Rroxscaffold_6G00429210

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000160
Physical Location & Seq
Forward (+)
49550706 .. 49563680
12975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00429210.1

Sequence Viewer

Length: 636 bp
ATGTTTACCCCATGGCGATCGCGGATATGTTGGTGGACGCGGTGGCAGGCCATGAATTGCTGTCCTTCATGGACGGTACTGCAGATATCACCGCATTCCGGTCGCCGAAGAAGACAGACACAAGACCGCTTTCCGCGCCCCGGCTTCGCGGGAGTTTTCGAATATGTGGTCATGCCGTTTCGGCCGAAGAATGCCGGTGCGACATATCAAAGAGCCATGAATTTGATCTTCCACGACATACCGGGAAAGGTTTTAGAGGTATACATTGATGACGTAGTCGTCAAGTCCCGAAGCGAGGGGATCACATCACGCATCTCGGAAAGTGTTCGAGCGCATGCGCCGCATAGACTCAAAATGAACCCGGCCAAGTGCGTGTTTGGGGTTCAAGCGGGGGACTTTCTAGGGTTTATAGTCCACCAACGAGGAATTGAGGTCCCGGAGGACAAGGCAAGCGCGGTCATTAATGCATCTTCCCCACGGACGAAGAAGGACTTACGGCGTCTTTTGGGTAAGATCAATTTTCTACGGCGGTTCATTTCTAACTCGCAGAAAAATCCAGCCCTTCTCACCTTTGCCGAGACCGCAAGGACGAGAATGAGTTTGTGTGGGAACCCCAAAGCATCAAGAGGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

211

Amino Acids

24.11

Weight (kDa)

