Uncharacterized protein K02A2.6-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 883 - 1042 | 1.3e-32 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 1106 - 1204 | 2.4e-24 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 1134 - 1235 | 6e-25 | RNase H-like domain found in reverse transcriptase |
| RVT_3 | PF13456 | 1286 - 1405 | 1.3e-22 | Reverse transcriptase-like |
| Integrase_H2C2 | PF17921 | 1505 - 1560 | 1.8e-07 | Integrase zinc binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2805 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 161 |
| Acc16I | TGCGCA | 1 cut(s) | 180 |
| Acc36I | ACCTGC | 2 cut(s) | 3813, 4879 |
| Acc65I | GGTACC | 1 cut(s) | 3132 |
| AccB1I | GGYRCC | 6 cut(s) | 469, 2771, 2821, 3132, 3385, 5318 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1442, 2074 |
| AccBSI | CCGCTC | 2 cut(s) | 1066, 3572 |
| AccI | GTMKAC | 3 cut(s) | 2868, 2979, 5142 |
| AccII | CGCG | 1 cut(s) | 2013 |
| AccIII | TCCGGA | 3 cut(s) | 359, 3051, 3665 |
| AclI | AACGTT | 2 cut(s) | 698, 3966 |
| AcoI | YGGCCR | 1 cut(s) | 4619 |
| AcsI | RAATTY | 7 cut(s) | 213, 488, 1397, 1736, 2249, 3196, 5339 |
| AcuI | CTGAAG | 5 cut(s) | 1472, 2592, 2847, 2926, 5172 |
| AcvI | CACGTG | 1 cut(s) | 1970 |
| AcyI | GRCGYC | 2 cut(s) | 2381, 5319 |
| AdeI | CACNNNGTG | 1 cut(s) | 3775 |
| AfeI | AGCGCT | 1 cut(s) | 2030 |
| AflII | CTTAAG | 1 cut(s) | 388 |
| AflIII | ACRYGT | 5 cut(s) | 781, 870, 1867, 1969, 3717 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 5276 |
| AleI | CACNNNNGTG | 1 cut(s) | 2147 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5352, 5384 |
| Alw21I | GWGCWC | 8 cut(s) | 418, 2374, 2553, 2841, 3015, 4335, 4567, 5126 |
| Alw26I | GTCTC | 9 cut(s) | 118, 1777, 1978, 2062, 2503, 4330, 4423, 5044, 5355 |
| Alw44I | GTGCAC | 1 cut(s) | 5122 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1793 |
| Ama87I | CYCGRG | 1 cut(s) | 626 |
| Aor13HI | TCCGGA | 3 cut(s) | 359, 3051, 3665 |
| Aor51HI | AGCGCT | 1 cut(s) | 2030 |
| ApaI | GGGCCC | 2 cut(s) | 575, 5441 |
| ApaLI | GTGCAC | 1 cut(s) | 5122 |
| ApeKI | GCWGC | 7 cut(s) | 1432, 3764, 3847, 4214, 4523, 4589, 4811 |
| ApoI | RAATTY | 7 cut(s) | 213, 488, 1397, 1736, 2249, 3196, 5339 |
| Asp718I | GGTACC | 1 cut(s) | 3132 |
| AspLEI | GCGC | 4 cut(s) | 181, 1767, 2031, 5321 |
| AsuC2I | CCSGG | 2 cut(s) | 788, 2606 |
| AsuII | TTCGAA | 2 cut(s) | 3959, 4740 |
| AvaI | CYCGRG | 1 cut(s) | 626 |
| AvaII | GGWCC | 5 cut(s) | 345, 2347, 4479, 4577, 4921 |
