, 433
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 2 cut(s) 293, 493
MaeII ACGT 2 cut(s) 447, 469
MaeIII GTNAC 1 cut(s) 124
MalI GATC 3 cut(s) 216, 284, 435
MboI GATC 3 cut(s) 214, 282, 433
MfeI CAATTG 1 cut(s) 396
MhlI GDGCHC 2 cut(s) 93, 462
MluCI AATT 4 cut(s) 8, 107, 113, 396
Mly113I GGCGCC 1 cut(s) 183
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 2 cut(s) 285, 411
MnlI CCTC 3 cut(s) 268, 316, 418
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 3 cut(s) 357, 378, 386
MspA1I CMGCKG 1 cut(s) 364
MspCI CTTAAG 1 cut(s) 385
MspI CCGG 3 cut(s) 180, 186, 210
MspR9I CCNGG 2 cut(s) 187, 263
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 263
MvnI CGCG 3 cut(s) 105, 163, 321
MwoI GCNNNNNNNGC 4 cut(s) 182, 206, 225, 409
NaeI GCCGGC 1 cut(s) 181
NarI GGCGCC 1 cut(s) 183
NciI CCSGG 1 cut(s) 187
NcoI CCATGG 1 cut(s) 137
NdeII GATC 3 cut(s) 214, 282, 433
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 2 cut(s) 143, 184
NmuCI GTSAC 1 cut(s) 124
NruI TCGCGA 1 cut(s) 105
NsbI TGCGCA 1 cut(s) 413
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 367
PkrI GCNGC 2 cut(s) 178, 487
PleI GAGTC 1 cut(s) 323
PluTI GGCGCC 1 cut(s) 186
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
PpsI GAGTC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 261
PspCI CACGTG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 143, 184
PspPI GGNCC 1 cut(s) 141
PvuII CAGCTG 1 cut(s) 364
RruI TCGCGA 1 cut(s) 105
RsaI GTAC 3 cut(s) 149, 253, 272
RsaNI GTAC 3 cut(s) 148, 252, 271
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 3 cut(s) 357, 378, 386
SatI GCNGC 2 cut(s) 177, 486
Sau3AI GATC 3 cut(s) 214, 282, 433
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 2 cut(s) 187, 263
SduI GDGCHC 2 cut(s) 93, 462
SetI ASST 9 cut(s) 93, 240, 327, 366, 392, 411, 429, 450, 472
SfoI GGCGCC 1 cut(s) 184
SinI GGWCC 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 4 cut(s) 8, 107, 113, 396
SsiI CCGC 6 cut(s) 29, 163, 174, 207, 319, 486
SspDI GGCGCC 1 cut(s) 182
SspMI CTAG 2 cut(s) 293, 493
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 185, 261
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 2 cut(s) 450, 472
TaqI TCGA 3 cut(s) 240, 436, 456
TasI AATT 4 cut(s) 8, 107, 113, 396
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 3 cut(s) 357, 378, 386
Tru9I TTAA 3 cut(s) 357, 378, 386
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 367
Vha464I CTTAAG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 141
XagI CCTNNNNNAGG 1 cut(s) 413
XapI RAATTY 2 cut(s) 8, 113
XspI CTAG 2 cut(s) 293, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.