Rroxscaffold_177G00434340

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000177
OG0000160
Physical Location & Seq
Forward (+)
258109 .. 259918
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_177G00434340.1

Sequence Viewer

Length: 609 bp
ATGAGGAAGGAGTCGAGCATGCCATCTTCTACCTCGCAGGACACTTACCGATTGCGAAACAAGGTATACTCCTATGGAAAAGTTGTGTCTTACATCGTATTTCTCAACATGCAAGTTGCGCACTACATGTTATCCTTTACGACCCGCATCATCGCTCAAACCGACTTGGTCAAATACATGCCGTCGCGCCCTATTCTCGCGTGGTCGCATTGGCAAGTGGGTGCTGGCCCTATCCGAATTCTCGCTCCAATACGTTCCCCAAAAAGCAAAAGGGACAGCCATCACAGGGCAACGTTCATGGGAGGAGAGCTAGAGAAACTCATCGACGATTTGGGCATCCGCTCATCCACAAGCACTCCATATTATGCTCAGTCCAACGGTCAAGCGGAGGCCGAACAAGATTATTATTACCTTGCCGAAGAAGATGCGGTTGCAAACCCTCGCCGGTGGTACGACACGTTGTATGAGACACTATGGCCTATCGCACCTCCAAGCGGAATCCCACGGCTACAACGCCATATGCACTCATGTTTGGCCATGATGCAGTTCTACCTTTGGAACTCAATGTTCAATCCTTACGTGTGCAAGATCGCACCACTTGATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

202

Amino Acids

23.44

Weight (kDa)

9.28

Isoelectric Point (pI)