| AxyI | CCTNAGG | 4 cut(s) | 498, 576, 1488, 5076 |
| BaeGI | GKGCMC | 4 cut(s) | 575, 1166, 5126, 5441 |
| BamHI | GGATCC | 1 cut(s) | 1026 |
| BanI | GGYRCC | 6 cut(s) | 469, 2771, 2821, 3132, 3385, 5318 |
| BanII | GRGCYC | 6 cut(s) | 575, 866, 2553, 2841, 4567, 5441 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 5145, 5177 |
| BbrPI | CACGTG | 1 cut(s) | 1970 |
| BbsI | GAAGAC | 4 cut(s) | 2235, 2835, 3807, 5452 |
| Bbv12I | GWGCWC | 8 cut(s) | 418, 2374, 2553, 2841, 3015, 4335, 4567, 5126 |
| BbvCI | CCTCAGC | 2 cut(s) | 833, 2343 |
| BbvI | GCAGC | 7 cut(s) | 1444, 3776, 3859, 4226, 4535, 4601, 4798 |
| BceAI | ACGGC | 1 cut(s) | 367 |
| BciVI | GTATCC | 1 cut(s) | 1127 |
| BclI | TGATCA | 3 cut(s) | 3, 1696, 3987 |
| BcnI | CCSGG | 2 cut(s) | 788, 2606 |
| BcoDI | GTCTC | 9 cut(s) | 118, 1777, 1978, 2062, 2503, 4330, 4423, 5044, 5355 |
| BfaI | CTAG | 6 cut(s) | 219, 1991, 3554, 3870, 4401, 5168 |
| BfmI | CTRYAG | 3 cut(s) | 2401, 4977, 5092 |
| BfoI | RGCGCY | 2 cut(s) | 2032, 5322 |
| BfrI | CTTAAG | 1 cut(s) | 388 |
| BfuAI | ACCTGC | 2 cut(s) | 3813, 4879 |
| BfuI | GTATCC | 1 cut(s) | 1127 |
| BglII | AGATCT | 2 cut(s) | 2405, 2692 |
| BlpI | GCTNAGC | 3 cut(s) | 1497, 3673, 4593 |
| BmcAI | AGTACT | 2 cut(s) | 4379, 4494 |
| Bme18I | GGWCC | 5 cut(s) | 345, 2347, 4479, 4577, 4921 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 5276 |
| BmeT110I | CYCGRG | 1 cut(s) | 626 |
| BmrI | ACTGGG | 2 cut(s) | 351, 2639 |
| BmuI | ACTGGG | 2 cut(s) | 351, 2639 |
| BpiI | GAAGAC | 4 cut(s) | 2235, 2835, 3807, 5452 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 14, 46, 593, 625 |
| BpmI | CTGGAG | 5 cut(s) | 1160, 2229, 2399, 3357, 4686 |
| Bpu10I | CCTNAGC | 3 cut(s) | 833, 1823, 2343 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1497, 3673, 4593 |
| Bpu14I | TTCGAA | 2 cut(s) | 3959, 4740 |
| BpuEI | CTTGAG | 7 cut(s) | 566, 1052, 1835, 3049, 3350, 4019, 5292 |
| BpuMI | CCSGG | 2 cut(s) | 788, 2606 |
| BsaAI | YACGTR | 3 cut(s) | 1970, 3718, 4426 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 1356 |
| BsaHI | GRCGYC | 2 cut(s) | 2381, 5319 |
| BsaI | GGTCTC | 1 cut(s) | 5044 |
| BsaWI | WCCGGW | 4 cut(s) | 359, 1023, 3051, 3665 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1251, 1281, 4640, 4670, 5352, 5382, 5426, 5456 |
| Bse118I | RCCGGY | 1 cut(s) | 4574 |
| Bse21I | CCTNAGG | 4 cut(s) | 498, 576, 1488, 5076 |
| Bse3DI | GCAATG | 2 cut(s) | 812, 3446 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 1356 |