11.02

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 48 - 138 4.6e-11 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 261
AccII CGCG 5 cut(s) 22, 40, 136, 149, 455
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 2 cut(s) 182, 363
AcsI RAATTY 1 cut(s) 220
AcyI GRCGYC 1 cut(s) 499
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 98, 140, 295
AgsI TTSAA 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 1 cut(s) 308
AoxI GGCC 3 cut(s) 48, 182, 363
ApoI RAATTY 1 cut(s) 220
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AseI ATTAAT 1 cut(s) 462
AsiSI GCGATCGC 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 4 cut(s) 138, 334, 340, 455
AspS9I GGNCC 1 cut(s) 433
AsuC2I CCSGG 4 cut(s) 141, 243, 362, 437
AsuHPI GGTGA 2 cut(s) 81, 559
AsuII TTCGAA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 118
BceAI ACGGC 3 cut(s) 160, 512, 542
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BcnI CCSGG 4 cut(s) 141, 243, 362, 437
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 80
BglI GCCNNNNNGGC 1 cut(s) 181
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 4 cut(s) 141, 243, 362, 437
Bme18I GGWCC 1 cut(s) 433
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 2 cut(s) 435, 611
BmrFI CCNGG 4 cut(s) 141, 243, 362, 437
BmsI GCATC 3 cut(s) 321, 476, 629
BpiI GAAGAC 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 159
BpuMI CCSGG 4 cut(s) 141, 243, 362, 437
BsaHI GRCGYC 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 11, 139, 476
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 140, 295
Bse118I RCCGGY 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 11, 139, 476
BseLI CCNNNNNNNGG 3 cut(s) 98, 140, 295
BseX3I CGGCCG 1 cut(s) 182
Bsh1236I CGCG 5 cut(s) 22, 40, 136, 149, 455
Bsh1285I CGRYCG 3 cut(s) 20, 103, 185
BshFI GGCC 3 cut(s) 50, 184, 365
BsiEI CGRYCG 3 cut(s) 20, 103, 185
BsiSI CCGG 6 cut(s) 99, 141, 195, 242, 362, 437
BslFI GGGAC 3 cut(s) 271, 407, 419
BslI CCNNNNNNNGG 3 cut(s) 98, 140, 295
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 3 cut(s) 271, 407, 419
BsmI GAATGC 2 cut(s) 94, 196
BsnI GGCC 3 cut(s) 50, 184, 365
Bso31I GGTCTC 1 cut(s) 572
Bsp119I TTCGAA 1 cut(s) 159
Bsp143I GATC 4 cut(s) 17, 225, 300, 513
Bsp19I CCATGG 1 cut(s) 11
BspANI GGCC 3 cut(s) 50, 184, 365
BspFNI CGCG 5 cut(s) 22, 40, 136, 149, 455
BspLI GGNNCC 2 cut(s) 435, 611
BspMAI CTGCAG 1 cut(s) 84
BspPI GGATC 1 cut(s) 308
BspT104I TTCGAA 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 572
BsrFI RCCGGY 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 11, 139, 476
BssMI GATC 4 cut(s) 17, 225, 300, 513
BssNAI GTATAC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 499
BssT1I CCWWGG 1 cut(s) 11
Bst1107I GTATAC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 499
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 48, 336, 451
BstDSI CCRYGG 2 cut(s) 11, 476
BstFNI CGCG 5 cut(s) 22, 40, 136, 149, 455
BstHHI GCGC 4 cut(s) 138, 334, 340, 455
BstKTI GATC 4 cut(s) 20, 228, 303, 516
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 4 cut(s) 17, 225, 300, 513
BstMCI CGRYCG 3 cut(s) 20, 103, 185
BstMWI GCNNNNNNNGC 4 cut(s) 135, 181, 340, 581
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 4 cut(s) 139, 241, 360, 435
BstSFI CTRYAG 1 cut(s) 80
BstUI CGCG 5 cut(s) 22, 40, 136, 149, 455
BstV2I GAAGAC 1 cut(s) 118
BstZ17I GTATAC 1 cut(s) 262
BstZI CGGCCG 1 cut(s) 182
BsuRI GGCC 3 cut(s) 50, 184, 365
BtgI CCRYGG 2 cut(s) 11, 476
Cac8I GCNNGC 3 cut(s) 48, 336, 451
CfoI GCGC 4 cut(s) 138, 334, 340, 455
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 433
CseI GACGC 2 cut(s) 46, 488
Csp6I GTAC 1 cut(s) 77
CviAII CATG 6 cut(s) 12, 52, 69, 172, 217, 335
CviJI RGCY 7 cut(s) 50, 144, 184, 215, 365, 560, 630
CviKI_1 RGCY 7 cut(s) 50, 144, 184, 215, 365, 560, 630
CviQI GTAC 1 cut(s) 77
DpnI GATC 4 cut(s) 19, 227, 302, 515
DpnII GATC 4 cut(s) 17, 225, 300, 513
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 2 cut(s) 182, 363
EagI CGGCCG 1 cut(s) 182
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 11