65.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000160)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g11612 FvH4_2g25851 FvH4_3g22802 FvH4_3g22805 FvH4_3g31361 FvH4_3g31382 FvH4_4g05272 FvH4_4g05273 FvH4_4g14567 FvH4_4g15161 FvH4_5g22540 FvH4_6g13113 FvH4_6g31923 FvH4_6g31924 FvH4_6g33651 FvH4_6g45122 FvH4_7g03662
pyrus_communis pycom01g04240 pycom01g24010 pycom02g18210 pycom02g19420 pycom05g06510 pycom09g15750 pycom09g18940 pycom12g02580 pycom12g03100 pycom12g08310 pycom13g22710 pycom13g28060 pycom16g18340 pycom16g18350 pycom16g24880 pycom16g26240 pycom461g00260 pycom520g00980 pycom520g01320
rosa_chinensis RchiOBHm_Chr1g0320731 RchiOBHm_Chr2g0102771 RchiOBHm_Chr3g0462151 RchiOBHm_Chr5g0038141 RchiOBHm_Chr5g0069371 RchiOBHm_Chr7g0239101
rosa_multiflora Rmu_co8038252.1_g000001 Rmu_co8138412.1_g000001 Rmu_co8331087.1_g000001 Rmu_co8479311.1_g000001 Rmu_sc0000112.1_g000018 Rmu_sc0000346.1_g000012 Rmu_sc0002102.1_g000002 Rmu_sc0003505.1_g000013 Rmu_sc0004249.1_g000007 Rmu_sc0004448.1_g000010 Rmu_sc0004594.1_g000011 Rmu_sc0004915.1_g000010 Rmu_sc0008019.1_g000019 Rmu_sc0008303.1_g000001 Rmu_sc0008355.1_g000005 Rmu_sc0009253.1_g000018 Rmu_sc0010211.1_g000002 Rmu_sc0010252.1_g000009 Rmu_sc0011534.1_g000008 Rmu_sc0014811.1_g000009 Rmu_sc0019475.1_g000001 Rmu_sc0024897.1_g000001 Rmu_sc0024898.1_g000001 Rmu_sc0031791.1_g000001 Rmu_sc0038715.1_g000001
rosa_roxburghii Rroxscaffold_165G00436940 Rroxscaffold_174G00435270 Rroxscaffold_177G00434330 Rroxscaffold_177G00434340 Rroxscaffold_177G00434350 Rroxscaffold_1G00002160 Rroxscaffold_1G00025260 Rroxscaffold_1G00042950 Rroxscaffold_1G00068010 Rroxscaffold_2G00107530 Rroxscaffold_3G00221190 Rroxscaffold_3G00221520 Rroxscaffold_3G00223200 Rroxscaffold_4G00322230 Rroxscaffold_4G00331810 Rroxscaffold_5G00385150 Rroxscaffold_5G00387510 Rroxscaffold_6G00410520 Rroxscaffold_6G00423360 Rroxscaffold_6G00423370 Rroxscaffold_6G00429210 Rroxscaffold_7G00158300 Rroxscaffold_7G00163480 Rroxscaffold_7G00171410 Rroxscaffold_7G00178940 Rroxscaffold_7G00199480 Rroxscaffold_7G00205630 Rroxscaffold_7G00207440
rosa_rugosa Rorug01G0056400 Rorug04G0063900 Rorug05G0251400 Rorug07G0221900
rosa_samantha Rh1DG169400 Rh2AG292900 Rh2DG519200 Rh4DG260600 Rh5AG042600 Rh6BG117500
rosa_wichuraiana Rw0G001900 Rw0G005150 Rw0G006380 Rw0G015140 Rw0G016320 Rw0G019440 Rw0G019840 Rw0G023740 Rw1G001590 Rw1G002180 Rw1G003560 Rw1G004280 Rw1G006110 Rw1G006680 Rw1G007920 Rw1G008480 Rw1G009120 Rw1G010310 Rw1G014900 Rw1G019650 Rw1G022070 Rw1G022170 Rw1G041570 Rw2G002740 Rw2G005760 Rw2G032370 Rw2G046770 Rw2G050600 Rw2G051420 Rw3G015930 Rw3G016280 Rw3G019580 Rw3G028420 Rw4G003430 Rw4G005350 Rw4G007530 Rw4G008150 Rw4G009580 Rw4G010250 Rw4G015800 Rw4G017000 Rw4G017910 Rw4G018510 Rw4G019700 Rw4G031010 Rw5G012650 Rw5G020140 Rw5G022060 Rw5G034420 Rw5G035560 Rw5G043010 Rw5G046750 Rw5G047340 Rw5G049500 Rw6G001390 Rw6G002210 Rw6G004530 Rw6G004770 Rw6G005100 Rw6G005890 Rw6G011860 Rw6G014680 Rw6G019480 Rw6G028970 Rw6G033800 Rw7G013050 Rw7G014800 Rw7G025760 Rw7G025850 Rw7G026730 Rw7G026870 Rw7G036330 Rw7G036430 Rw7G039320 Rw7G039510 Rw7G039560 Rw7G041370 Rw7G042050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 66
AccII CGCG 2 cut(s) 187, 200
AciI CCGC 5 cut(s) 145, 340, 386, 428, 495
AclI AACGTT 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 237
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 2 cut(s) 286, 494
AflIII ACRYGT 3 cut(s) 126, 456, 579
AgsI TTSAA 1 cut(s) 571
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 461
AoxI GGCC 4 cut(s) 226, 390, 476, 534
ApoI RAATTY 1 cut(s) 237
AspLEI GCGC 2 cut(s) 121, 189
AspS9I GGNCC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 536
BccI CCATC 2 cut(s) 31, 288
BceAI ACGGC 2 cut(s) 166, 521
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 227
BmsI GCATC 4 cut(s) 156, 345, 415, 531
BsaAI YACGTR 1 cut(s) 580
BsaJI CCNNGG 1 cut(s) 503
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 494
Bse118I RCCGGY 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 2 cut(s) 336, 344
BseLI CCNNNNNNNGG 2 cut(s) 286, 494
BseMII CTCAG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 318
Bsh1236I CGCG 2 cut(s) 187, 200
BshFI GGCC 4 cut(s) 228, 392, 478, 536