| BseAI | TCCGGA | 3 cut(s) | 359, 3051, 3665 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 1356 |
| BseMI | GCAATG | 2 cut(s) | 812, 3446 |
| BseRI | GAGGAG | 5 cut(s) | 2402, 3046, 3177, 3353, 3894 |
| BseSI | GKGCMC | 4 cut(s) | 575, 1166, 5126, 5441 |
| BseXI | GCAGC | 7 cut(s) | 1444, 3776, 3859, 4226, 4535, 4601, 4798 |
| BseYI | CCCAGC | 2 cut(s) | 2265, 2514 |
| Bsh1236I | CGCG | 1 cut(s) | 2013 |
| BshNI | GGYRCC | 6 cut(s) | 469, 2771, 2821, 3132, 3385, 5318 |
| BsiHKAI | GWGCWC | 8 cut(s) | 418, 2374, 2553, 2841, 3015, 4335, 4567, 5126 |
| BsiHKCI | CYCGRG | 1 cut(s) | 626 |
| BsiSI | CCGG | 8 cut(s) | 360, 788, 1024, 2605, 3052, 3666, 3809, 4575 |
| BsmAI | GTCTC | 9 cut(s) | 118, 1777, 1978, 2062, 2503, 4330, 4423, 5044, 5355 |
| BsmBI | CGTCTC | 1 cut(s) | 4423 |
| BsmI | GAATGC | 4 cut(s) | 663, 2908, 3089, 4955 |
| Bso31I | GGTCTC | 1 cut(s) | 5044 |
| BsoBI | CYCGRG | 1 cut(s) | 626 |
| Bsp119I | TTCGAA | 2 cut(s) | 3959, 4740 |
| Bsp120I | GGGCCC | 2 cut(s) | 571, 5437 |
| Bsp13I | TCCGGA | 3 cut(s) | 359, 3051, 3665 |
| Bsp1407I | TGTACA | 1 cut(s) | 4470 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1497, 3673, 4593 |
| Bsp19I | CCATGG | 3 cut(s) | 1158, 4039, 4917 |
| BspEI | TCCGGA | 3 cut(s) | 359, 3051, 3665 |
| BspFNI | CGCG | 1 cut(s) | 2013 |
| BspHI | TCATGA | 2 cut(s) | 13, 1662 |
| BspMI | ACCTGC | 2 cut(s) | 3813, 4879 |
| BspQI | GCTCTTC | 1 cut(s) | 2829 |
| BspT104I | TTCGAA | 2 cut(s) | 3959, 4740 |
| BspT107I | GGYRCC | 6 cut(s) | 469, 2771, 2821, 3132, 3385, 5318 |
| BspTI | CTTAAG | 1 cut(s) | 388 |
| BspTNI | GGTCTC | 1 cut(s) | 5044 |
| BsrBI | CCGCTC | 2 cut(s) | 1066, 3572 |
| BsrDI | GCAATG | 2 cut(s) | 812, 3446 |
| BsrFI | RCCGGY | 1 cut(s) | 4574 |
| BsrGI | TGTACA | 1 cut(s) | 4470 |
| BssAI | RCCGGY | 1 cut(s) | 4574 |
| BssNAI | GTATAC | 2 cut(s) | 2869, 5143 |
| BssNI | GRCGYC | 2 cut(s) | 2381, 5319 |
| BssT1I | CCWWGG | 8 cut(s) | 464, 1158, 1262, 2332, 3115, 3558, 4039, 4917 |
| Bst1107I | GTATAC | 2 cut(s) | 2869, 5143 |
| Bst6I | CTCTTC | 9 cut(s) | 267, 404, 441, 876, 939, 1689, 2829, 4512, 4716 |
| BstACI | GRCGYC | 2 cut(s) | 2381, 5319 |
| BstAFI | CTTAAG | 1 cut(s) | 388 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3452, 4668, 4961 |
| BstAUI | TGTACA | 1 cut(s) | 4470 |
| BstBAI | YACGTR | 3 cut(s) | 1970, 3718, 4426 |
| BstBI | TTCGAA | 2 cut(s) | 3959, 4740 |
| BstDSI | CCRYGG | 3 cut(s) | 1158, 4039, 4917 |