Eco31I GGTCTC 1 cut(s) 572
Eco32I GATATC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 433
Eco52I CGGCCG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 433
EcoRV GATATC 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 11
EcoT22I ATGCAT 1 cut(s) 469
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 6 cut(s) 15, 55, 72, 175, 220, 338
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 3 cut(s) 271, 407, 419
FatI CATG 6 cut(s) 11, 51, 68, 171, 216, 334
FauI CCCGC 2 cut(s) 142, 382
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 1 cut(s) 401
GlaI GCGC 4 cut(s) 137, 333, 339, 454
GluI GCNGC 1 cut(s) 341
HaeIII GGCC 3 cut(s) 50, 184, 365
HapII CCGG 6 cut(s) 99, 141, 195, 242, 362, 437
HgaI GACGC 2 cut(s) 46, 488
HhaI GCGC 4 cut(s) 138, 334, 340, 455
Hin1I GRCGYC 1 cut(s) 499
Hin1II CATG 6 cut(s) 15, 55, 72, 175, 220, 338
Hin6I GCGC 4 cut(s) 136, 332, 338, 453
HinP1I GCGC 4 cut(s) 136, 332, 338, 453
HinfI GANTC 1 cut(s) 348
HpaII CCGG 6 cut(s) 99, 141, 195, 242, 362, 437
HphI GGTGA 2 cut(s) 81, 559
Hpy166II GTNNAC 4 cut(s) 6, 36, 262, 415
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 2 cut(s) 288, 624
Hpy8I GTNNAC 4 cut(s) 6, 36, 262, 415
HpyAV CCTTC 3 cut(s) 75, 481, 572
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 82, 467
HpyF10VI GCNNNNNNNGC 4 cut(s) 135, 181, 340, 581
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 499
Hsp92II CATG 6 cut(s) 15, 55, 72, 175, 220, 338
HspAI GCGC 4 cut(s) 136, 332, 338, 453
Kzo9I GATC 4 cut(s) 17, 225, 300, 513
LpnPI CCDG 8 cut(s) 32, 112, 154, 208, 255, 375, 450, 570
LweI GCATC 3 cut(s) 321, 476, 629
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 273
MalI GATC 4 cut(s) 19, 227, 302, 515
MboI GATC 4 cut(s) 17, 225, 300, 513
MboII GAAGA 6 cut(s) 120, 123, 199, 220, 462, 496
MluCI AATT 4 cut(s) 55, 220, 426, 517
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 6 cut(s) 250, 289, 416, 424, 433, 620
Mph1103I ATGCAT 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 1 cut(s) 462
MspI CCGG 6 cut(s) 99, 141, 195, 242, 362, 437
MspR9I CCNGG 4 cut(s) 141, 243, 362, 437
Mva1269I GAATGC 2 cut(s) 94, 196
MvnI CGCG 5 cut(s) 22, 40, 136, 149, 455
MwoI GCNNNNNNNGC 4 cut(s) 135, 181, 340, 581
NciI CCSGG 4 cut(s) 141, 243, 362, 437
NcoI CCATGG 1 cut(s) 11
NdeII GATC 4 cut(s) 17, 225, 300, 513
NlaIII CATG 6 cut(s) 15, 55, 72, 175, 220, 338
NlaIV GGNNCC 2 cut(s) 435, 611
NmeAIII GCCGAG 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 338
NspV TTCGAA 1 cut(s) 159
PaeI GCATGC 1 cut(s) 338
PctI GAATGC 2 cut(s) 94, 196
PdmI GAANNNNTTC 1 cut(s) 324
PflFI GACNNNGTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 1 cut(s) 342
Ple19I CGATCG 1 cut(s) 20
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
PpuMI RGGWCCY 1 cut(s) 433
PshBI ATTAAT 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 435, 611
PspPI GGNCC 1 cut(s) 433
PspPPI RGGWCCY 1 cut(s) 433
PstI CTGCAG 1 cut(s) 84
PsyI GACNNNGTC 1 cut(s) 275
PvuI CGATCG 1 cut(s) 20
RgaI GCGATCGC 1 cut(s) 20
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 4 cut(s) 17, 225, 300, 513
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 4 cut(s) 141, 243, 362, 437
SetI ASST 5 cut(s) 252, 261, 276, 435, 572
SfaAI GCGATCGC 1 cut(s) 20
SfaNI GCATC 3 cut(s) 321, 476, 629
SfcI CTRYAG 1 cut(s) 80
SfuI TTCGAA 1 cut(s) 159
SgfI GCGATCGC 1 cut(s) 20
SinI GGWCC 1 cut(s) 433
SphI GCATGC 1 cut(s) 338
Sse9I AATT 4 cut(s) 55, 220, 426, 517
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 4 cut(s) 139, 241, 360, 435
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 159, 328
TasI AATT 4 cut(s) 55, 220, 426, 517
TauI GCSGC 1 cut(s) 343
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TspDTI ATGAA 5 cut(s) 57, 68, 233, 371, 523
TspGWI ACGGA 1 cut(s) 493
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 433
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 1 cut(s) 220
XceI RCATGY 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 401
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.