BsiSI CCGG 1 cut(s) 445
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 286, 494
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 287
BsnI GGCC 4 cut(s) 228, 392, 478, 536
Bsp143I GATC 2 cut(s) 588, 601
BspACI CCGC 5 cut(s) 145, 340, 386, 428, 495
BspANI GGCC 4 cut(s) 228, 392, 478, 536
BspCNI CTCAG 1 cut(s) 382
BspFNI CGCG 2 cut(s) 187, 200
BsrBI CCGCTC 1 cut(s) 342
BsrFI RCCGGY 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 2 cut(s) 588, 601
BssNAI GTATAC 1 cut(s) 67
Bst1107I GTATAC 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 580
BstC8I GCNNGC 2 cut(s) 20, 226
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 2 cut(s) 336, 344
BstFNI CGCG 2 cut(s) 187, 200
BstHHI GCGC 2 cut(s) 121, 189
BstKTI GATC 2 cut(s) 591, 604
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 2 cut(s) 588, 601
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNSI RCATGY 4 cut(s) 22, 112, 130, 181
BstUI CGCG 2 cut(s) 187, 200
BstZ17I GTATAC 1 cut(s) 67
BsuRI GGCC 4 cut(s) 228, 392, 478, 536
BtgI CCRYGG 1 cut(s) 503
BtgZI GCGATG 1 cut(s) 136
BtsCI GGATG 2 cut(s) 336, 344
Cac8I GCNNGC 2 cut(s) 20, 226
CfoI GCGC 2 cut(s) 121, 189
Cfr10I RCCGGY 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 451
CviAII CATG 7 cut(s) 19, 109, 127, 178, 298, 528, 538
CviJI RGCY 7 cut(s) 228, 279, 310, 392, 478, 508, 536
CviKI_1 RGCY 7 cut(s) 228, 279, 310, 392, 478, 508, 536
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 369
DpnI GATC 2 cut(s) 590, 603
DpnII GATC 2 cut(s) 588, 601
EaeI YGGCCR 1 cut(s) 534
EcoRI GAATTC 1 cut(s) 237
FaeI CATG 7 cut(s) 22, 112, 130, 181, 301, 531, 541
FaqI GGGAC 1 cut(s) 287
FatI CATG 7 cut(s) 18, 108, 126, 177, 297, 527, 537
FauI CCCGC 1 cut(s) 152
FauNDI CATATG 1 cut(s) 519
FblI GTMKAC 1 cut(s) 66
FokI GGATG 2 cut(s) 323, 331
FspBI CTAG 1 cut(s) 311
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 2 cut(s) 120, 188
HaeIII GGCC 4 cut(s) 228, 392, 478, 536
HapII CCGG 1 cut(s) 445
HhaI GCGC 2 cut(s) 121, 189
Hin1II CATG 7 cut(s) 22, 112, 130, 181, 301, 531, 541
Hin6I GCGC 2 cut(s) 119, 187
HinP1I GCGC 2 cut(s) 119, 187
HinfI GANTC 2 cut(s) 11, 498
HpaII CCGG 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 2 cut(s) 187, 329
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 4 cut(s) 253, 293, 458, 579
HpyCH4V TGCA 5 cut(s) 112, 434, 523, 544, 585
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 4 cut(s) 253, 293, 458, 579
Hsp92II CATG 7 cut(s) 22, 112, 130, 181, 301, 531, 541
HspAI GCGC 2 cut(s) 119, 187
Kzo9I GATC 2 cut(s) 588, 601
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 4 cut(s) 23, 210, 271, 458
LweI GCATC 4 cut(s) 156, 345, 415, 531
MaeI CTAG 1 cut(s) 311
MaeII ACGT 4 cut(s) 253, 293, 458, 579
MalI GATC 2 cut(s) 590, 603
MbiI CCGCTC 1 cut(s) 342
MboI GATC 2 cut(s) 588, 601
MboII GAAGA 3 cut(s) 18, 431, 434
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 5 cut(s) 43, 296, 382, 450, 498
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
Msp20I TGGCCA 1 cut(s) 536
MspI CCGG 1 cut(s) 445
MvnI CGCG 2 cut(s) 187, 200
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeI CATATG 1 cut(s) 519
NdeII GATC 2 cut(s) 588, 601
NlaIII CATG 7 cut(s) 22, 112, 130, 181, 301, 531, 541
NsbI TGCGCA 1 cut(s) 120
NspI RCATGY 4 cut(s) 22, 112, 130, 181
PaeI GCATGC 1 cut(s) 22
PciI ACATGT 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 498
PflFI GACNNNGTC 1 cut(s) 167
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 580
PscI ACATGT 1 cut(s) 126
Psp1406I AACGTT 1 cut(s) 293
PspPI GGNCC 1 cut(s) 227
PsyI GACNNNGTC 1 cut(s) 167
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
Sau3AI GATC 2 cut(s) 588, 601
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 20
SfaNI GCATC 4 cut(s) 156, 345, 415, 531
SgrAI CRCCGGYG 1 cut(s) 444
SphI GCATGC 1 cut(s) 22
Sse9I AATT 1 cut(s) 237
SsiI CCGC 5 cut(s) 145, 340, 386, 428, 495
SspMI CTAG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 4 cut(s) 256, 296, 461, 582
TaqI TCGA 2 cut(s) 14, 324
TasI AATT 1 cut(s) 237
TfiI GAWTC 1 cut(s) 498
TspDTI ATGAA 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 167
XapI RAATTY 1 cut(s) 237
XceI RCATGY 4 cut(s) 22, 112, 130, 181
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.