| BstEII | GGTNACC | 1 cut(s) | 559 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 2920, 3393, 5075 |
| BstFNI | CGCG | 1 cut(s) | 2013 |
| BstH2I | RGCGCY | 2 cut(s) | 2032, 5322 |
| BstHHI | GCGC | 4 cut(s) | 181, 1767, 2031, 5321 |
| BstMAI | GTCTC | 9 cut(s) | 118, 1777, 1978, 2062, 2503, 4330, 4423, 5044, 5355 |
| BstPI | GGTNACC | 1 cut(s) | 559 |
| BstSFI | CTRYAG | 3 cut(s) | 2401, 4977, 5092 |
| BstSLI | GKGCMC | 4 cut(s) | 575, 1166, 5126, 5441 |
| BstUI | CGCG | 1 cut(s) | 2013 |
| BstV1I | GCAGC | 7 cut(s) | 1444, 3776, 3859, 4226, 4535, 4601, 4798 |
| BstV2I | GAAGAC | 4 cut(s) | 2235, 2835, 3807, 5452 |
| BstX2I | RGATCY | 8 cut(s) | 432, 1026, 2405, 2467, 2667, 2692, 4175, 5172 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1277, 2629, 3315, 4679 |
| BstYI | RGATCY | 8 cut(s) | 432, 1026, 2405, 2467, 2667, 2692, 4175, 5172 |
| BstZ17I | GTATAC | 2 cut(s) | 2869, 5143 |
| Bsu36I | CCTNAGG | 4 cut(s) | 498, 576, 1488, 5076 |
| BsuI | GTATCC | 1 cut(s) | 1127 |
| BtgI | CCRYGG | 3 cut(s) | 1158, 4039, 4917 |
| BtsI | GCAGTG | 2 cut(s) | 87, 5163 |
| BveI | ACCTGC | 2 cut(s) | 3813, 4879 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1793 |
| CciI | TCATGA | 2 cut(s) | 13, 1662 |
| CfoI | GCGC | 4 cut(s) | 181, 1767, 2031, 5321 |
| Cfr10I | RCCGGY | 1 cut(s) | 4574 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1720, 1755 |
| DinI | GGCGCC | 1 cut(s) | 5320 |
| DraI | TTTAAA | 2 cut(s) | 1366, 2898 |
| DraIII | CACNNNGTG | 1 cut(s) | 3775 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 161 |
| DriI | GACNNNNNGTC | 1 cut(s) | 5276 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 161 |
| EaeI | YGGCCR | 1 cut(s) | 4619 |
| Eam1104I | CTCTTC | 9 cut(s) | 267, 404, 441, 876, 939, 1689, 2829, 4512, 4716 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 5276 |
| EarI | CTCTTC | 9 cut(s) | 267, 404, 441, 876, 939, 1689, 2829, 4512, 4716 |
| EciI | GGCGGA | 1 cut(s) | 611 |
| Ecl136II | GAGCTC | 3 cut(s) | 2551, 2839, 4565 |
| Eco130I | CCWWGG | 8 cut(s) | 464, 1158, 1262, 2332, 3115, 3558, 4039, 4917 |
| Eco147I | AGGCCT | 1 cut(s) | 5386 |
| Eco24I | GRGCYC | 6 cut(s) | 575, 866, 2553, 2841, 4567, 5441 |
| Eco31I | GGTCTC | 1 cut(s) | 5044 |
| Eco32I | GATATC | 1 cut(s) | 3709 |
| Eco47I | GGWCC | 5 cut(s) | 345, 2347, 4479, 4577, 4921 |
| Eco47III | AGCGCT | 1 cut(s) | 2030 |
| Eco53kI | GAGCTC | 3 cut(s) | 2551, 2839, 4565 |
| Eco57I | CTGAAG | 5 cut(s) | 1472, 2592, 2847, 2926, 5172 |
| Eco72I | CACGTG | 1 cut(s) | 1970 |
| Eco81I | CCTNAGG | 4 cut(s) | 498, 576, 1488, 5076 |
| Eco88I | CYCGRG | 1 cut(s) | 626 |
| Eco91I | GGTNACC | 1 cut(s) | 559 |
| EcoICRI | GAGCTC | 3 cut(s) | 2551, 2839, 4565 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 2920, 3393, 5075 |
| EcoO109I | RGGNCCY | 6 cut(s) | 345, 571, 572, 2347, 4479, 5437 |
| EcoO65I | GGTNACC | 1 cut(s) | 559 |
| EcoRI | GAATTC | 1 cut(s) | 2249 |
| EcoRV | GATATC | 1 cut(s) | 3709 |
| EcoT14I | CCWWGG | 8 cut(s) | 464, 1158, 1262, 2332, 3115, 3558, 4039, 4917 |
| EcoT22I | ATGCAT | 1 cut(s) | 4957 |
| EcoT38I | GRGCYC | 6 cut(s) | 575, 866, 2553, 2841, 4567, 5441 |
| EgeI | GGCGCC | 1 cut(s) | 5320 |
| EheI | GGCGCC | 1 cut(s) | 5320 |
| ErhI | CCWWGG | 8 cut(s) | 464, 1158, 1262, 2332, 3115, 3558, 4039, 4917 |
| Esp3I | CGTCTC | 1 cut(s) | 4423 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 60, 92, 127, 159 |
| FauI | CCCGC | 2 cut(s) | 2018, 4291 |
| FauNDI | CATATG | 2 cut(s) | 1276, 5476 |
| FbaI | TGATCA | 3 cut(s) | 3, 1696, 3987 |
| FblI | GTMKAC | 3 cut(s) | 2868, 2979, 5142 |
| FriOI | GRGCYC | 6 cut(s) | 575, 866, 2553, 2841, 4567, 5441 |
| FspAI | RTGCGCAY | 1 cut(s) | 180 |
| FspBI | CTAG | 6 cut(s) | 219, 1991, 3554, 3870, 4401, 5168 |
| FspI | TGCGCA | 1 cut(s) | 180 |
| GlaI | GCGC | 4 cut(s) | 180, 1766, 2030, 5320 |
| GsaI | CCCAGC | 2 cut(s) | 2269, 2518 |
| GsuI | CTGGAG | 5 cut(s) | 1160, 2229, 2399, 3357, 4686 |
| HaeII | RGCGCY | 2 cut(s) | 2032, 5322 |
| HapII | CCGG | 8 cut(s) | 360, 788, 1024, 2605, 3052, 3666, 3809, 4575 |
| HhaI | GCGC | 4 cut(s) | 181, 1767, 2031, 5321 |
| Hin1I | GRCGYC | 2 cut(s) | 2381, 5319 |
| Hin6I | GCGC | 4 cut(s) | 179, 1765, 2029, 5319 |
| HinP1I | GCGC | 4 cut(s) | 179, 1765, 2029, 5319 |
| HincII | GTYRAC | 5 cut(s) | 1122, 2379, 2578, 2980, 3025 |
| HindII | GTYRAC | 5 cut(s) | 1122, 2379, 2578, 2980, 3025 |
| HindIII | AAGCTT | 2 cut(s) | 852, 3981 |
| HpaII | CCGG | 8 cut(s) | 360, 788, 1024, 2605, 3052, 3666, 3809, 4575 |
| Hpy99I | CGWCG | 8 cut(s) | 143, 717, 1018, 2538, 2705, 2981, 2984, 4272 |
| Hsp92I | GRCGYC | 2 cut(s) | 2381, 5319 |
| HspAI | GCGC | 4 cut(s) | 179, 1765, 2029, 5319 |
| KasI | GGCGCC | 1 cut(s) | 5318 |
| Kpn2I | TCCGGA | 3 cut(s) | 359, 3051, 3665 |
| KpnI | GGTACC | 1 cut(s) | 3136 |
| Ksp22I | TGATCA | 3 cut(s) | 3, 1696, 3987 |
| LguI | GCTCTTC | 1 cut(s) | 2829 |
| Lsp1109I | GCAGC | 7 cut(s) | 1444, 3776, 3859, 4226, 4535, 4601, 4798 |
| MaeI | CTAG | 6 cut(s) | 219, 1991, 3554, 3870, 4401, 5168 |
| MbiI | CCGCTC | 2 cut(s) | 1066, 3572 |
| MfeI | CAATTG | 3 cut(s) | 1103, 1650, 4052 |
| MflI | RGATCY | 8 cut(s) | 432, 1026, 2405, 2467, 2667, 2692, 4175, 5172 |
| Mly113I | GGCGCC | 1 cut(s) | 5319 |
| MlyI | GAGTC | 6 cut(s) | 23, 187, 284, 731, 1527, 5466 |
| MmeI | TCCRAC | 5 cut(s) | 1256, 1436, 2124, 4240, 5305 |
| Mph1103I | ATGCAT | 1 cut(s) | 4957 |
| MroI | TCCGGA | 3 cut(s) | 359, 3051, 3665 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1275, 1872, 2147, 2882, 3313, 3841 |
| MspA1I | CMGCKG | 4 cut(s) | 1049, 2342, 4597, 4927 |
| MspCI | CTTAAG | 1 cut(s) | 388 |
| MspI | CCGG | 8 cut(s) | 360, 788, 1024, 2605, 3052, 3666, 3809, 4575 |
| MunI | CAATTG | 3 cut(s) | 1103, 1650, 4052 |
| Mva1269I | GAATGC | 4 cut(s) | 663, 2908, 3089, 4955 |
| MvnI | CGCG | 1 cut(s) | 2013 |
| NarI | GGCGCC | 1 cut(s) | 5319 |
| NciI | CCSGG | 2 cut(s) | 788, 2606 |
| NcoI | CCATGG | 3 cut(s) | 1158, 4039, 4917 |
| NdeI | CATATG | 2 cut(s) | 1276, 5476 |
| NmeAIII | GCCGAG | 1 cut(s) | 5020 |
| NmuCI | GTSAC | 4 cut(s) | 559, 2106, 5449, 5498 |
| NsbI | TGCGCA | 1 cut(s) | 180 |
| NsiI | ATGCAT | 1 cut(s) | 4957 |
| NspV | TTCGAA | 2 cut(s) | 3959, 4740 |
| OliI | CACNNNNGTG | 1 cut(s) | 2147 |
| PaeI | GCATGC | 4 cut(s) | 1882, 2709, 4671, 4955 |
| PagI | TCATGA | 2 cut(s) | 13, 1662 |
| PasI | CCCWGGG | 1 cut(s) | 200 |
| PceI | AGGCCT | 1 cut(s) | 5386 |
| PciI | ACATGT | 2 cut(s) | 870, 1867 |
| PciSI | GCTCTTC | 1 cut(s) | 2829 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 5256 |
| PctI | GAATGC | 4 cut(s) | 663, 2908, 3089, 4955 |
| PfeI | GAWTC | 9 cut(s) | 205, 266, 688, 1054, 2198, 4046, 4304, 4637, 5011 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1442, 2074 |
| PfoI | TCCNGGA | 2 cut(s) | 2415, 2604 |
| PleI | GAGTC | 6 cut(s) | 23, 187, 283, 731, 1526, 5465 |
| PluTI | GGCGCC | 1 cut(s) | 5322 |
| PmaCI | CACGTG | 1 cut(s) | 1970 |
| PmlI | CACGTG | 1 cut(s) | 1970 |
| PpsI | GAGTC | 6 cut(s) | 23, 187, 283, 731, 1526, 5465 |
| Ppu21I | YACGTR | 3 cut(s) | 1970, 3718, 4426 |
| PpuMI | RGGWCCY | 3 cut(s) | 345, 2347, 4479 |
| PscI | ACATGT | 2 cut(s) | 870, 1867 |
| PsiI | TTATAA | 1 cut(s) | 2805 |
| Psp124BI | GAGCTC | 3 cut(s) | 2553, 2841, 4567 |
| Psp1406I | AACGTT | 2 cut(s) | 698, 3966 |
| Psp5II | RGGWCCY | 3 cut(s) | 345, 2347, 4479 |
| PspCI | CACGTG | 1 cut(s) | 1970 |
| PspEI | GGTNACC | 1 cut(s) | 559 |
| PspFI | CCCAGC | 2 cut(s) | 2265, 2514 |
| PspOMI | GGGCCC | 2 cut(s) | 571, 5437 |
| PspPPI | RGGWCCY | 3 cut(s) | 345, 2347, 4479 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1793 |
| PsuI | RGATCY | 8 cut(s) | 432, 1026, 2405, 2467, 2667, 2692, 4175, 5172 |
| PvuII | CAGCTG | 4 cut(s) | 1049, 2342, 4597, 4927 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1275, 1872, 2147, 2882, 3313, 3841 |
| SacI | GAGCTC | 3 cut(s) | 2553, 2841, 4567 |
| SalI | GTCGAC | 1 cut(s) | 2978 |
| SapI | GCTCTTC | 1 cut(s) | 2829 |
| ScaI | AGTACT | 2 cut(s) | 4379, 4494 |
| SchI | GAGTC | 6 cut(s) | 23, 187, 284, 731, 1527, 5466 |
| SfcI | CTRYAG | 3 cut(s) | 2401, 4977, 5092 |
| SfoI | GGCGCC | 1 cut(s) | 5320 |
| SfuI | TTCGAA | 2 cut(s) | 3959, 4740 |
| SgrDI | CGTCGACG | 1 cut(s) | 2978 |
| SinI | GGWCC | 5 cut(s) | 345, 2347, 4479, 4577, 4921 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1275, 1872, 2147, 2882, 3313, 3841 |
| SmlI | CTYRAG | 8 cut(s) | 388, 545, 1067, 1850, 3028, 3365, 3998, 5307 |
| SmoI | CTYRAG | 8 cut(s) | 388, 545, 1067, 1850, 3028, 3365, 3998, 5307 |
| SphI | GCATGC | 4 cut(s) | 1882, 2709, 4671, 4955 |
| SseBI | AGGCCT | 1 cut(s) | 5386 |
| SspDI | GGCGCC | 1 cut(s) | 5318 |
| SspI | AATATT | 1 cut(s) | 1592 |
| SspMI | CTAG | 6 cut(s) | 219, 1991, 3554, 3870, 4401, 5168 |
| SstI | GAGCTC | 3 cut(s) | 2553, 2841, 4567 |
| StuI | AGGCCT | 1 cut(s) | 5386 |
| StyI | CCWWGG | 8 cut(s) | 464, 1158, 1262, 2332, 3115, 3558, 4039, 4917 |
| TatI | WGTACW | 5 cut(s) | 3489, 4153, 4377, 4470, 4492 |
| TauI | GCSGC | 3 cut(s) | 3425, 3572, 3869 |
| TfiI | GAWTC | 9 cut(s) | 205, 266, 688, 1054, 2198, 4046, 4304, 4637, 5011 |
| TseFI | GTSAC | 4 cut(s) | 559, 2106, 5449, 5498 |
| TseI | GCWGC | 7 cut(s) | 1432, 3764, 3847, 4214, 4523, 4589, 4811 |
| Tsp45I | GTSAC | 4 cut(s) | 559, 2106, 5449, 5498 |
| TspGWI | ACGGA | 2 cut(s) | 2676, 4309 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1442, 2074 |
| Vha464I | CTTAAG | 1 cut(s) | 388 |
| VneI | GTGCAC | 1 cut(s) | 5122 |
| VpaK11BI | GGWCC | 5 cut(s) | 345, 2347, 4479, 4577, 4921 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 2920, 3393, 5075 |
| XapI | RAATTY | 7 cut(s) | 213, 488, 1397, 1736, 2249, 3196, 5339 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1184, 1342, 1613, 4256 |
| XmiI | GTMKAC | 3 cut(s) | 2868, 2979, 5142 |
| XspI | CTAG | 6 cut(s) | 219, 1991, 3554, 3870, 4401, 5168 |
| ZrmI | AGTACT | 2 cut(s) | 4379, 4494 |
| Zsp2I | ATGCAT | 1 cut(s) | 4957 |